Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Forward (+)

28963040 .. 28967955

Gene Structure 4916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37820

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGCTAACACTGTTGGCAACTCCTGGTGGTGGAAGATTTTTGATCTGATTGCCCCATGTTTGCGATATTTAAAATGTGTTTTGCAAACTAAAACTGTGCTTTACTTTACGGTGGAACAAAGGAAAAATCCGGAGTTAAGGGGCTTACCAACGGCTGTGGTACAGTATAACTCATGGCAAGGTGGGGGCTTGATTGCTGTCAGCTATGAGGCCCGGAAATATGGTGTGAAGCGTTCAATGCAAGGTGCTGAGTCAAAGAAAGTCTTCCCAGAAATTCAGCTGGTCCAAGTCCCTGTAGCACGTGGTAAAGCTGACCTGAACTCATACCGGAATGCAGGTTCAGAGGTGGTTTCTATCCTATCAAGGAAGGGTCTATGTGAGAGGGCTTCAATTGACGAAGTGTATCTTGACCTTAACGATGCAGCAGAAACCATGTTAGCTGAAGCTCCTCCAGAAAGCTTGGAAGAAATTGAGGAGGAAGCTCTCAAGTCACATGTTTTGGGGCTCGATAATGAGGACGGAAGTGAAGCCAAAGAAAATGTGAGGAAATGGCTTTGCAAAAGCAATGCTGATCTATGTGATAAGCTTCTAGCTTGTGGGGCTCTCATTGTTGCAGAACTTGGGTTGCTAGTGTTGAAGGAGACAGAATTTACTTGTTCAGCTGGCATTGCTCATAATAAGGTTCAACACTGGCTTAATGAACTATGTGAAGATCTGAGTGAACGTCTTCAATTGGACTCGGATGAAAACAAAAGGATTGCTCATACGCTAGTGCTGCATGCCACAGCATACAAGGCCAGTGATTCAGATTCACAGAAGAAGTTCCCTTCTAAGTCTTCTCCCCTAAGGTATGGGGCTGCCAAGATACAAGAGGATGCTCTTAGCCTCTTTCAAGCTGCATTATGTGAATACTTGGGTTTGTACACAGCTAAAATTCAAGGAAGTCAAAATAACCGATGGGGAGTAACACCCCTCTCCGTTTCAGCAAGTAAAATTCTTCCCATACCATCAGGAACAGCTTCAATTGCAAAATACTTTCATGGTCATCAGCCATCCTCTTCCAGAAAGCAATCACAGGATAATTTCATAGAAGAATCTTCTCCCATGCCGCCTTCAGGTAATGAGAACTACTCGGAGGTGAATGTAACTACACCACAAATTGAGTTCCCTTATAAAGAAACTACGATCAAGTATGCTGTGCCTAGTTTGCATCAACTGGAAGGCAAAAAGGATTTGCTGAATGACCAGAAACCATGTTGCTCTCCAAAAAATCAGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

426

Amino Acids

47.2

Weight (kDa)

