AT5G44740

dna polymerase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
18047733 .. 18051896
4164 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44740.3

Sequence Viewer

Length: 1767 bp
ATGAGGCTAAAGCTGCTTGTCCTCAGATTCAATTGGTTCAAGTTCCTGTGGCTCGTGGTGGTTTCGATTCTAGCAAAAAGCGGAAAATGTGAGAGGGCTTCGATTGATGAAGTGTATCTTGACCTCACTGATGCAGCAGAAAGCATGCTTGCTGATGCACCTCCAGAGAGTTTGGAATTGATAGATGAGGAAGTTCTTAAATCCCATATTCTTGGAATGAACAGAGAGGATGGAGATGATTTCAAGGAGAGTGTCCGCAATTGGATTTGTCGAGAAGATGCTGATCGACGTGATAAGTTATTAAGTTGTGGAATTATCATTGTTGCAGAACTCCGGAAACAGGTGCTTAAGGAGACTGAGTTTACTTGTTCTGCTGGCATAGCCCATAACAAGATGCTAGCCAAACTTGCTAGTGGAATGAACAAACCTGCGCAGCAGACAGTTGTACCATATGCAGCTGTACAGGAATTACTAAGTTCCTTGCCAATAAAGAAAATGAAACAACTGGGAGGAAAGCTGGGCACTAGCTTGCAAACTGACTTGGGAGTTGACACAGTAGGGGACTTGCTGCAATTTTCTGAAACGAAGCTACAAGAACATTACGGAGTAAATACTGGTACTTGGTTATGGAATATAGCAAGAGGGATCAGTGGAGAAGAAGTGCAAGGTCGCCTTCTCCCCAAAAGTCATGGTTCTGGAAAGACATTTCCCGGACCTCGTGCTTTGAAGTCACTCTCAACTGTTCAGCATTGGCTGAATCAGCTTTCCGAGGAACTAAGCGAGCGCCTCGGTTCTGACTTGGAGCAGAATAAGCGGATTGCAAGCACCCTTACCCTTCATGCTAGCGCTTTCAGATCAAAGGATTCAGATTCTCATAAGAAATTTCCTTCAAAATCATGTCCTATGAGATATGGAGTAACCAAGATCCAAGAAGATGCCTTTAACTTGTTCCAAGCTGCCTTACGTGAGTACATGGGATCCTTCGGGATCAAACCTCAAGGAAATAAGCTAGAGACATGGAGGATAACAGGTCTTTCTGTTTCAGCGAGTAAAATTGTTGATATACCATCTGGAACAAGCTCGATCATGAGATATTTTCAAAGTCAACCTACTGTTCCTTCTCGTTCAGCAGATGGTTGTGTTCAAGGAAATGTAGCGATGACTGCTTCAGCTAGCGAAGGATGTTCAGAACAGAGGTCAACAGAAACTCAAGCAGCAATGCCTGAAGTAGACACCGGTGTAACTTATACTTTGCCTAATTTTGAAAACCAAGATAAAGACATTGATCTAGTCTCCGAAAAGGATGTTGTCTCTTGTCCATCAAACGAAGCAACGGATGTTTCTACCCAATCAGAATCAAACAAAGGCACACAGACAAAGAAAATTGGGCGGAAGATGAACAACTCGAAAGAAAAGAATCGGGGAATGCCTTCAATTGTCGATATCTTTAAGAATTACAATGCAACACCTCCATCAAAACAAGAGACTCAAGAAGATTCCACAGTGTCATCAGCCAGTAAAAGAGCAAAGTTAAGTAGCAGCAGCCATAATAGTCAAGTGAATCAAGAGGTAGAAGAGAGTAGAGAAACAGATTGGGGATATAAGACTGATGAAATCGATCAGTCAGTTTTCGATGAATTACCGGTTGAGATTCAACGAGAACTCAGGAGTTTCCTACGCACCAATAAGCAGTTTAACACCGGTAAAAGCAAAGGTGATGGTTCTACTTCAAGCATTGCTCATTATTTTCCACCATTGAATAGATAG

Protein Analysis

588

Amino Acids

65.19

Weight (kDa)

6.38

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IMS PF00817 1 - 155 2.1e-21 impB/mucB/samB family
