Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Forward (+)

15750245 .. 15824864

Gene Structure 74620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG153700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1896 bp

ATGGAACCAGCGTTGGAGCAAGGGAAAAATCCGGAGTTAAGGGGCTTACCTACGGCTGTGGTACAGTATAACTCATGGCAAGGTGGGGGTTTGATTGCTGTCAGCTATGAGGCCCGGAGATGCGGTGTGAAACATTCTATGCAAGGTGCTGAGTCAAAGCAAGTCTGCCCACAAATTCAGCTGGTCCAAGTCCCAGTAGCACGGGGTAAAGCTGACCTGAACTCATACTGGAGTGCAGGTTCAGAGGTGGTTTCCATTCTATCAAGGAAGGGTCGATGTGAGAGGGCTTCAATTGACGAAGTGTATCTTGACCTTACCGATGCAGCAGAAACCATGTTAGCTGAAGCTCCTCCAGAAAGCTTGGAAGCAATTGAGGAGGAAGCTCTCAAGTCACATGTTTTGGGACTCGATAATGAGGACGGCAGTGAAGCCAAAGAAAATGTGAGTAAATGGCTTTGCAAAACCAATGCTGATCGTCGTGATAAGCTATTAGCTTGTGGGGCACTCATTGTTGCAGAACTTAGGTTGCTAGTGTTGAAGGAGACAGAATTTACTTGTTCAGCTGGCATTGCTCATAATAAGATGCTGGCTAAACTTGCAAGTGGTATGAACAAACCTGCACAACAGACTGTTGTGCCGTTATCATCTGTGAAAGGACTGCTAGAGTCCTTGCCAATTAAGAAAATGAAACAGCTTGGAGGAAAGCTGGGGAGTTCCTTACAAACTGACCTGGGTGTTAACACTGTCGGAGATTTATTGCAGTTTTCAGAGGAAAAGCTACAGCAACGCTACGGAATCAATACTGGTAGCTGGTTATGGAATACTGCAAGGGGGATAAGTGGGGAAGAAGTTGAGGGGCGCCTTCTTCCGAAGAGCCATGGTTCTGGGAAGACATTTCCTGGACCTCTGGCTTTAAAGACGATTTCTTCTGTTCAACACTGGCTTAATGAACTTAGTGAAGATTTGAGTGAACGTCTTCAATTGGACTTGGATGAAAACAAACGTATCGCTCATACACTAGTGCTGCATGCCAACGCATACAAGGCCAGTGATTCAGATTCACAGAAGAAGTTCCCTTCTAAATCTTGCCCCCTTAGGTATGGGGCTGCCAAGATACAAGAAGATGCTCTTAATCTCTTTCAAGCTGCATTACGTGAATACTTGGGTTTATTCACAGCCAAAATCCAAGGAAGTCAAAATAACCAATGGGGAATAACATCCCTCTCTGTTTCAGCAAGTAAAATTGTTCCTATACCATCGGGAACAGCTTCAATTATGAAATACTTTCATGGTCATCAGCCATCCTCTTCGACAAAGCAATCACAGGATAATTTCATTGAAGAATCTGCGCCTCCACCACCTTCAGGTAATGAGAACTATTCAGAGCTGAATGTAGATAAGCCACAGATCGAGTTACCTTGTGAAGAAACTACGATCAAGTATGCTGTGCCTAGTTTGCATCAACTGGAAGACAAAAACAATTTGTTGAATGACCAGGGAACCTCTTCAATATTGAGATTTTTTAAGAACCAAGATCCATCTTCCTCTCCAAAAAAGCTAGAACATGTAGAAAATACTGAAGATGCTAAAGCACTGCTATCTGTTGGCCCTCAGTCTAGAAGTGATAATTATTTGGATCATAATCAATCTGAGTTGCCAAAAGAAAGGCCTTTCGAAGAAACTGGGACTTCTAGTGCACCTAGTTCAGCTCAATTTGAACAAAGAAGGGGAGTATGGAGTTACAATACTGACGAGATTGACCCCTCTGTCATTGATGAGTTACCACCAGAAATTCAACAAGAAGTTCGTGCCTGGCTCAGGCCTCACAAGCGGCAAAATGTAGCGAAACGGGGTTCTAGTATTGCAGATTATTTCTTACCCACAAGGAATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