6.0

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMS	PF00817	35 - 228	2.4e-28	impB/mucB/samB family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1173
Acc36I	ACCTGC	1 cut(s)	326
AccIII	TCCGGA	1 cut(s)	130
AciI	CCGC	1 cut(s)	1109
AcsI	RAATTY	4 cut(s)	273, 647, 933, 993
AcuI	CTGAAG	2 cut(s)	462, 1098
AcvI	CACGTG	1 cut(s)	302
AfaI	GTAC	2 cut(s)	162, 923
AfiI	CCNNNNNNNGG	2 cut(s)	30, 1115
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	8 cut(s)	237, 390, 637, 686, 731, 893, 938, 1023
AjnI	CCWGG	1 cut(s)	23
AloI	GAACNNNNNNTCC	2 cut(s)	322, 354
Alw26I	GTCTC	1 cut(s)	635
Aor13HI	TCCGGA	1 cut(s)	130
AoxI	GGCC	2 cut(s)	210, 795
ApeKI	GCWGC	4 cut(s)	422, 775, 857, 896
ApoI	RAATTY	4 cut(s)	273, 647, 933, 993
Asp700I	GAANNNNTTC	4 cut(s)	263, 726, 821, 1018
AspS9I	GGNCC	2 cut(s)	211, 283
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	1150
AvaII	GGWCC	1 cut(s)	283
AxyI	CCTNAGG	1 cut(s)	845
BanII	GRGCYC	2 cut(s)	507, 604
BbrPI	CACGTG	1 cut(s)	302
BbsI	GAAGAC	3 cut(s)	256, 719, 828
BbvI	GCAGC	4 cut(s)	434, 762, 844, 883
BccI	CCATC	3 cut(s)	951, 1015, 1060
BceAI	ACGGC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	635
BfaI	CTAG	4 cut(s)	590, 629, 770, 1203
BfmI	CTRYAG	1 cut(s)	294
BfuAI	ACCTGC	1 cut(s)	326
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	5 cut(s)	423, 776, 858, 897, 1109
BlsI	GCNGC	5 cut(s)	424, 777, 859, 898, 1110
Bme1390I	CCNGG	2 cut(s)	25, 214
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	211, 283
BmrFI	CCNGG	2 cut(s)	25, 214
BmsI	GCATC	3 cut(s)	409, 865, 1219
BpiI	GAAGAC	3 cut(s)	256, 719, 828
BplI	GAGNNNNNCTC	2 cut(s)	1115, 1147
BpmI	CTGGAG	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	214
BsaAI	YACGTR	1 cut(s)	302
BsaWI	WCCGGW	2 cut(s)	130, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 1115
Bse1I	ACTGG	3 cut(s)	695, 798, 1221
Bse21I	CCTNAGG	1 cut(s)	845
Bse3DI	GCAATG	2 cut(s)	571, 666
BseAI	TCCGGA	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	25
BseGI	GGATG	3 cut(s)	748, 880, 1052
BseLI	CCNNNNNNNGG	2 cut(s)	30, 1115
BseMI	GCAATG	2 cut(s)	571, 666
BseMII	CTCAG	2 cut(s)	240, 707
BseNI	ACTGG	3 cut(s)	695, 798, 1221
BseRI	GAGGAG	2 cut(s)	438, 488
BseXI	GCAGC	4 cut(s)	434, 762, 844, 883
BshFI	GGCC	2 cut(s)	212, 797
BsiSI	CCGG	3 cut(s)	131, 214, 328
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	30, 1115
BsmAI	GTCTC	1 cut(s)	635
BsmFI	GGGAC	1 cut(s)	275
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	2 cut(s)	212, 797
Bsp1286I	GDGCHC	2 cut(s)	507, 604
Bsp13I	TCCGGA	1 cut(s)	130
Bsp1407I	TGTACA	1 cut(s)	921
Bsp143I	GATC	4 cut(s)	43, 571, 712, 1185
BspACI	CCGC	1 cut(s)	1109
BspANI	GGCC	2 cut(s)	212, 797
BspCNI	CTCAG	2 cut(s)	241, 708
BspEI	TCCGGA	1 cut(s)	130
BspMI	ACCTGC	1 cut(s)	326
BsrDI	GCAATG	2 cut(s)	571, 666
BsrGI	TGTACA	1 cut(s)	921
BsrI	ACTGG	3 cut(s)	695, 798, 1221
BssMI	GATC	4 cut(s)	43, 571, 712, 1185