POLH-Rev1_HhH PF21704 178 - 233 1.8e-24 DNApol eta/Rev1, HhH motif
IMS_C PF11799 244 - 373 3.5e-09 impB/mucB/samB family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 432
Acc36I ACCTGC 1 cut(s) 436
AccI GTMKAC 1 cut(s) 1230
AccIII TCCGGA 1 cut(s) 333
AciI CCGC 4 cut(s) 81, 256, 814, 1390
AclWI GGATC 5 cut(s) 653, 919, 972, 985, 995
AcsI RAATTY 1 cut(s) 881
AcuI CTGAAG 2 cut(s) 1152, 1245
AfaI GTAC 4 cut(s) 447, 462, 619, 971
AfeI AGCGCT 1 cut(s) 847
AfiI CCNNNNNNNGG 1 cut(s) 340
AflII CTTAAG 1 cut(s) 347
AgeI ACCGGT 3 cut(s) 1235, 1642, 1700
AjiI CACGTC 1 cut(s) 290
Alw26I GTCTC 5 cut(s) 347, 1007, 1297, 1315, 1478
AlwI GGATC 5 cut(s) 653, 919, 972, 985, 995
Aor13HI TCCGGA 1 cut(s) 333
Aor51HI AGCGCT 1 cut(s) 847
ApeKI GCWGC 9 cut(s) 13, 134, 433, 455, 568, 956, 1214, 1539, 1542
ApoI RAATTY 1 cut(s) 881
AsiGI ACCGGT 3 cut(s) 1235, 1642, 1700
Asp700I GAANNNNTTC 1 cut(s) 1429
AspLEI GCGC 3 cut(s) 433, 786, 848
AspS9I GGNCC 1 cut(s) 713
AsuC2I CCSGG 1 cut(s) 711
AsuHPI GGTGA 1 cut(s) 1727
AsuNHI GCTAGC 3 cut(s) 397, 842, 1172
AvaII GGWCC 1 cut(s) 713
BaeGI GKGCMC 1 cut(s) 524
BaeI ACNNNNGTAYC 2 cut(s) 429, 462
BamHI GGATCC 1 cut(s) 977
BauI CACGAG 2 cut(s) 53, 717
BbvI GCAGC 8 cut(s) 146, 445, 467, 555, 943, 1226, 1551, 1554
BccI CCATC 6 cut(s) 224, 1075, 1127, 1327, 1480, 1712
BcnI CCSGG 1 cut(s) 711
BcoDI GTCTC 5 cut(s) 347, 1007, 1297, 1315, 1478
BfaI CTAG 8 cut(s) 71, 398, 411, 525, 843, 1010, 1173, 1289
BfoI RGCGCY 2 cut(s) 787, 849
BfrI CTTAAG 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 436
BisI GCNGC 9 cut(s) 14, 135, 434, 456, 569, 957, 1215, 1540, 1543
BlsI GCNGC 9 cut(s) 15, 136, 435, 457, 570, 958, 1216, 1541, 1544
Bme1390I CCNGG 1 cut(s) 711
Bme18I GGWCC 1 cut(s) 713
BmgBI CACGTC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 713
BmiI GGNNCC 1 cut(s) 979
BmrFI CCNGG 1 cut(s) 711
BmrI ACTGGG 1 cut(s) 515
BmsI GCATC 5 cut(s) 121, 145, 268, 384, 925
BmtI GCTAGC 3 cut(s) 401, 846, 1176
BmuI ACTGGG 1 cut(s) 515
BpmI CTGGAG 1 cut(s) 147
BpuEI CTTGAG 3 cut(s) 981, 1194, 1473
BpuMI CCSGG 1 cut(s) 711
Bsa29I ATCGAT 1 cut(s) 1617
BsaAI YACGTR 1 cut(s) 965
BsaBI GATNNNNATC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 768, 787
