Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8201038.1

Orthogroup ID

OG0001258

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 670

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8201038.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggaaggcggaggagaatgcaacggtggcggtgagaagcagccttctgttttcaatcggatattgctcaaataccggccgattgcgccgaaaccgttcaccggaggcacagctttggataagctgcccaagagaaccaagagaaagtacgttaggacggtccgcaaatataaagaagatgaaaacgggaaagaccaaatgacggatgagcagcgcgtggagacactgcagctgttgcctcagatcatagagcagagtggtagtgacctctccaagcactgtggcggatctagctgtgaggttgatgctatgatcgttgaagataacaatcactggttgagcttgaatggagccggagatccgaccgcggcggtggggaagaagcaggttgttgttgacagcgtgtcagatccatcggcggtgatggatcggatgggaggagtggagtcgtgggtgacggtggagtgcgtgagaggcacatgcatgatggctccgagttcttctcaagggtttgggtttggtctttccggggtcagtgcggacgaggagagaatgaggagattggagagagacgcatgtccggggttcatatcggacggttggaacagagtgcagtggctgaacggagcgtttaggaggatggtgatgatgacgaggcagcagcaaccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

24.59

Weight (kDa)

7.57

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27250 AT3G27250 AT5G40800
fragaria_vesca	FvH4_4g27450 FvH4_4g30960 FvH4_4g30960 FvH4_4g30960 FvH4_4g30960 FvH4_6g52950 FvH4_6g52960 FvH4_6g52960 FvH4_6g52960 FvH4_6g52960
malus_domestica	MD09G1015700.v1.1 MD09G1015800.v1.1 MD17G1016100.v1.1 MD17G1016200.v1.1
prunus_persica	Prupe.3G301500_v2.0.a1 Prupe.3G301600_v2.0.a1
pyrus_communis	pycom111g01280 pycom111g01290 pycom17g01300 pycom17g01310
rosa_chinensis	RchiOBHm_Chr2g0174661 RchiOBHm_Chr2g0174671 RchiOBHm_Chr4g0439311
rosa_laevigata	RLG00000006281 RLG00000022282 RLG00000022283
rosa_multiflora	Rmu_co8201038.1_g000001 Rmu_sc0007189.1_g000004 Rmu_sc0007189.1_g000005 Rmu_ssc0000171.1_g000012
rosa_roxburghii	Rroxscaffold_2G00077950 Rroxscaffold_2G00077960 Rroxscaffold_5G00380260
rosa_rugosa	Rorug02G0578600 Rorug02G0578600 Rorug04G0317300 Rorug04G0317400.1
rosa_samantha	Rh2AG659800 Rh2AG659900 Rh2BG041900 Rh2BG670700 Rh2BG670800 Rh2CG633800 Rh2CG633900 Rh2DG684200 Rh2DG684300 Rh4BG380100 Rh4CG394500 Rh4DG374500
rosa_wichuraiana	Rw0G002730 Rw2G054040 Rw2G054050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
AccII	CGCG	2 cut(s)	216, 368
AciI	CCGC	9 cut(s)	9, 30, 163, 285, 366, 368, 371, 419, 539
AclWI	GGATC	4 cut(s)	295, 353, 404, 435
AcoI	YGGCCR	1 cut(s)	77
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	101, 202
AgsI	TTSAA	3 cut(s)	55, 320, 346
AhdI	GACNNNNNGTC	1 cut(s)	403
AluBI	AGCT	5 cut(s)	113, 124, 232, 294, 342
AluI	AGCT	5 cut(s)	113, 124, 232, 294, 342
Alw26I	GTCTC	2 cut(s)	215, 564
AlwI	GGATC	4 cut(s)	295, 353, 404, 435
AlwNI	CAGNNNCTG	1 cut(s)	619
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	6 cut(s)	40, 124, 211, 229, 658, 661
Asp700I	GAANNNNTTC	1 cut(s)	95
AspLEI	GCGC	2 cut(s)	88, 216
AspS9I	GGNCC	1 cut(s)	160
AsuC2I	CCSGG	2 cut(s)	529, 582
AsuHPI	GGTGA	5 cut(s)	44, 91, 433, 466, 655
AvaII	GGWCC	1 cut(s)	160
BbvI	GCAGC	4 cut(s)	52, 111, 223, 241
BccI	CCATC	5 cut(s)	418, 421, 427, 481, 634
BcnI	CCSGG	2 cut(s)	529, 582
BcoDI	GTCTC	2 cut(s)	215, 564
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	376
BisI	GCNGC	7 cut(s)	41, 125, 212, 230, 369, 659, 662
BlsI	GCNGC	7 cut(s)	42, 126, 213, 231, 370, 660, 663
Bme1390I	CCNGG	2 cut(s)	529, 582
Bme18I	GGWCC	1 cut(s)	160
BmeRI	GACNNNNNGTC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	352, 492
BmrFI	CCNGG	2 cut(s)	529, 582
BmsI	GCATC	1 cut(s)	295
BoxI	GACNNNNGTC	1 cut(s)	576
BplI	GAGNNNNNCTC	2 cut(s)	487, 519
