Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Forward (+)

15635852 .. 15671069

Gene Structure 35218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG167300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGGAACAAAGGAAAAATCCGGAGTTAAGGGGCTTACCTACGGTTGTGGTACAGTATAACTCATGGCAAGGTGGGGGCTTGATTGCTGTCAGCTATGAGGCCCGGAAATATGGTGTGAAGCGTTCAATGCGAGGTGCTGAGTCAAAGCAAGTCTGCCCACAAATTCAGCTGGTCCAAGTCCCAGTAGCACGTGGTAAAGCTGACCTGAACTCATACCGGAATGCAGGTTCAGCGGTGGTTTCTATTCTATCAAGGAAGGGTCGATGTGAGAGGGCTTCAATTGACGAAGTGTATCTTGACCTTACCGATGCAGCAGAAACCATGTTAGCTGAAGCTCCTCCAGAAAGCTTGGAAGAAATTGAGGAGGAAGCTCTCAAGTCACATGTTTTGGGGCTCGATAATGAGGACGGAAGTGAAGCCAAAGAAAATGTGAGGAAATGGCTTTGCAAAAGCAATGCTGATCGTCGTGATAAGCTATTAGCTTGTGGGGCTCTCATTGTTGCAGAACTTAGGTTGCTAGTGTTGAAGGAGACAGAATTTACTTGTTCAGCTGGCATTGCTCATAACAAGATGCTGGCCAAACTTGCAAGTGGTATGAATAAACCTGCACAACAGACTGTTGTGCCGTTATCATCTGTGAAAGGATTGCTAGAGTCCTTGCCAATTAAGAAAATGAAACAGCTTGGAGGAAAGCTGGGGAGTTCCTTACAAACTGACCTGGGTGTTAACACTGTCGGAGATTTATTGCAGTTTTCAGAGGAAAAGCTACAGCAACGCTACGGAATTAATACTGGTACCTGGTTATGGAACATTGCAAGGGGGATAAGTGGGGAAGAAGTTGAGGGGCGCCTTCTTCCGAAAAGCCATGGTTCTGGGAAGACATTTCCTGGACCTCAGGCTTTGAAGACGATTTCTTCTGTTCAACACTGGCTTAATGAACTTTGTGAAGATTTGAGTGAACGTCTTCACTTGGACTTGGAAGAAAACAAACGTATCGCTCATACACTAGTGCTGCATGGCAACGCATACAAGGCCAGTGATTCAGATTCACAGAAGAAGTTCCCTTCTAAATCTTGTCCCCTTAGGTATGGGGCTGCCAAGATACAAGAAGATGCTCTTAATCTCTTTCAAGCTGCATTACGTGAATACTTGGGTTTATTCACAGCCAAAATCCAAGGAAGTCAAAATAACCAATGGGGAATAACATCCCTCTCTGTTTCAGCAAGTAAAATTGTTCCTATACCATCGGGAACAGCTTCAATTATGAAATACTTTCATGGTCATCAGCCATCCTCTTCGACAAAGCAATCACAGGATAATTTCATTGAAGAATCTGCGCCTCCACCACCTTCAGGTAATGAGAACTACTTGGAGCTGAATGTAGATAAGCCACAGATTGAGTTACCTTGTGAAGAAACTACGATCAAGTATGCTGTGCCTAGTTTGCATCAACTGGAAGACAAAAACAATTTGTTGAATGACCAGAATCCGTGTTCTTCTTTAAAAAATCAAGCACAAGATGAATTCATGCGAGAAAGTTTACCCTTGCCAACCTCAGGGAGTGAACACTTCTCAGGAGTGAATGAAAGTCAGCTAATGAAAAATTCTTGTGGTGAAGACCCTTCTGTTAAATTGGCCATGCCTGGTTTCAGAAGATTGGAGCAGAAAAGGAAAACAGTGAAAAACAAGGGAACCTCTTCAATATTGAGATTTTTTAAGAACCAAGATCCATCTTCTGCTCCAAAAAAGCTAGAACATGTAGAAAATACTGAAGATGCTAAAACGCTGCTATCTGTTGGCCCTCAGTCTAGAAGTGATAGTTCTTTGGATCATAATCAATCAGAGTTGCCAAAAGCAGGGCCTTTCGAAGAACCTGGGACTTCTAGTGCACCTAGTTCATCTCAATATGAACAAAGAAGGGGAGTATGGAGTTTCAATACTGACGAGATTGACCCCTCTGTCATTGATGAGTTACCACCAGAAATTCAACAAGAAGTTCGTGCCTGGCTCAGGCCTCACAAGCGGCAAAATGTAGCGAAACGGGGTTCTAGTATTGCCGATTATTTCTTACCCACAAGTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

694

Amino Acids

76.58

Weight (kDa)