BsaWI WCCGGW 4 cut(s) 333, 1235, 1642, 1700
BsaXI ACNNNNNCTCC 4 cut(s) 344, 374, 645, 675
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse118I RCCGGY 3 cut(s) 1235, 1642, 1700
Bse1I ACTGG 3 cut(s) 510, 619, 1515
Bse3DI GCAATG 2 cut(s) 1224, 1734
Bse8I GATNNNNATC 1 cut(s) 282
BseAI TCCGGA 1 cut(s) 333
BseCI ATCGAT 1 cut(s) 1617
BseDI CCNNGG 2 cut(s) 768, 787
BseGI GGATG 4 cut(s) 235, 1187, 1309, 1342
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMI GCAATG 2 cut(s) 1224, 1734
BseMII CTCAG 3 cut(s) 37, 348, 1678
BseNI ACTGG 3 cut(s) 510, 619, 1515
BseSI GKGCMC 1 cut(s) 524
BseXI GCAGC 8 cut(s) 146, 445, 467, 555, 943, 1226, 1551, 1554
BseYI CCCAGC 1 cut(s) 517
BshTI ACCGGT 3 cut(s) 1235, 1642, 1700
BshVI ATCGAT 1 cut(s) 1617
BsiSI CCGG 5 cut(s) 334, 711, 1236, 1643, 1701
BslFI GGGAC 1 cut(s) 575
BslI CCNNNNNNNGG 1 cut(s) 340
BsmAI GTCTC 5 cut(s) 347, 1007, 1297, 1315, 1478
BsmFI GGGAC 1 cut(s) 575
BsmI GAATGC 1 cut(s) 1431
Bsp1286I GDGCHC 1 cut(s) 524
Bsp13I TCCGGA 1 cut(s) 333
Bsp1407I TGTACA 1 cut(s) 460
Bsp143I GATC 9 cut(s) 283, 645, 854, 924, 977, 987, 1083, 1285, 1618
BspACI CCGC 4 cut(s) 81, 256, 814, 1390
BspCNI CTCAG 3 cut(s) 36, 349, 1677
BspDI ATCGAT 1 cut(s) 1617
BspEI TCCGGA 1 cut(s) 333
BspHI TCATGA 1 cut(s) 1086
BspLI GGNNCC 1 cut(s) 979
BspMI ACCTGC 1 cut(s) 436
BspOI GCTAGC 3 cut(s) 401, 846, 1176
BspPI GGATC 5 cut(s) 653, 919, 972, 985, 995
BspTI CTTAAG 1 cut(s) 347
BsrDI GCAATG 2 cut(s) 1224, 1734
BsrFI RCCGGY 3 cut(s) 1235, 1642, 1700
BsrGI TGTACA 1 cut(s) 460
BsrI ACTGG 3 cut(s) 510, 619, 1515
BssAI RCCGGY 3 cut(s) 1235, 1642, 1700
BssECI CCNNGG 2 cut(s) 768, 787
BssMI GATC 9 cut(s) 283, 645, 854, 924, 977, 987, 1083, 1285, 1618
BssSI CACGAG 2 cut(s) 53, 717
Bst2BI CACGAG 2 cut(s) 53, 717
Bst4CI ACNGT 5 cut(s) 442, 556, 742, 1114, 1504
Bst6I CTCTTC 1 cut(s) 1569
BstAFI CTTAAG 1 cut(s) 347
BstAUI TGTACA 1 cut(s) 460
BstBAI YACGTR 1 cut(s) 965
BstC8I GCNNGC 9 cut(s) 146, 150, 376, 399, 530, 782, 823, 844, 1174
BstDEI CTNAG 5 cut(s) 23, 357, 473, 776, 1664
BstF5I GGATG 4 cut(s) 235, 1187, 1309, 1342
BstH2I RGCGCY 2 cut(s) 787, 849
BstHHI GCGC 3 cut(s) 433, 786, 848
BstKTI GATC 9 cut(s) 286, 648, 857, 927, 980, 990, 1086, 1288, 1621