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	4 cut(s)	13, 97, 112, 165
Bst6I	CTCTTC	1 cut(s)	1063
BstAUI	TGTACA	1 cut(s)	921
BstBAI	YACGTR	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	664, 780
BstDEI	CTNAG	5 cut(s)	249, 716, 831, 845, 881
BstF5I	GGATG	3 cut(s)	748, 880, 1052
BstKTI	GATC	4 cut(s)	46, 574, 715, 1188
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	4 cut(s)	43, 571, 712, 1185
BstMWI	GCNNNNNNNGC	7 cut(s)	238, 599, 668, 775, 794, 1025, 1207
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	2 cut(s)	497, 782
BstSCI	CCNGG	2 cut(s)	23, 212
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	4 cut(s)	434, 762, 844, 883
BstV2I	GAAGAC	3 cut(s)	256, 719, 828
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
Bsu36I	CCTNAGG	1 cut(s)	845
BsuRI	GGCC	2 cut(s)	212, 797
BtsCI	GGATG	3 cut(s)	748, 880, 1052
BtsIMutI	CAGTG	3 cut(s)	9, 688, 805
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	2 cut(s)	664, 780
Cfr13I	GGNCC	2 cut(s)	211, 283
Csp6I	GTAC	2 cut(s)	161, 922
CspCI	CAANNNNNGTGG	2 cut(s)	138, 173
CviAII	CATG	8 cut(s)	57, 174, 433, 494, 779, 1040, 1105, 1254
CviQI	GTAC	2 cut(s)	161, 922
DdeI	CTNAG	5 cut(s)	249, 716, 831, 845, 881
DpnI	GATC	4 cut(s)	45, 573, 714, 1187
DpnII	GATC	4 cut(s)	43, 571, 712, 1185
DraI	TTTAAA	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	1063
EarI	CTCTTC	1 cut(s)	1063
Eco24I	GRGCYC	2 cut(s)	507, 604
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	2 cut(s)	462, 1098
Eco72I	CACGTG	1 cut(s)	302
Eco81I	CCTNAGG	1 cut(s)	845
EcoRII	CCWGG	1 cut(s)	23
EcoT38I	GRGCYC	2 cut(s)	507, 604
FaeI	CATG	8 cut(s)	60, 177, 436, 497, 782, 1043, 1108, 1257
FalI	AAGNNNNNCTT	4 cut(s)	248, 280, 390, 422
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	8 cut(s)	56, 173, 432, 493, 778, 1039, 1104, 1253
Fnu4HI	GCNGC	5 cut(s)	423, 776, 858, 897, 1109
FokI	GGATG	3 cut(s)	755, 887, 1039
FriOI	GRGCYC	2 cut(s)	507, 604
Fsp4HI	GCNGC	5 cut(s)	423, 776, 858, 897, 1109
FspBI	CTAG	4 cut(s)	590, 629, 770, 1203
GluI	GCNGC	5 cut(s)	423, 776, 858, 897, 1109
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	2 cut(s)	212, 797
HapII	CCGG	3 cut(s)	131, 214, 328
Hin1II	CATG	8 cut(s)	60, 177, 436, 497, 782, 1043, 1108, 1257
HindIII	AAGCTT	2 cut(s)	457, 584
HinfI	GANTC	5 cut(s)	251, 737, 803, 809, 1094
HpaII	CCGG	3 cut(s)	131, 214, 328
HphI	GGTGA	1 cut(s)	1150
Hpy166II	GTNNAC	2 cut(s)	722, 924
Hpy188I	TCNGA	6 cut(s)	48, 343, 717, 742, 808, 1135
Hpy188III	TCNNGA	5 cut(s)	131, 407, 452, 1011, 1062
Hpy8I	GTNNAC	2 cut(s)	722, 924
HpyAV	CCTTC	5 cut(s)	361, 631, 837, 1122, 1214
HpyCH4III	ACNGT	4 cut(s)	13, 97, 112, 165
HpyCH4IV	ACGT	2 cut(s)	301, 724
HpyF10VI	GCNNNNNNNGC	7 cut(s)	238, 599, 668, 775, 794, 1025, 1207
HpyF3I	CTNAG	5 cut(s)	249, 716, 831, 845, 881
HpySE526I	ACGT	2 cut(s)	301, 724
Hsp92II	CATG	8 cut(s)	60, 177, 436, 497, 782, 1043, 1108, 1257
