Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Forward (+)

16249243 .. 16257158

Gene Structure 7916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G013710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGATGAAATATTTCGTACATTCATGGTAATCTCATCTGATATGAGAGAAATGGTGGAGCAAAGGAAAAATCCGGAGTTAAGGGGCTTACCTACGGCTGTGGTACAGTATAACTCATGGCAAGGTGGGGGCTTGATTGCTGTCAGTTATGACTATGAGACCCGGAGATGTGGTGTGAAACGTTCTATGCGAGGTGCTGAATCAAAGCAAGTCTGCCCACAAATTCAGCTGGTCCAAGTCCCAGTAGCACGGGGTAAAGCTGACCTGAACTCATACTGGAGTGCAGGTTCAGAGGTGGTTTCTATTCTATCAAGGAAGGGTCGATGCGAAAGGGCTTCAATTGACGAAGTGTATCTTGACCTTACTGATGCAGCAGAGACCATGTTAGCTGAAGCTCCTCCAGAAAGGTTGGAAGCGATTGAGGTGGAAGCTCTCAAGTCACATGTTTTGGGGCTTGATAACGAGGCCTTTGGACATGACGGAAGTGAAGCCAAAGAAAATGCGAGTAGATGGCTCTGCAAAAGCAATGCTGATCGCCGTGATAAGCTGCTAGCTTGTGGGGCTCTCATTGTTGCAGAACTTAGGAGACAGAATTCACTTGTTCAGCTGGCATCGCTCATAATAAGGAAACAGTTTGGAGGAGAGCTGGGGAGTAGTTTACAAAGTGTTTTGGGTGTTAACACTGTTGGAGATTCATTGCAGTTTTCAGAGGAAAAGCGACAAGAACACTATGGAATCAATACGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

249

Amino Acids

27.57

Weight (kDa)