BstMAI GTCTC 5 cut(s) 347, 1007, 1297, 1315, 1478
BstMBI GATC 9 cut(s) 283, 645, 854, 924, 977, 987, 1083, 1285, 1618
BstMWI GCNNNNNNNGC 6 cut(s) 13, 380, 407, 760, 811, 1163
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 709
BstSLI GKGCMC 1 cut(s) 524
BstV1I GCAGC 8 cut(s) 146, 445, 467, 555, 943, 1226, 1551, 1554
BstX2I RGATCY 2 cut(s) 924, 977
BstXI CCANNNNNNTGG 1 cut(s) 212
BstYI RGATCY 2 cut(s) 924, 977
Bsu15I ATCGAT 1 cut(s) 1617
BsuTUI ATCGAT 1 cut(s) 1617
BtgZI GCGATG 1 cut(s) 1172
BtrI CACGTC 1 cut(s) 290
BtsCI GGATG 4 cut(s) 235, 1187, 1309, 1342
BtsIMutI CAGTG 3 cut(s) 126, 655, 1509
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 9 cut(s) 146, 150, 376, 399, 530, 782, 823, 844, 1174
CciI TCATGA 1 cut(s) 1086
CfoI GCGC 3 cut(s) 433, 786, 848
Cfr10I RCCGGY 3 cut(s) 1235, 1642, 1700
Cfr13I GGNCC 1 cut(s) 713
ClaI ATCGAT 1 cut(s) 1617
Csp6I GTAC 4 cut(s) 446, 461, 618, 970
CspAI ACCGGT 3 cut(s) 1235, 1642, 1700
CviAII CATG 7 cut(s) 145, 689, 839, 897, 973, 1017, 1087
CviQI GTAC 4 cut(s) 446, 461, 618, 970
DdeI CTNAG 5 cut(s) 23, 357, 473, 776, 1664
DpnI GATC 9 cut(s) 285, 647, 856, 926, 979, 989, 1085, 1287, 1620
DpnII GATC 9 cut(s) 283, 645, 854, 924, 977, 987, 1083, 1285, 1618
Eam1104I CTCTTC 1 cut(s) 1569
EarI CTCTTC 1 cut(s) 1569
EciI GGCGGA 1 cut(s) 1405
Eco32I GATATC 1 cut(s) 1444
Eco47I GGWCC 1 cut(s) 713
Eco47III AGCGCT 1 cut(s) 847
Eco57I CTGAAG 2 cut(s) 1152, 1245
EcoRV GATATC 1 cut(s) 1444
FaeI CATG 7 cut(s) 148, 692, 842, 900, 976, 1020, 1090
FalI AAGNNNNNCTT 4 cut(s) 102, 134, 657, 689
FaqI GGGAC 1 cut(s) 575
FatI CATG 7 cut(s) 144, 688, 838, 896, 972, 1016, 1086
FauNDI CATATG 1 cut(s) 451
FblI GTMKAC 1 cut(s) 1230
Fnu4HI GCNGC 9 cut(s) 14, 135, 434, 456, 569, 957, 1215, 1540, 1543
FokI GGATG 4 cut(s) 242, 1194, 1316, 1349
Fsp4HI GCNGC 9 cut(s) 14, 135, 434, 456, 569, 957, 1215, 1540, 1543
FspBI CTAG 8 cut(s) 71, 398, 411, 525, 843, 1010, 1173, 1289
FspI TGCGCA 1 cut(s) 432
GlaI GCGC 3 cut(s) 432, 785, 847
GluI GCNGC 9 cut(s) 14, 135, 434, 456, 569, 957, 1215, 1540, 1543
GsaI CCCAGC 1 cut(s) 521
GsuI CTGGAG 1 cut(s) 147
HaeII RGCGCY 2 cut(s) 787, 849
HapII CCGG 5 cut(s) 334, 711, 1236, 1643, 1701
