Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Reverse (-)

47567183 .. 47572914

Gene Structure 5732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G022470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCAGTGCTTTCATATTCCTCGATCTCTCTGTTTTACGAAAGCCCAACCCACAGCTGACAACCCGAAAGGCCTGCATATAAACTGGGACAGAGCAAACCTTTATTCCCCGAGTCGCTTCTCATTTTTTGGCTGCCCAGAAATCCAGCTCGTCCAACTCCCAGCAGCACGTGGTAAAGCTGACCTGAACTCATACCGGAATGCCAGTTCAGAGGTGGTTTCCATTTTATCAAGGAAGGGTCGATGTGAGAGGGCTTCAATTGACGAAGTGTATCTTGACCATACTGATGCAGCAGAAACCATGTTAGCTGAAGCTCCTCCAGAAAGCTTGGAAGCAATTGAGGAGGAAGCTCTCAAGTCACATGTTTTGGGACTCGATAATGAGATCCATCAGTTTGCAGAACACAACAACATAATAGTTAGTCTAGATACCATAGATCATTCCTCCAGTACCTGGTTATGGAATATTGCAAGGGGGATAAGTGGGGAAGAAGTTGAGGGGCGCCTTCTTCCGAAGAGCCATGGTTCTGGGAAGACGTTTCCTGGACCTCAGGCTTTGAAGACGATTTCTTCTGTTCAACACTGGCTTAATGAACTTTGTGAAGATTTGAGTGAACGTCTTCAATTGGACTTGGATGAAAATAAACGTATCGCTCATACACTAGTGCTGCATGCCAACGCATACAAGGCCAGTGATTCAGATTCACAGAAGAAGTTCCCTTCTAAATCTTGTCCCCTTAGGTATGGGGCTGCCAAGATACAAGAAGATGCTCTTAATCTCTTTCAAGCTGTATTACGTGAATACTTGGGTTTATTCACAGGCAAAATCCAAGGAAGTCAAAATAACCAATGGGGAATAACATCCCTCTCTGTTTCAGCAAGTAAAATTGTTCCTATACCATCGGATCTTGCATATTATCTGCTTAAAGAAGATGAATTAGATGATTCCCCTTGCATCTTTAGGTCTATTGAGAAGCAGAGATGGTCATATGCATGTGCAAAGCAATTGATCGAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

339

Amino Acids

37.87

Weight (kDa)