5.59

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMS	PF00817	19 - 139	3.5e-20	impB/mucB/samB family
POLH-Rev1_HhH	PF21704	210 - 249	3.8e-07	DNApol eta/Rev1, HhH motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	275
AccIII	TCCGGA	1 cut(s)	73
AclI	AACGTT	1 cut(s)	181
AcsI	RAATTY	2 cut(s)	222, 592
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	2 cut(s)	19, 105
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	1 cut(s)	339
AloI	GAACNNNNNNTCC	2 cut(s)	271, 303
AluBI	AGCT	9 cut(s)	229, 260, 389, 395, 431, 547, 554, 607, 646
AluI	AGCT	9 cut(s)	229, 260, 389, 395, 431, 547, 554, 607, 646
Alw26I	GTCTC	3 cut(s)	152, 371, 580
Aor13HI	TCCGGA	1 cut(s)	73
AoxI	GGCC	1 cut(s)	465
ApeKI	GCWGC	2 cut(s)	371, 547
ApoI	RAATTY	2 cut(s)	222, 592
Asp700I	GAANNNNTTC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	163
AsuNHI	GCTAGC	1 cut(s)	550
AvaII	GGWCC	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	565
BbvI	GCAGC	2 cut(s)	383, 534
BccI	CCATC	1 cut(s)	504
BceAI	ACGGC	2 cut(s)	111, 522
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	3 cut(s)	152, 371, 580
BfaI	CTAG	1 cut(s)	551
BfuAI	ACCTGC	1 cut(s)	275
BisI	GCNGC	2 cut(s)	372, 548
BlsI	GCNGC	2 cut(s)	373, 549
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	163
BmrI	ACTGGG	1 cut(s)	236
BmsI	GCATC	3 cut(s)	314, 358, 620
BmtI	GCTAGC	1 cut(s)	554
BmuI	ACTGGG	1 cut(s)	236
BpmI	CTGGAG	2 cut(s)	298, 384
BpuEI	CTTGAG	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	163
BsaI	GGTCTC	2 cut(s)	152, 371
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	4 cut(s)	157, 187, 271, 301
Bse1I	ACTGG	2 cut(s)	242, 281
Bse3DI	GCAATG	2 cut(s)	532, 695
BseAI	TCCGGA	1 cut(s)	73
BseGI	GGATG	1 cut(s)	10
BseMI	GCAATG	2 cut(s)	532, 695
BseNI	ACTGG	2 cut(s)	242, 281
BseRI	GAGGAG	2 cut(s)	387, 654
BseXI	GCAGC	2 cut(s)	383, 534
BseYI	CCCAGC	1 cut(s)	646
BsgI	GTGCAG	1 cut(s)	303
BshFI	GGCC	1 cut(s)	467
BsiSI	CCGG	2 cut(s)	74, 163
BslFI	GGGAC	1 cut(s)	224
BsmAI	GTCTC	3 cut(s)	152, 371, 580
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	467
Bso31I	GGTCTC	2 cut(s)	152, 371
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	532
BspANI	GGCC	1 cut(s)	467
BspEI	TCCGGA	1 cut(s)	73
BspMI	ACCTGC	1 cut(s)	275
BspOI	GCTAGC	1 cut(s)	554
BspTNI	GGTCTC	2 cut(s)	152, 371
BsrDI	GCAATG	2 cut(s)	532, 695
BsrI	ACTGG	2 cut(s)	242, 281
BssMI	GATC	1 cut(s)	532
Bst4CI	ACNGT	3 cut(s)	108, 633, 685
BstC8I	GCNNGC	2 cut(s)	552, 609
BstDEI	CTNAG	1 cut(s)	581
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	535
BstMAI	GTCTC	3 cut(s)	152, 371, 580
BstMBI	GATC	1 cut(s)	532
BstMWI	GCNNNNNNNGC	2 cut(s)	560, 613
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	383, 534
BsuRI	GGCC	1 cut(s)	467
BtgZI	GCGATG	1 cut(s)	597
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	681
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	2 cut(s)	552, 609
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	18, 104
CviAII	CATG	5 cut(s)	25, 117, 382, 443, 476
CviQI	GTAC	2 cut(s)	18, 104
DdeI	CTNAG	1 cut(s)	581
DpnI	GATC	1 cut(s)	534
DpnII	GATC	1 cut(s)	532
Eco147I	AGGCCT	1 cut(s)	467
Eco24I	GRGCYC	1 cut(s)	565
Eco31I	GGTCTC	2 cut(s)	152, 371
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	411
EcoRI	GAATTC	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	565
FaeI	CATG	5 cut(s)	28, 120, 385, 446, 479
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	5 cut(s)	24, 116, 381, 442, 475
Fnu4HI	GCNGC	2 cut(s)	372, 548
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	2 cut(s)	372, 548
FspBI	CTAG	1 cut(s)	551
GluI	GCNGC	2 cut(s)	372, 548
GsaI	CCCAGC	1 cut(s)	650
GsuI	CTGGAG	2 cut(s)	298, 384
HaeIII	GGCC	1 cut(s)	467
HapII	CCGG	2 cut(s)	74, 163
Hin1II	CATG	5 cut(s)	28, 120, 385, 446, 479
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HinfI	GANTC	3 cut(s)	200, 692, 735
HpaI	GTTAAC	1 cut(s)	679
HpaII	CCGG	2 cut(s)	74, 163
Hpy166II	GTNNAC	2 cut(s)	659, 679
Hpy188I	TCNGA	3 cut(s)	40, 292, 709
Hpy188III	TCNNGA	3 cut(s)	74, 356, 401
Hpy8I	GTNNAC	2 cut(s)	659, 679
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	3 cut(s)	108, 633, 685
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	5 cut(s)	284, 371, 519, 575, 700
HpyF10VI	GCNNNNNNNGC	2 cut(s)	560, 613
HpyF3I	CTNAG	1 cut(s)	581
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	5 cut(s)	28, 120, 385, 446, 479
Kpn2I	TCCGGA	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	679
Kzo9I	GATC	1 cut(s)	532
LmnI	GCTCC	2 cut(s)	58, 400
Lsp1109I	GCAGC	2 cut(s)	383, 534
LweI	GCATC	3 cut(s)	314, 358, 620
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	438
MalI	GATC	1 cut(s)	534
MboI	GATC	1 cut(s)	532
MfeI	CAATTG	1 cut(s)	339
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	3 cut(s)	222, 339, 592
MmeI	TCCRAC	2 cut(s)	390, 667
MnlI	CCTC	7 cut(s)	185, 286, 408, 415, 457, 632, 703
MroI	TCCGGA	1 cut(s)	73
MroXI	GAANNNNTTC	1 cut(s)	12
MseI	TTAA	2 cut(s)	80, 678
MspA1I	CMGCKG	2 cut(s)	229, 607
MspI	CCGG	2 cut(s)	74, 163
MspR9I	CCNGG	1 cut(s)	163
MunI	CAATTG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	560, 613
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	1 cut(s)	532
NheI	GCTAGC	1 cut(s)	550
NlaIII	CATG	5 cut(s)	28, 120, 385, 446, 479
NmuCI	GTSAC	1 cut(s)	438
NspI	RCATGY	1 cut(s)	446
PceI	AGGCCT	1 cut(s)	467
PciI	ACATGT	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	3 cut(s)	200, 692, 735
PkrI	GCNGC	2 cut(s)	373, 549
PscI	ACATGT	1 cut(s)	442
Psp1406I	AACGTT	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	646
PspPI	GGNCC	1 cut(s)	232
PvuII	CAGCTG	2 cut(s)	229, 607
RsaI	GTAC	2 cut(s)	19, 105
RsaNI	GTAC	2 cut(s)	18, 104
SaqAI	TTAA	2 cut(s)	80, 678
SatI	GCNGC	2 cut(s)	372, 548
Sau3AI	GATC	1 cut(s)	532
Sau96I	GGNCC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	565
SfaNI	GCATC	3 cut(s)	314, 358, 620
SinI	GGWCC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	3 cut(s)	222, 339, 592
SseBI	AGGCCT	1 cut(s)	467
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	1 cut(s)	551
StuI	AGGCCT	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	161
TaaI	ACNGT	3 cut(s)	108, 633, 685
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	322
TasI	AATT	3 cut(s)	222, 339, 592
TfiI	GAWTC	3 cut(s)	200, 692, 735
Tru1I	TTAA	2 cut(s)	80, 678
Tru9I	TTAA	2 cut(s)	80, 678
TscAI	CASTG	1 cut(s)	688
TseFI	GTSAC	1 cut(s)	438
TseI	GCWGC	2 cut(s)	371, 547
Tsp45I	GTSAC	1 cut(s)	438
TspDTI	ATGAA	3 cut(s)	13, 21, 684
TspGWI	ACGGA	1 cut(s)	495
TspRI	CASTG	1 cut(s)	688
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	222, 592
XceI	RCATGY	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.