BpuEI	CTTGAG	1 cut(s)	489
BpuMI	CCSGG	2 cut(s)	529, 582
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	3 cut(s)	366, 528, 581
BsaWI	WCCGGW	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 202
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	338
Bse8I	GATNNNNATC	1 cut(s)	327
BseDI	CCNNGG	3 cut(s)	366, 528, 581
BseGI	GGATG	3 cut(s)	211, 438, 645
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	101, 202
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	4 cut(s)	27, 453, 560, 571
BseX3I	CGGCCG	1 cut(s)	77
BseXI	GCAGC	4 cut(s)	52, 111, 223, 241
BsgI	GTGCAG	1 cut(s)	632
Bsh1236I	CGCG	2 cut(s)	216, 368
Bsh1285I	CGRYCG	2 cut(s)	80, 366
BshFI	GGCC	1 cut(s)	79
BsiEI	CGRYCG	2 cut(s)	80, 366
BsiSI	CCGG	5 cut(s)	76, 102, 354, 528, 581
BslI	CCNNNNNNNGG	2 cut(s)	101, 202
BsmAI	GTCTC	2 cut(s)	215, 564
BsmBI	CGTCTC	1 cut(s)	564
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	79
Bsp143I	GATC	6 cut(s)	243, 287, 312, 358, 409, 427
BspACI	CCGC	9 cut(s)	9, 30, 163, 285, 366, 368, 371, 419, 539
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	2 cut(s)	216, 368
BspLI	GGNNCC	2 cut(s)	352, 492
BspMAI	CTGCAG	1 cut(s)	231
BspMI	ACCTGC	1 cut(s)	376
BspPI	GGATC	4 cut(s)	295, 353, 404, 435
BsrFI	RCCGGY	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	3 cut(s)	366, 528, 581
BssMI	GATC	6 cut(s)	243, 287, 312, 358, 409, 427
Bst4CI	ACNGT	6 cut(s)	26, 96, 160, 281, 460, 599
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	3 cut(s)	211, 438, 645
BstFNI	CGCG	2 cut(s)	216, 368
BstHHI	GCGC	2 cut(s)	88, 216
BstKTI	GATC	6 cut(s)	246, 290, 315, 361, 412, 430
BstMAI	GTCTC	2 cut(s)	215, 564
BstMBI	GATC	6 cut(s)	243, 287, 312, 358, 409, 427
BstMCI	CGRYCG	2 cut(s)	80, 366
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 85, 235, 291, 474
BstNSI	RCATGY	2 cut(s)	483, 579
BstPAI	GACNNNNGTC	1 cut(s)	576
BstSCI	CCNGG	2 cut(s)	527, 580
BstSFI	CTRYAG	1 cut(s)	227
BstUI	CGCG	2 cut(s)	216, 368
BstV1I	GCAGC	4 cut(s)	52, 111, 223, 241
BstX2I	RGATCY	3 cut(s)	287, 358, 409
BstYI	RGATCY	3 cut(s)	287, 358, 409
BstZI	CGGCCG	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	79
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	3 cut(s)	211, 438, 645
BtsI	GCAGTG	2 cut(s)	224, 620
BtsIMutI	CAGTG	5 cut(s)	224, 277, 331, 541, 620
BveI	ACCTGC	1 cut(s)	376
CaiI	CAGNNNCTG	1 cut(s)	619
CfoI	GCGC	2 cut(s)	88, 216
Cfr10I	RCCGGY	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	160
Cfr42I	CCGCGG	1 cut(s)	369
CpoI	CGGWCCG	1 cut(s)	160
CseI	GACGC	1 cut(s)	581
Csp6I	GTAC	1 cut(s)	148
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CspI	CGGWCCG	1 cut(s)	160
CviAII	CATG	3 cut(s)	480, 484, 576
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	6 cut(s)	245, 289, 314, 360, 411, 429
DpnII	GATC	6 cut(s)	243, 287, 312, 358, 409, 427
DriI	GACNNNNNGTC	1 cut(s)	403
EaeI	YGGCCR	1 cut(s)	77
EagI	CGGCCG	1 cut(s)	77
Eam1105I	GACNNNNNGTC	1 cut(s)	403
EciI	GGCGGA	2 cut(s)	24, 300
EclXI	CGGCCG	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	160
Eco52I	CGGCCG	1 cut(s)	77
EcoT22I	ATGCAT	1 cut(s)	485
Esp3I	CGTCTC	1 cut(s)	564
FaeI	CATG	3 cut(s)	483, 487, 579
FaiI	YATR	7 cut(s)	171, 248, 311, 481, 485, 577, 590
FatI	CATG	3 cut(s)	479, 483, 575
Fnu4HI	GCNGC	7 cut(s)	41, 125, 212, 230, 369, 659, 662
FokI	GGATG	3 cut(s)	218, 445, 652
Fsp4HI	GCNGC	7 cut(s)	41, 125, 212, 230, 369, 659, 662
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	2 cut(s)	87, 215