HhaI GCGC 3 cut(s) 433, 786, 848
Hin1II CATG 7 cut(s) 148, 692, 842, 900, 976, 1020, 1090
Hin6I GCGC 3 cut(s) 431, 784, 846
HinP1I GCGC 3 cut(s) 431, 784, 846
HincII GTYRAC 3 cut(s) 550, 1106, 1200
HindII GTYRAC 3 cut(s) 550, 1106, 1200
HpaII CCGG 5 cut(s) 334, 711, 1236, 1643, 1701
HphI GGTGA 1 cut(s) 1727
Hpy166II GTNNAC 5 cut(s) 363, 550, 1106, 1200, 1231
Hpy188I TCNGA 9 cut(s) 26, 580, 769, 796, 854, 868, 1189, 1297, 1354
Hpy8I GTNNAC 5 cut(s) 363, 550, 1106, 1200, 1231
Hpy99I CGWCG 1 cut(s) 291
HpyAV CCTTC 7 cut(s) 683, 845, 897, 991, 1128, 1172, 1440
HpyCH4III ACNGT 5 cut(s) 442, 556, 742, 1114, 1504
HpyCH4IV ACGT 2 cut(s) 289, 964
HpyCH4V TGCA 9 cut(s) 134, 158, 326, 455, 532, 571, 664, 821, 1463
HpyF10VI GCNNNNNNNGC 6 cut(s) 13, 380, 407, 760, 811, 1163
HpyF3I CTNAG 5 cut(s) 23, 357, 473, 776, 1664
HpySE526I ACGT 2 cut(s) 289, 964
Hsp92II CATG 7 cut(s) 148, 692, 842, 900, 976, 1020, 1090
HspAI GCGC 3 cut(s) 431, 784, 846
Kpn2I TCCGGA 1 cut(s) 333
Kzo9I GATC 9 cut(s) 283, 645, 854, 924, 977, 987, 1083, 1285, 1618
LmnI GCTCC 1 cut(s) 802
Lsp1109I GCAGC 8 cut(s) 146, 445, 467, 555, 943, 1226, 1551, 1554
LweI GCATC 5 cut(s) 121, 145, 268, 384, 925
MaeI CTAG 8 cut(s) 71, 398, 411, 525, 843, 1010, 1173, 1289
MaeII ACGT 2 cut(s) 289, 964
MaeIII GTNAC 3 cut(s) 729, 916, 1240
MalI GATC 9 cut(s) 285, 647, 856, 926, 979, 989, 1085, 1287, 1620
MboI GATC 9 cut(s) 283, 645, 854, 924, 977, 987, 1083, 1285, 1618
MboII GAAGA 6 cut(s) 287, 668, 944, 1405, 1505, 1586
MfeI CAATTG 3 cut(s) 31, 259, 1434
MflI RGATCY 2 cut(s) 924, 977
MhlI GDGCHC 1 cut(s) 524
MlyI GAGTC 1 cut(s) 1480
MroI TCCGGA 1 cut(s) 333
MroXI GAANNNNTTC 1 cut(s) 1429
MseI TTAA 7 cut(s) 198, 302, 348, 942, 1449, 1532, 1695
MspA1I CMGCKG 1 cut(s) 458
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 5 cut(s) 334, 711, 1236, 1643, 1701
MspR9I CCNGG 1 cut(s) 711
MunI CAATTG 3 cut(s) 31, 259, 1434
Mva1269I GAATGC 1 cut(s) 1431
MwoI GCNNNNNNNGC 6 cut(s) 13, 380, 407, 760, 811, 1163
NciI CCSGG 1 cut(s) 711
NdeI CATATG 1 cut(s) 451
NdeII GATC 9 cut(s) 283, 645, 854, 924, 977, 987, 1083, 1285, 1618
NheI GCTAGC 3 cut(s) 397, 842, 1172