5.6

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMS	PF00817	45 - 154	3.7e-07	impB/mucB/samB family
IMS_C	PF11799	171 - 298	6.7e-10	impB/mucB/samB family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	501
AccB7I	CCANNNNNTGG	1 cut(s)	453
AclWI	GGATC	2 cut(s)	379, 912
AcuI	CTGAAG	1 cut(s)	330
AcvI	CACGTG	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	502
AfaI	GTAC	1 cut(s)	451
AfiI	CCNNNNNNNGG	2 cut(s)	453, 459
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	5 cut(s)	258, 559, 578, 623, 785
AhlI	ACTAGT	1 cut(s)	661
AjnI	CCWGG	2 cut(s)	452, 541
AloI	GAACNNNNNNTCC	2 cut(s)	190, 222
AluBI	AGCT	8 cut(s)	56, 148, 179, 308, 314, 327, 350, 788
AluI	AGCT	8 cut(s)	56, 148, 179, 308, 314, 327, 350, 788
AlwI	GGATC	2 cut(s)	379, 912
AlwNI	CAGNNNCTG	1 cut(s)	453
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	2 cut(s)	70, 687
ApeKI	GCWGC	5 cut(s)	132, 164, 290, 667, 749
Asp700I	GAANNNNTTC	2 cut(s)	618, 713
AspLEI	GCGC	1 cut(s)	504
AspS9I	GGNCC	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	545
AxyI	CCTNAGG	2 cut(s)	549, 737
BanI	GGYRCC	1 cut(s)	501
BbrPI	CACGTG	1 cut(s)	170
BbsI	GAAGAC	3 cut(s)	539, 566, 611
BbvI	GCAGC	5 cut(s)	119, 176, 302, 654, 736
BccI	CCATC	3 cut(s)	396, 907, 975
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BciT130I	CCWGG	2 cut(s)	454, 543
BcuI	ACTAGT	1 cut(s)	661
BfaI	CTAG	2 cut(s)	425, 662
BfoI	RGCGCY	1 cut(s)	505
BisI	GCNGC	5 cut(s)	133, 165, 291, 668, 750
BlsI	GCNGC	5 cut(s)	134, 166, 292, 669, 751
Bme1390I	CCNGG	2 cut(s)	454, 543
Bme18I	GGWCC	1 cut(s)	545
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	1 cut(s)	503
BmrFI	CCNGG	2 cut(s)	454, 543
BmrI	ACTGGG	1 cut(s)	94
BmsI	GCATC	3 cut(s)	277, 757, 963
BmuI	ACTGGG	1 cut(s)	94
BpiI	GAAGAC	3 cut(s)	539, 566, 611
BpmI	CTGGAG	2 cut(s)	303, 430
BpuEI	CTTGAG	1 cut(s)	338
BsaAI	YACGTR	2 cut(s)	170, 797
BsaHI	GRCGYC	1 cut(s)	502
BsaJI	CCNNGG	2 cut(s)	520, 829
BsaWI	WCCGGW	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	2 cut(s)	453, 459
Bse1I	ACTGG	5 cut(s)	89, 204, 447, 587, 690
Bse21I	CCTNAGG	2 cut(s)	549, 737
BseBI	CCWGG	2 cut(s)	454, 543
BseDI	CCNNGG	2 cut(s)	520, 829
BseGI	GGATG	2 cut(s)	640, 860
BseLI	CCNNNNNNNGG	2 cut(s)	453, 459
BseMII	CTCAG	1 cut(s)	563
BseNI	ACTGG	5 cut(s)	89, 204, 447, 587, 690
BseRI	GAGGAG	2 cut(s)	306, 356
BseXI	GCAGC	5 cut(s)	119, 176, 302, 654, 736
BseYI	CCCAGC	1 cut(s)	160
BshFI	GGCC	2 cut(s)	72, 689
BshNI	GGYRCC	1 cut(s)	501
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	3 cut(s)	101, 384, 717
BslI	CCNNNNNNNGG	2 cut(s)	453, 459
BsmFI	GGGAC	3 cut(s)	101, 384, 717
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	72, 689
BsoBI	CYCGRG	1 cut(s)	109
Bsp143I	GATC	5 cut(s)	23, 384, 436, 904, 1008
Bsp19I	CCATGG	1 cut(s)	520
BspANI	GGCC	2 cut(s)	72, 689
BspCNI	CTCAG	1 cut(s)	562
BspLI	GGNNCC	1 cut(s)	503
BspPI	GGATC	2 cut(s)	379, 912
BspQI	GCTCTTC	1 cut(s)	509
BspT107I	GGYRCC	1 cut(s)	501
BsrI	ACTGG	5 cut(s)	89, 204, 447, 587, 690
BssECI	CCNNGG	2 cut(s)	520, 829
BssMI	GATC	5 cut(s)	23, 384, 436, 904, 1008
BssNI	GRCGYC	1 cut(s)	502
BssT1I	CCWWGG	2 cut(s)	520, 829
Bst2UI	CCWGG	2 cut(s)	454, 543
Bst6I	CTCTTC	1 cut(s)	509
BstACI	GRCGYC	1 cut(s)	502
BstBAI	YACGTR	2 cut(s)	170, 797
BstC8I	GCNNGC	2 cut(s)	74, 672