631

Amino Acids

69.41

Weight (kDa)

5.76

Isoelectric Point (pI)

52.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMS	PF00817	5 - 201	2.2e-31	impB/mucB/samB family
POLH-Rev1_HhH	PF21704	224 - 279	4.6e-23	DNApol eta/Rev1, HhH motif
IMS_HHH_1	PF21999	235 - 279	3.9e-06	DNA polymerase-iota, thumb domain
IMS_C	PF11799	290 - 417	5.2e-09	impB/mucB/samB family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1766
Acc36I	ACCTGC	2 cut(s)	227, 625
AccB1I	GGYRCC	1 cut(s)	858
AccIII	TCCGGA	1 cut(s)	31
AciI	CCGC	2 cut(s)	123, 1831
AclWI	GGATC	2 cut(s)	1529, 1644
AcsI	RAATTY	3 cut(s)	174, 548, 1791
AcuI	CTGAAG	3 cut(s)	363, 1347, 1599
AcyI	GRCGYC	1 cut(s)	859
AfaI	GTAC	1 cut(s)	63
AfiI	CCNNNNNNNGG	2 cut(s)	1364, 1818
AflIII	ACRYGT	2 cut(s)	394, 1564
AhlI	ACTAGT	1 cut(s)	1018
AjnI	CCWGG	4 cut(s)	729, 898, 1494, 1811
AloI	GAACNNNNNNTCC	2 cut(s)	223, 255
Alw21I	GWGCWC	1 cut(s)	1699
Alw26I	GTCTC	1 cut(s)	536
Alw44I	GTGCAC	1 cut(s)	1695
AlwI	GGATC	2 cut(s)	1529, 1644
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	5 cut(s)	111, 1044, 1606, 1667, 1820
ApaLI	GTGCAC	1 cut(s)	1695
ApeKI	GCWGC	4 cut(s)	323, 1024, 1106, 1145
ApoI	RAATTY	3 cut(s)	174, 548, 1791
Asp700I	GAANNNNTTC	4 cut(s)	975, 1070, 1267, 1504
AspLEI	GCGC	2 cut(s)	861, 1351
AspS9I	GGNCC	4 cut(s)	112, 184, 902, 1607
AsuC2I	CCSGG	1 cut(s)	115
AsuII	TTCGAA	1 cut(s)	1674
AvaII	GGWCC	2 cut(s)	184, 902
AxyI	CCTNAGG	1 cut(s)	1094
BaeGI	GKGCMC	2 cut(s)	505, 1699
BaeI	ACNNNNGTAYC	2 cut(s)	988, 1021
BanI	GGYRCC	1 cut(s)	858
BbsI	GAAGAC	3 cut(s)	896, 968, 1476
Bbv12I	GWGCWC	1 cut(s)	1699
BbvI	GCAGC	4 cut(s)	335, 1011, 1093, 1132
BccI	CCATC	3 cut(s)	1264, 1309, 1546
BceAI	ACGGC	3 cut(s)	69, 436, 622
BciT130I	CCWGG	4 cut(s)	731, 900, 1496, 1813
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	536
BcuI	ACTAGT	1 cut(s)	1018
BfaI	CTAG	9 cut(s)	530, 662, 1019, 1452, 1559, 1617, 1692, 1701, 1857
BfmI	CTRYAG	1 cut(s)	779
BfoI	RGCGCY	1 cut(s)	862
BfuAI	ACCTGC	2 cut(s)	227, 625
BisI	GCNGC	5 cut(s)	324, 1025, 1107, 1146, 1832