NlaIII CATG 7 cut(s) 148, 692, 842, 900, 976, 1020, 1090
NlaIV GGNNCC 1 cut(s) 979
NmuCI GTSAC 1 cut(s) 729
NsbI TGCGCA 1 cut(s) 432
NspI RCATGY 1 cut(s) 148
PaeI GCATGC 1 cut(s) 148
PagI TCATGA 1 cut(s) 1086
PctI GAATGC 1 cut(s) 1431
PdmI GAANNNNTTC 1 cut(s) 1429
PfoI TCCNGGA 1 cut(s) 709
PinAI ACCGGT 3 cut(s) 1235, 1642, 1700
PkrI GCNGC 9 cut(s) 15, 136, 435, 457, 570, 958, 1216, 1541, 1544
PleI GAGTC 1 cut(s) 1480
PpsI GAGTC 1 cut(s) 1480
Ppu21I YACGTR 1 cut(s) 965
PspFI CCCAGC 1 cut(s) 517
PspN4I GGNNCC 1 cut(s) 979
PspPI GGNCC 1 cut(s) 713
PsuI RGATCY 2 cut(s) 924, 977
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 4 cut(s) 447, 462, 619, 971
RsaNI GTAC 4 cut(s) 446, 461, 618, 970
SaqAI TTAA 7 cut(s) 198, 302, 348, 942, 1449, 1532, 1695
SatI GCNGC 9 cut(s) 14, 135, 434, 456, 569, 957, 1215, 1540, 1543
Sau3AI GATC 9 cut(s) 283, 645, 854, 924, 977, 987, 1083, 1285, 1618
Sau96I GGNCC 1 cut(s) 713
SchI GAGTC 1 cut(s) 1480
ScrFI CCNGG 1 cut(s) 711
SduI GDGCHC 1 cut(s) 524
SfaNI GCATC 5 cut(s) 121, 145, 268, 384, 925
SgrAI CRCCGGYG 1 cut(s) 1235
SinI GGWCC 1 cut(s) 713
SmlI CTYRAG 4 cut(s) 347, 996, 1209, 1488
SmoI CTYRAG 4 cut(s) 347, 996, 1209, 1488
SphI GCATGC 1 cut(s) 148
SsiI CCGC 4 cut(s) 81, 256, 814, 1390
SspMI CTAG 8 cut(s) 71, 398, 411, 525, 843, 1010, 1173, 1289
StyD4I CCNGG 1 cut(s) 709
TaaI ACNGT 5 cut(s) 442, 556, 742, 1114, 1504
TaiI ACGT 2 cut(s) 292, 967
TaqI TCGA 9 cut(s) 65, 101, 271, 286, 1082, 1406, 1440, 1617, 1632
TatI WGTACW 2 cut(s) 460, 969
Tru1I TTAA 7 cut(s) 198, 302, 348, 942, 1449, 1532, 1695
Tru9I TTAA 7 cut(s) 198, 302, 348, 942, 1449, 1532, 1695
TscAI CASTG 3 cut(s) 133, 655, 1509
TseFI GTSAC 1 cut(s) 729
TseI GCWGC 9 cut(s) 13, 134, 433, 455, 568, 956, 1214, 1539, 1542
Tsp45I GTSAC 1 cut(s) 729
TspDTI ATGAA 8 cut(s) 123, 233, 434, 512, 827, 1412, 1626, 1650
TspGWI ACGGA 2 cut(s) 618, 1349
TspRI CASTG 3 cut(s) 133, 655, 1509
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 713
XapI RAATTY 1 cut(s) 881
XceI RCATGY 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 1230
XmnI GAANNNNTTC 1 cut(s) 1429
XspI CTAG 8 cut(s) 71, 398, 411, 525, 843, 1010, 1173, 1289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.