BstDEI	CTNAG	2 cut(s)	549, 737
BstDSI	CCRYGG	1 cut(s)	520
BstF5I	GGATG	2 cut(s)	640, 860
BstH2I	RGCGCY	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	5 cut(s)	26, 387, 439, 907, 1011
BstMBI	GATC	5 cut(s)	23, 384, 436, 904, 1008
BstMWI	GCNNNNNNNGC	1 cut(s)	686
BstNI	CCWGG	2 cut(s)	454, 543
BstNSI	RCATGY	3 cut(s)	365, 674, 996
BstSCI	CCNGG	2 cut(s)	452, 541
BstV1I	GCAGC	5 cut(s)	119, 176, 302, 654, 736
BstV2I	GAAGAC	3 cut(s)	539, 566, 611
BstX2I	RGATCY	2 cut(s)	384, 904
BstXI	CCANNNNNNTGG	1 cut(s)	527
BstYI	RGATCY	2 cut(s)	384, 904
Bsu36I	CCTNAGG	2 cut(s)	549, 737
BsuRI	GGCC	2 cut(s)	72, 689
BtgI	CCRYGG	1 cut(s)	520
BtsCI	GGATG	2 cut(s)	640, 860
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	3 cut(s)	11, 580, 697
Cac8I	GCNNGC	2 cut(s)	74, 672
CaiI	CAGNNNCTG	1 cut(s)	453
CfoI	GCGC	1 cut(s)	504
Cfr13I	GGNCC	1 cut(s)	545
CsiI	ACCWGGT	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	450
CviAII	CATG	5 cut(s)	301, 362, 521, 671, 993
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	2 cut(s)	549, 737
DinI	GGCGCC	1 cut(s)	503
DpnI	GATC	5 cut(s)	25, 386, 438, 906, 1010
DpnII	GATC	5 cut(s)	23, 384, 436, 904, 1008
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
Eco130I	CCWWGG	2 cut(s)	520, 829
Eco147I	AGGCCT	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	545
Eco57I	CTGAAG	1 cut(s)	330
Eco72I	CACGTG	1 cut(s)	170
Eco81I	CCTNAGG	2 cut(s)	549, 737
Eco88I	CYCGRG	1 cut(s)	109
EcoRII	CCWGG	2 cut(s)	452, 541
EcoT14I	CCWWGG	2 cut(s)	520, 829
EcoT22I	ATGCAT	1 cut(s)	994
EgeI	GGCGCC	1 cut(s)	503
EheI	GGCGCC	1 cut(s)	503
ErhI	CCWWGG	2 cut(s)	520, 829
FaeI	CATG	5 cut(s)	304, 365, 524, 674, 996
FalI	AAGNNNNNCTT	4 cut(s)	258, 290, 756, 788
FaqI	GGGAC	3 cut(s)	101, 384, 717
FatI	CATG	5 cut(s)	300, 361, 520, 670, 992
FauNDI	CATATG	1 cut(s)	988
Fnu4HI	GCNGC	5 cut(s)	133, 165, 291, 668, 750
FokI	GGATG	2 cut(s)	647, 847
Fsp4HI	GCNGC	5 cut(s)	133, 165, 291, 668, 750
FspBI	CTAG	2 cut(s)	425, 662
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	5 cut(s)	133, 165, 291, 668, 750
GsaI	CCCAGC	1 cut(s)	164
GsuI	CTGGAG	2 cut(s)	303, 430
HaeII	RGCGCY	1 cut(s)	505
HaeIII	GGCC	2 cut(s)	72, 689
HapII	CCGG	1 cut(s)	196
HhaI	GCGC	1 cut(s)	504
Hin1I	GRCGYC	1 cut(s)	502
Hin1II	CATG	5 cut(s)	304, 365, 524, 674, 996
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	325
HinfI	GANTC	5 cut(s)	112, 372, 695, 701, 944
HpaII	CCGG	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	614
Hpy188I	TCNGA	4 cut(s)	211, 513, 700, 904
Hpy188III	TCNNGA	3 cut(s)	275, 320, 425
Hpy8I	GTNNAC	1 cut(s)	614
HpyAV	CCTTC	4 cut(s)	229, 515, 729, 1007
HpyCH4IV	ACGT	5 cut(s)	169, 536, 616, 646, 796
HpyF10VI	GCNNNNNNNGC	1 cut(s)	686
HpyF3I	CTNAG	2 cut(s)	549, 737
HpySE526I	ACGT	5 cut(s)	169, 536, 616, 646, 796
Hsp92I	GRCGYC	1 cut(s)	502
Hsp92II	CATG	5 cut(s)	304, 365, 524, 674, 996
HspAI	GCGC	1 cut(s)	502
KasI	GGCGCC	1 cut(s)	501
Kzo9I	GATC	5 cut(s)	23, 384, 436, 904, 1008
LguI	GCTCTTC	1 cut(s)	509
LmnI	GCTCC	1 cut(s)	319
Lsp1109I	GCAGC	5 cut(s)	119, 176, 302, 654, 736
LweI	GCATC	3 cut(s)	277, 757, 963
MabI	ACCWGGT	1 cut(s)	452
MaeI	CTAG	2 cut(s)	425, 662
MaeII	ACGT	5 cut(s)	169, 536, 616, 646, 796
MaeIII	GTNAC	1 cut(s)	357
MalI	GATC	5 cut(s)	25, 386, 438, 906, 1010