BlsI	GCNGC	5 cut(s)	325, 1026, 1108, 1147, 1833
Bme1390I	CCNGG	5 cut(s)	115, 731, 900, 1496, 1813
Bme18I	GGWCC	2 cut(s)	184, 902
BmgT120I	GGNCC	4 cut(s)	112, 184, 902, 1607
BmiI	GGNNCC	3 cut(s)	6, 860, 1501
BmrFI	CCNGG	5 cut(s)	115, 731, 900, 1496, 1813
BmrI	ACTGGG	2 cut(s)	188, 1692
BmsI	GCATC	6 cut(s)	110, 310, 573, 1114, 1468, 1573
BmuI	ACTGGG	2 cut(s)	188, 1692
BpiI	GAAGAC	3 cut(s)	896, 968, 1476
BpmI	CTGGAG	2 cut(s)	250, 336
Bpu10I	CCTNAGC	1 cut(s)	1817
Bpu14I	TTCGAA	1 cut(s)	1674
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	115
BsaAI	YACGTR	1 cut(s)	1154
BsaBI	GATNNNNATC	1 cut(s)	1641
BsaHI	GRCGYC	1 cut(s)	859
BsaJI	CCNNGG	4 cut(s)	730, 877, 1186, 1495
BsaWI	WCCGGW	1 cut(s)	31
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 139, 223, 253
Bsc4I	CCNNNNNNNGG	2 cut(s)	1364, 1818
Bse1I	ACTGG	7 cut(s)	194, 233, 808, 944, 1047, 1470, 1687
Bse21I	CCTNAGG	1 cut(s)	1094
Bse3DI	GCAATG	1 cut(s)	567
Bse8I	GATNNNNATC	1 cut(s)	1641
BseAI	TCCGGA	1 cut(s)	31
BseBI	CCWGG	4 cut(s)	731, 900, 1496, 1813
BseDI	CCNNGG	4 cut(s)	730, 877, 1186, 1495
BseGI	GGATG	3 cut(s)	997, 1217, 1301
BseJI	GATNNNNATC	1 cut(s)	1641
BseLI	CCNNNNNNNGG	2 cut(s)	1364, 1818
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	4 cut(s)	141, 1625, 1641, 1831
BseNI	ACTGG	7 cut(s)	194, 233, 808, 944, 1047, 1470, 1687
BseRI	GAGGAG	2 cut(s)	339, 389
BseSI	GKGCMC	2 cut(s)	505, 1699
BseXI	GCAGC	4 cut(s)	335, 1011, 1093, 1132
BseYI	CCCAGC	1 cut(s)	706
BsgI	GTGCAG	2 cut(s)	255, 603
BshFI	GGCC	5 cut(s)	113, 1046, 1608, 1669, 1822
BshNI	GGYRCC	1 cut(s)	858
BsiHKAI	GWGCWC	1 cut(s)	1699
BsiSI	CCGG	2 cut(s)	32, 115
BslFI	GGGAC	3 cut(s)	176, 417, 1699
BslI	CCNNNNNNNGG	2 cut(s)	1364, 1818
BsmAI	GTCTC	1 cut(s)	536
BsmFI	GGGAC	3 cut(s)	176, 417, 1699
BsmI	GAATGC	1 cut(s)	1894
BsnI	GGCC	5 cut(s)	113, 1046, 1608, 1669, 1822
Bsp119I	TTCGAA	1 cut(s)	1674
Bsp1286I	GDGCHC	2 cut(s)	505, 1699
Bsp13I	TCCGGA	1 cut(s)	31
Bsp143I	GATC	5 cut(s)	472, 1407, 1434, 1534, 1636
Bsp19I	CCATGG	1 cut(s)	877
BspACI	CCGC	2 cut(s)	123, 1831
BspANI	GGCC	5 cut(s)	113, 1046, 1608, 1669, 1822
BspCNI	CTCAG	4 cut(s)	142, 1624, 1642, 1830
