Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Reverse (-)

79287400 .. 79288589

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00057330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCCAGTGGCAAGACCTGAAACATCGGATTCGAGAGTCGTTGCTCATGTAGACATGGACTGCTTCTACGTTCAAGTGGAGCAAAGGAAAAATCCGGAGTTAAAGGGCTTACCTACGGCTGTGGTACAGTATAACTCATGGCAAGGTGGGGGTTTGATTGCTGTCAGCTATGAGGTCCGGAGATGCACTGTGAAACATTCTATGCAAGGTGCTGAGTCAAAGCAAGTCTGCCCACAAATTCAGCTGGTCCAAGTCCCAGTAGCACGGGGTAAAGCTGACCTGAACTCATACTGGAGTGCAGGTTCAGAGGTCTCTAGTGTTCGAGAGACATCAATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

113

Amino Acids

12.44

Weight (kDa)

7.72

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMS	PF00817	17 - 106	1.8e-18	impB/mucB/samB family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	290
AccI	GTMKAC	1 cut(s)	51
AccIII	TCCGGA	2 cut(s)	94, 177
AcsI	RAATTY	1 cut(s)	237
AfaI	GTAC	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	74
AloI	GAACNNNNNNTCC	2 cut(s)	286, 318
AluBI	AGCT	3 cut(s)	168, 244, 275
AluI	AGCT	3 cut(s)	168, 244, 275
Alw26I	GTCTC	2 cut(s)	316, 320
Aor13HI	TCCGGA	2 cut(s)	94, 177
ApoI	RAATTY	1 cut(s)	237
AspS9I	GGNCC	2 cut(s)	175, 247
AvaII	GGWCC	2 cut(s)	175, 247
BceAI	ACGGC	1 cut(s)	132
BcoDI	GTCTC	2 cut(s)	316, 320
BfaI	CTAG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	290
Bme18I	GGWCC	2 cut(s)	175, 247
BmgT120I	GGNCC	2 cut(s)	175, 247
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	173
BmuI	ACTGGG	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	313
BsaI	GGTCTC	1 cut(s)	316
BsaWI	WCCGGW	2 cut(s)	94, 177
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bse1I	ACTGG	3 cut(s)	5, 257, 296
BseAI	TCCGGA	2 cut(s)	94, 177
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	3 cut(s)	5, 257, 296
BsgI	GTGCAG	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	95, 178
BslFI	GGGAC	1 cut(s)	239
BsmAI	GTCTC	2 cut(s)	316, 320
BsmFI	GGGAC	1 cut(s)	239
Bso31I	GGTCTC	1 cut(s)	316
Bsp13I	TCCGGA	2 cut(s)	94, 177
BspCNI	CTCAG	1 cut(s)	205
BspEI	TCCGGA	2 cut(s)	94, 177
BspMI	ACCTGC	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	316
BsrI	ACTGG	3 cut(s)	5, 257, 296
Bst4CI	ACNGT	2 cut(s)	129, 190
BstDEI	CTNAG	1 cut(s)	213
BstMAI	GTCTC	2 cut(s)	316, 320
BtsIMutI	CAGTG	2 cut(s)	12, 186
BveI	ACCTGC	1 cut(s)	290
Cfr13I	GGNCC	2 cut(s)	175, 247
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	3 cut(s)	47, 55, 138
CviJI	RGCY	5 cut(s)	108, 119, 168, 244, 275
CviKI_1	RGCY	5 cut(s)	108, 119, 168, 244, 275
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	175, 247
FaeI	CATG	3 cut(s)	50, 58, 141
FaiI	YATR	7 cut(s)	48, 56, 132, 139, 171, 203, 289
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	3 cut(s)	46, 54, 137
FblI	GTMKAC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	315
GsuI	CTGGAG	1 cut(s)	313
HapII	CCGG	2 cut(s)	95, 178
Hin1II	CATG	3 cut(s)	50, 58, 141
HinfI	GANTC	3 cut(s)	29, 36, 215
HpaII	CCGG	2 cut(s)	95, 178
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	2 cut(s)	28, 307
Hpy188III	TCNNGA	5 cut(s)	33, 95, 178, 323, 339
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4III	ACNGT	2 cut(s)	129, 190
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	3 cut(s)	186, 205, 299
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	50, 58, 141
Kpn2I	TCCGGA	2 cut(s)	94, 177
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	9 cut(s)	18, 30, 108, 191, 230, 270, 277, 285, 293
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	69
MluCI	AATT	2 cut(s)	237, 333
MlyI	GAGTC	2 cut(s)	45, 224
MnlI	CCTC	2 cut(s)	166, 301
MroI	TCCGGA	2 cut(s)	94, 177
MseI	TTAA	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	2 cut(s)	95, 178
NlaIII	CATG	3 cut(s)	50, 58, 141
PfeI	GAWTC	1 cut(s)	29
PleI	GAGTC	2 cut(s)	44, 223
PpsI	GAGTC	2 cut(s)	44, 223
PspPI	GGNCC	2 cut(s)	175, 247
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	101
Sau96I	GGNCC	2 cut(s)	175, 247
SchI	GAGTC	2 cut(s)	45, 224
SfaNI	GCATC	1 cut(s)	173
SinI	GGWCC	2 cut(s)	175, 247
Sse9I	AATT	2 cut(s)	237, 333
SspMI	CTAG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	129, 190
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	2 cut(s)	32, 322
TasI	AATT	2 cut(s)	237, 333
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	2 cut(s)	12, 193
TspRI	CASTG	2 cut(s)	12, 193
VpaK11BI	GGWCC	2 cut(s)	175, 247
XapI	RAATTY	1 cut(s)	237
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.