6.58

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMS	PF00817	2 - 197	2.8e-34	impB/mucB/samB family
POLH-Rev1_HhH	PF21704	220 - 275	5.1e-24	DNApol eta/Rev1, HhH motif
IMS_HHH_1	PF21999	231 - 275	4.6e-06	DNA polymerase-iota, thumb domain
IMS_C	PF11799	286 - 413	1.1e-08	impB/mucB/samB family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1958
Acc36I	ACCTGC	2 cut(s)	215, 613
Acc65I	GGTACC	1 cut(s)	794
AccB1I	GGYRCC	2 cut(s)	794, 846
AccIII	TCCGGA	1 cut(s)	19
AciI	CCGC	2 cut(s)	233, 2023
AclWI	GGATC	2 cut(s)	1721, 1836
AcoI	YGGCCR	2 cut(s)	576, 1635
AcsI	RAATTY	5 cut(s)	162, 536, 1523, 1603, 1983
AcuI	CTGAAG	3 cut(s)	351, 1335, 1791
AcvI	CACGTG	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	847
AfaI	GTAC	2 cut(s)	51, 796
AfiI	CCNNNNNNNGG	5 cut(s)	804, 1352, 1556, 1856, 2010
AflIII	ACRYGT	2 cut(s)	382, 1756
AhlI	ACTAGT	1 cut(s)	1006
AjnI	CCWGG	6 cut(s)	717, 797, 886, 1642, 1873, 2003
AloI	GAACNNNNNNTCC	2 cut(s)	211, 243
Alw21I	GWGCWC	1 cut(s)	1891
Alw26I	GTCTC	1 cut(s)	524
Alw44I	GTGCAC	1 cut(s)	1887
AlwI	GGATC	2 cut(s)	1721, 1836
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	7 cut(s)	99, 576, 1032, 1635, 1798, 1859, 2012
ApaLI	GTGCAC	1 cut(s)	1887
ApeKI	GCWGC	5 cut(s)	311, 1012, 1094, 1133, 1786
ApoI	RAATTY	5 cut(s)	162, 536, 1523, 1603, 1983
AseI	ATTAAT	1 cut(s)	786
Asp700I	GAANNNNTTC	4 cut(s)	963, 1058, 1255, 1696
Asp718I	GGTACC	1 cut(s)	794
AspLEI	GCGC	2 cut(s)	849, 1339
AspS9I	GGNCC	5 cut(s)	100, 172, 890, 1799, 1859
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	1625
AsuII	TTCGAA	1 cut(s)	1866
AvaII	GGWCC	2 cut(s)	172, 890
AxyI	CCTNAGG	3 cut(s)	894, 1082, 1555
BaeGI	GKGCMC	1 cut(s)	1891
BaeI	ACNNNNGTAYC	2 cut(s)	976, 1009
BalI	TGGCCA	2 cut(s)	578, 1637
BanI	GGYRCC	2 cut(s)	794, 846
BanII	GRGCYC	2 cut(s)	396, 493
BbrPI	CACGTG	1 cut(s)	191
BbsI	GAAGAC	5 cut(s)	884, 911, 956, 1464, 1623
Bbv12I	GWGCWC	1 cut(s)	1891
BbvI	GCAGC	5 cut(s)	323, 999, 1081, 1120, 1773
BccI	CCATC	3 cut(s)	1252, 1297, 1738
BceAI	ACGGC	1 cut(s)	610
BciT130I	CCWGG	6 cut(s)	719, 799, 888, 1644, 1875, 2005
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	524
BcuI	ACTAGT	1 cut(s)	1006
BfaI	CTAG	9 cut(s)	518, 650, 1007, 1440, 1751, 1809, 1884, 1893, 2049
BfmI	CTRYAG	1 cut(s)	767
BfoI	RGCGCY	1 cut(s)	850
BfuAI	ACCTGC	2 cut(s)	215, 613
BisI	GCNGC	6 cut(s)	312, 1013, 1095, 1134, 1787, 2024
BlsI	GCNGC	6 cut(s)	313, 1014, 1096, 1135, 1788, 2025
Bme1390I	CCNGG	7 cut(s)	103, 719, 799, 888, 1644, 1875, 2005
Bme18I	GGWCC	2 cut(s)	172, 890
BmgT120I	GGNCC	5 cut(s)	100, 172, 890, 1799, 1859
BmiI	GGNNCC	3 cut(s)	796, 848, 1693
BmrFI	CCNGG	7 cut(s)	103, 719, 799, 888, 1644, 1875, 2005
BmrI	ACTGGG	1 cut(s)	176
BmsI	GCATC	5 cut(s)	298, 561, 1102, 1456, 1765
BmuI	ACTGGG	1 cut(s)	176