BspEI	TCCGGA	1 cut(s)	31
BspLI	GGNNCC	3 cut(s)	6, 860, 1501
BspMI	ACCTGC	2 cut(s)	227, 625
BspPI	GGATC	2 cut(s)	1529, 1644
BspQI	GCTCTTC	1 cut(s)	866
BspT104I	TTCGAA	1 cut(s)	1674
BspT107I	GGYRCC	1 cut(s)	858
BsrDI	GCAATG	1 cut(s)	567
BsrI	ACTGG	7 cut(s)	194, 233, 808, 944, 1047, 1470, 1687
BssECI	CCNNGG	4 cut(s)	730, 877, 1186, 1495
BssMI	GATC	5 cut(s)	472, 1407, 1434, 1534, 1636
BssNI	GRCGYC	1 cut(s)	859
BssT1I	CCWWGG	2 cut(s)	877, 1186
Bst2UI	CCWGG	4 cut(s)	731, 900, 1496, 1813
Bst4CI	ACNGT	3 cut(s)	66, 631, 745
Bst6I	CTCTTC	3 cut(s)	866, 1312, 1510
BstACI	GRCGYC	1 cut(s)	859
BstBAI	YACGTR	1 cut(s)	1154
BstBI	TTCGAA	1 cut(s)	1674
BstC8I	GCNNGC	3 cut(s)	565, 588, 1029
BstDEI	CTNAG	7 cut(s)	150, 521, 953, 1094, 1611, 1650, 1817
BstDSI	CCRYGG	1 cut(s)	877
BstENI	CCTNNNNNAGG	1 cut(s)	1816
BstF5I	GGATG	3 cut(s)	997, 1217, 1301
BstH2I	RGCGCY	1 cut(s)	862
BstHHI	GCGC	2 cut(s)	861, 1351
BstKTI	GATC	5 cut(s)	475, 1410, 1437, 1537, 1639
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	5 cut(s)	472, 1407, 1434, 1534, 1636
BstMWI	GCNNNNNNNGC	6 cut(s)	500, 569, 596, 1043, 1456, 1828
BstNI	CCWGG	4 cut(s)	731, 900, 1496, 1813
BstNSI	RCATGY	3 cut(s)	398, 1031, 1568
BstSCI	CCNGG	5 cut(s)	113, 729, 898, 1494, 1811
BstSFI	CTRYAG	1 cut(s)	779
BstSLI	GKGCMC	2 cut(s)	505, 1699
BstV1I	GCAGC	4 cut(s)	335, 1011, 1093, 1132
BstV2I	GAAGAC	3 cut(s)	896, 968, 1476
BstX2I	RGATCY	1 cut(s)	1534
BstXI	CCANNNNNNTGG	1 cut(s)	884
BstYI	RGATCY	1 cut(s)	1534
Bsu36I	CCTNAGG	1 cut(s)	1094
BsuRI	GGCC	5 cut(s)	113, 1046, 1608, 1669, 1822
BtgI	CCRYGG	1 cut(s)	877
BtsCI	GGATG	3 cut(s)	997, 1217, 1301
BtsI	GCAGTG	2 cut(s)	430, 1592
BtsIMutI	CAGTG	5 cut(s)	430, 741, 937, 1054, 1592
BveI	ACCTGC	2 cut(s)	227, 625
Cac8I	GCNNGC	3 cut(s)	565, 588, 1029
CfoI	GCGC	2 cut(s)	861, 1351
Cfr13I	GGNCC	4 cut(s)	112, 184, 902, 1607
Csp6I	GTAC	1 cut(s)	62
CviAII	CATG	7 cut(s)	75, 334, 395, 878, 1028, 1289, 1565
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	7 cut(s)	150, 521, 953, 1094, 1611, 1650, 1817
DinI	GGCGCC	1 cut(s)	860
DpnI	GATC	5 cut(s)	474, 1409, 1436, 1536, 1638