Kpn2I	TCCGGA	1 cut(s)	130
Kzo9I	GATC	4 cut(s)	43, 571, 712, 1185
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	4 cut(s)	434, 762, 844, 883
LweI	GCATC	3 cut(s)	409, 865, 1219
MaeI	CTAG	4 cut(s)	590, 629, 770, 1203
MaeII	ACGT	2 cut(s)	301, 724
MaeIII	GTNAC	3 cut(s)	489, 964, 1144
MalI	GATC	4 cut(s)	45, 573, 714, 1187
MboI	GATC	4 cut(s)	43, 571, 712, 1185
MfeI	CAATTG	3 cut(s)	390, 731, 1023
MflI	RGATCY	1 cut(s)	712
MhlI	GDGCHC	2 cut(s)	507, 604
MlyI	GAGTC	2 cut(s)	260, 731
MroI	TCCGGA	1 cut(s)	130
MroXI	GAANNNNTTC	4 cut(s)	263, 726, 821, 1018
MseI	TTAA	4 cut(s)	71, 137, 414, 696
MspA1I	CMGCKG	2 cut(s)	280, 662
MspI	CCGG	3 cut(s)	131, 214, 328
MspR9I	CCNGG	2 cut(s)	25, 214
MunI	CAATTG	3 cut(s)	390, 731, 1023
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	7 cut(s)	238, 599, 668, 775, 794, 1025, 1207
NciI	CCSGG	1 cut(s)	214
NdeII	GATC	4 cut(s)	43, 571, 712, 1185
NlaIII	CATG	8 cut(s)	60, 177, 436, 497, 782, 1043, 1108, 1257
NmuCI	GTSAC	1 cut(s)	489
NspI	RCATGY	2 cut(s)	497, 782
PaeI	GCATGC	1 cut(s)	782
PciI	ACATGT	1 cut(s)	493
PctI	GAATGC	1 cut(s)	337
PdmI	GAANNNNTTC	4 cut(s)	263, 726, 821, 1018
PfeI	GAWTC	3 cut(s)	803, 809, 1094
PkrI	GCNGC	5 cut(s)	424, 777, 859, 898, 1110
PleI	GAGTC	2 cut(s)	259, 731
PmaCI	CACGTG	1 cut(s)	302
PmlI	CACGTG	1 cut(s)	302
PpsI	GAGTC	2 cut(s)	259, 731
Ppu21I	YACGTR	1 cut(s)	302
PscI	ACATGT	1 cut(s)	493
PsiI	TTATAA	1 cut(s)	1173
Psp6I	CCWGG	1 cut(s)	23
PspCI	CACGTG	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	23
PspPI	GGNCC	2 cut(s)	211, 283
PsuI	RGATCY	1 cut(s)	712
PvuII	CAGCTG	2 cut(s)	280, 662
RsaI	GTAC	2 cut(s)	162, 923
RsaNI	GTAC	2 cut(s)	161, 922
SaqAI	TTAA	4 cut(s)	71, 137, 414, 696
SatI	GCNGC	5 cut(s)	423, 776, 858, 897, 1109
Sau3AI	GATC	4 cut(s)	43, 571, 712, 1185
Sau96I	GGNCC	2 cut(s)	211, 283
SchI	GAGTC	2 cut(s)	260, 731
ScrFI	CCNGG	2 cut(s)	25, 214
SduI	GDGCHC	2 cut(s)	507, 604
SfaNI	GCATC	3 cut(s)	409, 865, 1219
SfcI	CTRYAG	1 cut(s)	294
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
SphI	GCATGC	1 cut(s)	782
SsiI	CCGC	1 cut(s)	1109
SspMI	CTAG	4 cut(s)	590, 629, 770, 1203
StyD4I	CCNGG	2 cut(s)	23, 212
TaaI	ACNGT	4 cut(s)	13, 97, 112, 165
TaiI	ACGT	2 cut(s)	304, 727
TaqI	TCGA	1 cut(s)	507
TatI	WGTACW	1 cut(s)	921
TauI	GCSGC	1 cut(s)	1111
TfiI	GAWTC	3 cut(s)	803, 809, 1094
Tru1I	TTAA	4 cut(s)	71, 137, 414, 696
Tru9I	TTAA	4 cut(s)	71, 137, 414, 696
TscAI	CASTG	3 cut(s)	16, 695, 805
TseFI	GTSAC	1 cut(s)	489
TseI	GCWGC	4 cut(s)	422, 775, 857, 896
Tsp45I	GTSAC	1 cut(s)	489
TspDTI	ATGAA	4 cut(s)	714, 759, 1028, 1075
TspGWI	ACGGA	2 cut(s)	534, 967
TspRI	CASTG	3 cut(s)	16, 695, 805
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	4 cut(s)	273, 647, 933, 993
XceI	RCATGY	2 cut(s)	497, 782
XmnI	GAANNNNTTC	4 cut(s)	263, 726, 821, 1018
XspI	CTAG	4 cut(s)	590, 629, 770, 1203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.