MboI	GATC	5 cut(s)	23, 384, 436, 904, 1008
MfeI	CAATTG	4 cut(s)	258, 336, 623, 1004
MflI	RGATCY	2 cut(s)	384, 904
MluCI	AATT	6 cut(s)	258, 336, 623, 885, 935, 1004
Mly113I	GGCGCC	1 cut(s)	502
MlyI	GAGTC	2 cut(s)	121, 366
MmeI	TCCRAC	1 cut(s)	178
Mph1103I	ATGCAT	1 cut(s)	994
MroXI	GAANNNNTTC	2 cut(s)	618, 713
MseI	TTAA	3 cut(s)	588, 774, 924
MslI	CAYNNNNRTG	2 cut(s)	285, 991
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	2 cut(s)	454, 543
MunI	CAATTG	4 cut(s)	258, 336, 623, 1004
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	2 cut(s)	454, 543
MwoI	GCNNNNNNNGC	1 cut(s)	686
NarI	GGCGCC	1 cut(s)	502
NcoI	CCATGG	1 cut(s)	520
NdeI	CATATG	1 cut(s)	988
NdeII	GATC	5 cut(s)	23, 384, 436, 904, 1008
NlaIII	CATG	5 cut(s)	304, 365, 524, 674, 996
NlaIV	GGNNCC	1 cut(s)	503
NmuCI	GTSAC	1 cut(s)	357
NsiI	ATGCAT	1 cut(s)	994
NspI	RCATGY	3 cut(s)	365, 674, 996
PaeI	GCATGC	1 cut(s)	674
PceI	AGGCCT	1 cut(s)	72
PciI	ACATGT	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	509
PctI	GAATGC	1 cut(s)	205
PdmI	GAANNNNTTC	2 cut(s)	618, 713
PfeI	GAWTC	3 cut(s)	695, 701, 944
PflMI	CCANNNNNTGG	1 cut(s)	453
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	5 cut(s)	134, 166, 292, 669, 751
PleI	GAGTC	2 cut(s)	120, 366
PluTI	GGCGCC	1 cut(s)	505
PmaCI	CACGTG	1 cut(s)	170
PmlI	CACGTG	1 cut(s)	170
PpsI	GAGTC	2 cut(s)	120, 366
Ppu21I	YACGTR	2 cut(s)	170, 797
PscI	ACATGT	1 cut(s)	361
Psp6I	CCWGG	2 cut(s)	452, 541
PspCI	CACGTG	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	160
PspGI	CCWGG	2 cut(s)	452, 541
PspN4I	GGNNCC	1 cut(s)	503
PspPI	GGNCC	1 cut(s)	545
PstNI	CAGNNNCTG	1 cut(s)	453
PsuI	RGATCY	2 cut(s)	384, 904
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
RseI	CAYNNNNRTG	2 cut(s)	285, 991
SapI	GCTCTTC	1 cut(s)	509
SaqAI	TTAA	3 cut(s)	588, 774, 924
SatI	GCNGC	5 cut(s)	133, 165, 291, 668, 750
Sau3AI	GATC	5 cut(s)	23, 384, 436, 904, 1008
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	2 cut(s)	121, 366
ScrFI	CCNGG	2 cut(s)	454, 543
SexAI	ACCWGGT	1 cut(s)	452
SfaNI	GCATC	3 cut(s)	277, 757, 963
SfoI	GGCGCC	1 cut(s)	503
SinI	GGWCC	1 cut(s)	545
SmiMI	CAYNNNNRTG	2 cut(s)	285, 991
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
SpeI	ACTAGT	1 cut(s)	661
SphI	GCATGC	1 cut(s)	674
Sse9I	AATT	6 cut(s)	258, 336, 623, 885, 935, 1004
SseBI	AGGCCT	1 cut(s)	72
SspDI	GGCGCC	1 cut(s)	501
SspI	AATATT	1 cut(s)	466
SspMI	CTAG	2 cut(s)	425, 662
StuI	AGGCCT	1 cut(s)	72
StyD4I	CCNGG	2 cut(s)	452, 541
StyI	CCWWGG	2 cut(s)	520, 829
TaiI	ACGT	5 cut(s)	172, 539, 619, 649, 799
TaqI	TCGA	4 cut(s)	22, 241, 375, 1011
TasI	AATT	6 cut(s)	258, 336, 623, 885, 935, 1004
TfiI	GAWTC	3 cut(s)	695, 701, 944
Tru1I	TTAA	3 cut(s)	588, 774, 924
Tru9I	TTAA	3 cut(s)	588, 774, 924
TscAI	CASTG	2 cut(s)	587, 697
TseFI	GTSAC	1 cut(s)	357
TseI	GCWGC	5 cut(s)	132, 164, 290, 667, 749
Tsp45I	GTSAC	1 cut(s)	357
TspDTI	ATGAA	3 cut(s)	606, 651, 948
TspRI	CASTG	2 cut(s)	587, 697
Van91I	CCANNNNNTGG	1 cut(s)	453
VpaK11BI	GGWCC	1 cut(s)	545
XbaI	TCTAGA	1 cut(s)	424
XceI	RCATGY	3 cut(s)	365, 674, 996
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XmnI	GAANNNNTTC	2 cut(s)	618, 713
XspI	CTAG	2 cut(s)	425, 662
Zsp2I	ATGCAT	1 cut(s)	994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.