DpnII	GATC	5 cut(s)	472, 1407, 1434, 1534, 1636
DraI	TTTAAA	1 cut(s)	915
DrdI	GACNNNNNNGTC	1 cut(s)	1766
DseDI	GACNNNNNNGTC	1 cut(s)	1766
Eam1104I	CTCTTC	3 cut(s)	866, 1312, 1510
EarI	CTCTTC	3 cut(s)	866, 1312, 1510
Eco130I	CCWWGG	2 cut(s)	877, 1186
Eco147I	AGGCCT	2 cut(s)	1669, 1822
Eco47I	GGWCC	2 cut(s)	184, 902
Eco57I	CTGAAG	3 cut(s)	363, 1347, 1599
Eco81I	CCTNAGG	1 cut(s)	1094
EcoNI	CCTNNNNNAGG	1 cut(s)	1816
EcoRII	CCWGG	4 cut(s)	729, 898, 1494, 1811
EcoT14I	CCWWGG	2 cut(s)	877, 1186
EcoT22I	ATGCAT	1 cut(s)	1894
EgeI	GGCGCC	1 cut(s)	860
EheI	GGCGCC	1 cut(s)	860
ErhI	CCWWGG	2 cut(s)	877, 1186
FaeI	CATG	7 cut(s)	78, 337, 398, 881, 1031, 1292, 1568
FalI	AAGNNNNNCTT	4 cut(s)	291, 323, 1113, 1145
FaqI	GGGAC	3 cut(s)	176, 417, 1699
FatI	CATG	7 cut(s)	74, 333, 394, 877, 1027, 1288, 1564
Fnu4HI	GCNGC	5 cut(s)	324, 1025, 1107, 1146, 1832
FokI	GGATG	3 cut(s)	1004, 1204, 1288
Fsp4HI	GCNGC	5 cut(s)	324, 1025, 1107, 1146, 1832
FspBI	CTAG	9 cut(s)	530, 662, 1019, 1452, 1559, 1617, 1692, 1701, 1857
GlaI	GCGC	2 cut(s)	860, 1350
GluI	GCNGC	5 cut(s)	324, 1025, 1107, 1146, 1832
GsaI	CCCAGC	1 cut(s)	710
GsuI	CTGGAG	2 cut(s)	250, 336
HaeII	RGCGCY	1 cut(s)	862
HaeIII	GGCC	5 cut(s)	113, 1046, 1608, 1669, 1822
HapII	CCGG	2 cut(s)	32, 115
HhaI	GCGC	2 cut(s)	861, 1351
Hin1I	GRCGYC	1 cut(s)	859
Hin1II	CATG	7 cut(s)	78, 337, 398, 881, 1031, 1292, 1568
Hin6I	GCGC	2 cut(s)	859, 1349
HinP1I	GCGC	2 cut(s)	859, 1349
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HindIII	AAGCTT	1 cut(s)	358
HinfI	GANTC	7 cut(s)	152, 405, 665, 795, 1052, 1058, 1343
HpaI	GTTAAC	1 cut(s)	739
HpaII	CCGG	2 cut(s)	32, 115
Hpy166II	GTNNAC	3 cut(s)	739, 971, 1697
Hpy188I	TCNGA	7 cut(s)	244, 749, 769, 870, 1057, 1384, 1651
Hpy188III	TCNNGA	6 cut(s)	32, 308, 353, 479, 1260, 1617
Hpy8I	GTNNAC	3 cut(s)	739, 971, 1697
Hpy99I	CGWCG	1 cut(s)	480
HpyAV	CCTTC	6 cut(s)	262, 532, 872, 1086, 1371, 1719
HpyCH4III	ACNGT	3 cut(s)	66, 631, 745
HpyCH4IV	ACGT	3 cut(s)	973, 1003, 1153
HpyF10VI	GCNNNNNNNGC	6 cut(s)	500, 569, 596, 1043, 1456, 1828
HpyF3I	CTNAG	7 cut(s)	150, 521, 953, 1094, 1611, 1650, 1817
HpySE526I	ACGT	3 cut(s)	973, 1003, 1153