GluI	GCNGC	7 cut(s)	41, 125, 212, 230, 369, 659, 662
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	5 cut(s)	76, 102, 354, 528, 581
HgaI	GACGC	1 cut(s)	581
HhaI	GCGC	2 cut(s)	88, 216
Hin1II	CATG	3 cut(s)	483, 487, 579
Hin6I	GCGC	2 cut(s)	86, 214
HinP1I	GCGC	2 cut(s)	86, 214
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	1 cut(s)	446
HpaII	CCGG	5 cut(s)	76, 102, 354, 528, 581
HphI	GGTGA	5 cut(s)	44, 91, 433, 466, 655
Hpy166II	GTNNAC	2 cut(s)	99, 397
Hpy188I	TCNGA	7 cut(s)	60, 243, 363, 409, 432, 495, 595
Hpy8I	GTNNAC	2 cut(s)	99, 397
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	6 cut(s)	26, 96, 160, 281, 460, 599
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	4 cut(s)	21, 229, 483, 613
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 85, 235, 291, 474
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	483, 487, 579
HspAI	GCGC	2 cut(s)	86, 214
KspI	CCGCGG	1 cut(s)	369
Kzo9I	GATC	6 cut(s)	243, 287, 312, 358, 409, 427
LmnI	GCTCC	3 cut(s)	350, 496, 626
LpnPI	CCDG	7 cut(s)	89, 115, 319, 367, 371, 541, 594
Lsp1109I	GCAGC	4 cut(s)	52, 111, 223, 241
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	263, 454
MalI	GATC	6 cut(s)	245, 289, 314, 360, 411, 429
MboI	GATC	6 cut(s)	243, 287, 312, 358, 409, 427
MboII	GAAGA	4 cut(s)	188, 332, 391, 492
MflI	RGATCY	3 cut(s)	287, 358, 409
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	2 cut(s)	386, 581
Mph1103I	ATGCAT	1 cut(s)	485
MroXI	GAANNNNTTC	1 cut(s)	95
MslI	CAYNNNNRTG	1 cut(s)	482
MspA1I	CMGCKG	2 cut(s)	232, 368
MspI	CCGG	5 cut(s)	76, 102, 354, 528, 581
MspR9I	CCNGG	2 cut(s)	529, 582
Mva1269I	GAATGC	1 cut(s)	23
MvnI	CGCG	2 cut(s)	216, 368
MwoI	GCNNNNNNNGC	5 cut(s)	27, 85, 235, 291, 474
NciI	CCSGG	2 cut(s)	529, 582
NdeII	GATC	6 cut(s)	243, 287, 312, 358, 409, 427
NlaIII	CATG	3 cut(s)	483, 487, 579
NlaIV	GGNNCC	2 cut(s)	352, 492
NmuCI	GTSAC	2 cut(s)	263, 454
NsiI	ATGCAT	1 cut(s)	485
NspI	RCATGY	2 cut(s)	483, 579
PctI	GAATGC	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	95
PkrI	GCNGC	7 cut(s)	42, 126, 213, 231, 370, 660, 663
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PshAI	GACNNNNGTC	1 cut(s)	576
PspN4I	GGNNCC	2 cut(s)	352, 492
PspPI	GGNCC	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	231
PstNI	CAGNNNCTG	1 cut(s)	619
PsuI	RGATCY	3 cut(s)	287, 358, 409
PvuII	CAGCTG	1 cut(s)	232
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	482
Rsr2I	CGGWCCG	1 cut(s)	160
RsrII	CGGWCCG	1 cut(s)	160
SacII	CCGCGG	1 cut(s)	369
SatI	GCNGC	7 cut(s)	41, 125, 212, 230, 369, 659, 662
Sau3AI	GATC	6 cut(s)	243, 287, 312, 358, 409, 427
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	2 cut(s)	529, 582
SetI	ASST	9 cut(s)	115, 126, 153, 234, 270, 296, 303, 344, 390
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	1 cut(s)	227
Sfr303I	CCGCGG	1 cut(s)	369
SgrBI	CCGCGG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
SsiI	CCGC	9 cut(s)	9, 30, 163, 285, 366, 368, 371, 419, 539
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	527, 580
TaaI	ACNGT	6 cut(s)	26, 96, 160, 281, 460, 599
TaiI	ACGT	1 cut(s)	153
TauI	GCSGC	1 cut(s)	371
TscAI	CASTG	5 cut(s)	231, 284, 338, 541, 620
TseFI	GTSAC	2 cut(s)	263, 454
TseI	GCWGC	6 cut(s)	40, 124, 211, 229, 658, 661
Tsp45I	GTSAC	2 cut(s)	263, 454
TspDTI	ATGAA	2 cut(s)	195, 577
TspGWI	ACGGA	2 cut(s)	218, 639
TspRI	CASTG	5 cut(s)	231, 284, 338, 541, 620
VpaK11BI	GGWCC	1 cut(s)	160
XceI	RCATGY	2 cut(s)	483, 579
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.