Hsp92I	GRCGYC	1 cut(s)	859
Hsp92II	CATG	7 cut(s)	78, 337, 398, 881, 1031, 1292, 1568
HspAI	GCGC	2 cut(s)	859, 1349
KasI	GGCGCC	1 cut(s)	858
Kpn2I	TCCGGA	1 cut(s)	31
KspAI	GTTAAC	1 cut(s)	739
Kzo9I	GATC	5 cut(s)	472, 1407, 1434, 1534, 1636
LguI	GCTCTTC	1 cut(s)	866
LmnI	GCTCC	2 cut(s)	16, 352
Lsp1109I	GCAGC	4 cut(s)	335, 1011, 1093, 1132
LweI	GCATC	6 cut(s)	110, 310, 573, 1114, 1468, 1573
MaeI	CTAG	9 cut(s)	530, 662, 1019, 1452, 1559, 1617, 1692, 1701, 1857
MaeII	ACGT	3 cut(s)	973, 1003, 1153
MaeIII	GTNAC	4 cut(s)	390, 1413, 1739, 1779
MalI	GATC	5 cut(s)	474, 1409, 1436, 1536, 1638
MboI	GATC	5 cut(s)	472, 1407, 1434, 1534, 1636
MfeI	CAATTG	3 cut(s)	291, 369, 980
MflI	RGATCY	1 cut(s)	1534
MhlI	GDGCHC	2 cut(s)	505, 1699
Mly113I	GGCGCC	1 cut(s)	859
MlyI	GAGTC	3 cut(s)	161, 399, 674
MmeI	TCCRAC	1 cut(s)	727
Mph1103I	ATGCAT	1 cut(s)	1894
MroI	TCCGGA	1 cut(s)	31
MroXI	GAANNNNTTC	4 cut(s)	975, 1070, 1267, 1504
MseI	TTAA	7 cut(s)	38, 678, 738, 914, 945, 1131, 1524
MspA1I	CMGCKG	2 cut(s)	181, 563
MspI	CCGG	2 cut(s)	32, 115
MspR9I	CCNGG	5 cut(s)	115, 731, 900, 1496, 1813
MunI	CAATTG	3 cut(s)	291, 369, 980
Mva1269I	GAATGC	1 cut(s)	1894
MvaI	CCWGG	4 cut(s)	731, 900, 1496, 1813
MwoI	GCNNNNNNNGC	6 cut(s)	500, 569, 596, 1043, 1456, 1828
NarI	GGCGCC	1 cut(s)	859
NciI	CCSGG	1 cut(s)	115
NcoI	CCATGG	1 cut(s)	877
NdeII	GATC	5 cut(s)	472, 1407, 1434, 1534, 1636
NlaIII	CATG	7 cut(s)	78, 337, 398, 881, 1031, 1292, 1568
NlaIV	GGNNCC	3 cut(s)	6, 860, 1501
NmuCI	GTSAC	1 cut(s)	390
NsiI	ATGCAT	1 cut(s)	1894
NspI	RCATGY	3 cut(s)	398, 1031, 1568
NspV	TTCGAA	1 cut(s)	1674
PaeI	GCATGC	1 cut(s)	1031
PceI	AGGCCT	2 cut(s)	1669, 1822
PciI	ACATGT	2 cut(s)	394, 1564
PciSI	GCTCTTC	1 cut(s)	866
PctI	GAATGC	1 cut(s)	1894
PdmI	GAANNNNTTC	4 cut(s)	975, 1070, 1267, 1504
PfeI	GAWTC	4 cut(s)	795, 1052, 1058, 1343
PfoI	TCCNGGA	1 cut(s)	898
PkrI	GCNGC	5 cut(s)	325, 1026, 1108, 1147, 1833
PleI	GAGTC	3 cut(s)	160, 399, 673
PluTI	GGCGCC	1 cut(s)	862
PpsI	GAGTC	3 cut(s)	160, 399, 673
Ppu21I	YACGTR	1 cut(s)	1154
PscI	ACATGT	2 cut(s)	394, 1564
Psp6I	CCWGG	4 cut(s)	729, 898, 1494, 1811
PspFI	CCCAGC	1 cut(s)	706
PspGI	CCWGG	4 cut(s)	729, 898, 1494, 1811
PspN4I	GGNNCC	3 cut(s)	6, 860, 1501
PspPI	GGNCC	4 cut(s)	112, 184, 902, 1607
PsuI	RGATCY	1 cut(s)	1534
PvuII	CAGCTG	2 cut(s)	181, 563
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	866
SaqAI	TTAA	7 cut(s)	38, 678, 738, 914, 945, 1131, 1524
SatI	GCNGC	5 cut(s)	324, 1025, 1107, 1146, 1832
Sau3AI	GATC	5 cut(s)	472, 1407, 1434, 1534, 1636
Sau96I	GGNCC	4 cut(s)	112, 184, 902, 1607
SchI	GAGTC	3 cut(s)	161, 399, 674
ScrFI	CCNGG	5 cut(s)	115, 731, 900, 1496, 1813
SduI	GDGCHC	2 cut(s)	505, 1699
SfaNI	GCATC	6 cut(s)	110, 310, 573, 1114, 1468, 1573
SfcI	CTRYAG	1 cut(s)	779
SfoI	GGCGCC	1 cut(s)	860
SfuI	TTCGAA	1 cut(s)	1674
SinI	GGWCC	2 cut(s)	184, 902
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SpeI	ACTAGT	1 cut(s)	1018
SphI	GCATGC	1 cut(s)	1031
SseBI	AGGCCT	2 cut(s)	1669, 1822
SsiI	CCGC	2 cut(s)	123, 1831
SspDI	GGCGCC	1 cut(s)	858
SspI	AATATT	1 cut(s)	1512
SspMI	CTAG	9 cut(s)	530, 662, 1019, 1452, 1559, 1617, 1692, 1701, 1857
StuI	AGGCCT	2 cut(s)	1669, 1822
StyD4I	CCNGG	5 cut(s)	113, 729, 898, 1494, 1811
StyI	CCWWGG	2 cut(s)	877, 1186
TaaI	ACNGT	3 cut(s)	66, 631, 745
TaiI	ACGT	3 cut(s)	976, 1006, 1156
TaqI	TCGA	5 cut(s)	274, 408, 1310, 1410, 1674
TauI	GCSGC	1 cut(s)	1834
TfiI	GAWTC	4 cut(s)	795, 1052, 1058, 1343
Tru1I	TTAA	7 cut(s)	38, 678, 738, 914, 945, 1131, 1524
Tru9I	TTAA	7 cut(s)	38, 678, 738, 914, 945, 1131, 1524
TscAI	CASTG	5 cut(s)	430, 748, 944, 1054, 1599
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	4 cut(s)	323, 1024, 1106, 1145
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	7 cut(s)	623, 701, 963, 1008, 1277, 1292, 1324
TspGWI	ACGGA	1 cut(s)	807
TspRI	CASTG	5 cut(s)	430, 748, 944, 1054, 1599
VneI	GTGCAC	1 cut(s)	1695
VpaK11BI	GGWCC	2 cut(s)	184, 902
XagI	CCTNNNNNAGG	1 cut(s)	1816
XapI	RAATTY	3 cut(s)	174, 548, 1791
XbaI	TCTAGA	1 cut(s)	1616
XceI	RCATGY	3 cut(s)	398, 1031, 1568
XmnI	GAANNNNTTC	4 cut(s)	975, 1070, 1267, 1504
XspI	CTAG	9 cut(s)	530, 662, 1019, 1452, 1559, 1617, 1692, 1701, 1857
Zsp2I	ATGCAT	1 cut(s)	1894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.