BpiI	GAAGAC	5 cut(s)	884, 911, 956, 1464, 1623
BpmI	CTGGAG	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	2009
Bpu14I	TTCGAA	1 cut(s)	1866
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	103
BsaAI	YACGTR	2 cut(s)	191, 1142
BsaBI	GATNNNNATC	1 cut(s)	1833
BsaHI	GRCGYC	1 cut(s)	847
BsaJI	CCNNGG	4 cut(s)	718, 865, 1174, 1874
BsaWI	WCCGGW	2 cut(s)	19, 216
Bsc4I	CCNNNNNNNGG	5 cut(s)	804, 1352, 1556, 1856, 2010
Bse1I	ACTGG	5 cut(s)	182, 796, 932, 1035, 1458
Bse21I	CCTNAGG	3 cut(s)	894, 1082, 1555
Bse3DI	GCAATG	3 cut(s)	460, 555, 810
Bse8I	GATNNNNATC	1 cut(s)	1833
BseAI	TCCGGA	1 cut(s)	19
BseBI	CCWGG	6 cut(s)	719, 799, 888, 1644, 1875, 2005
BseDI	CCNNGG	4 cut(s)	718, 865, 1174, 1874
BseGI	GGATG	2 cut(s)	1205, 1289
BseJI	GATNNNNATC	1 cut(s)	1833
BseLI	CCNNNNNNNGG	5 cut(s)	804, 1352, 1556, 1856, 2010
BseMI	GCAATG	3 cut(s)	460, 555, 810
BseMII	CTCAG	6 cut(s)	129, 908, 1569, 1587, 1817, 2023
BseNI	ACTGG	5 cut(s)	182, 796, 932, 1035, 1458
BseRI	GAGGAG	2 cut(s)	327, 377
BseSI	GKGCMC	1 cut(s)	1891
BseXI	GCAGC	5 cut(s)	323, 999, 1081, 1120, 1773
BseYI	CCCAGC	1 cut(s)	694
BsgI	GTGCAG	1 cut(s)	591
BshFI	GGCC	7 cut(s)	101, 578, 1034, 1637, 1800, 1861, 2014
BshNI	GGYRCC	2 cut(s)	794, 846
BsiHKAI	GWGCWC	1 cut(s)	1891
BsiSI	CCGG	3 cut(s)	20, 103, 217
BslFI	GGGAC	3 cut(s)	164, 1062, 1891
BslI	CCNNNNNNNGG	5 cut(s)	804, 1352, 1556, 1856, 2010
BsmAI	GTCTC	1 cut(s)	524
BsmFI	GGGAC	3 cut(s)	164, 1062, 1891
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	7 cut(s)	101, 578, 1034, 1637, 1800, 1861, 2014
Bsp119I	TTCGAA	1 cut(s)	1866
Bsp1286I	GDGCHC	3 cut(s)	396, 493, 1891
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	4 cut(s)	460, 1422, 1726, 1828
Bsp19I	CCATGG	1 cut(s)	865
BspACI	CCGC	2 cut(s)	233, 2023
BspANI	GGCC	7 cut(s)	101, 578, 1034, 1637, 1800, 1861, 2014
BspCNI	CTCAG	6 cut(s)	130, 907, 1568, 1586, 1816, 2022
BspEI	TCCGGA	1 cut(s)	19
BspLI	GGNNCC	3 cut(s)	796, 848, 1693
BspMI	ACCTGC	2 cut(s)	215, 613
BspPI	GGATC	2 cut(s)	1721, 1836
BspT104I	TTCGAA	1 cut(s)	1866
BspT107I	GGYRCC	2 cut(s)	794, 846
BsrDI	GCAATG	3 cut(s)	460, 555, 810
BsrI	ACTGG	5 cut(s)	182, 796, 932, 1035, 1458
BssECI	CCNNGG	4 cut(s)	718, 865, 1174, 1874
BssMI	GATC	4 cut(s)	460, 1422, 1726, 1828
BssNI	GRCGYC	1 cut(s)	847
BssT1I	CCWWGG	2 cut(s)	865, 1174
Bst2UI	CCWGG	6 cut(s)	719, 799, 888, 1644, 1875, 2005
Bst4CI	ACNGT	5 cut(s)	43, 54, 619, 733, 1678
Bst6I	CTCTTC	2 cut(s)	1300, 1702
BstACI	GRCGYC	1 cut(s)	847
BstBAI	YACGTR	2 cut(s)	191, 1142
BstBI	TTCGAA	1 cut(s)	1866
BstC8I	GCNNGC	2 cut(s)	553, 576
BstDEI	CTNAG	8 cut(s)	138, 509, 894, 1082, 1555, 1573, 1803, 2009
BstDSI	CCRYGG	1 cut(s)	865
BstENI	CCTNNNNNAGG	1 cut(s)	2008
BstF5I	GGATG	2 cut(s)	1205, 1289
BstH2I	RGCGCY	1 cut(s)	850
BstHHI	GCGC	2 cut(s)	849, 1339
BstKTI	GATC	4 cut(s)	463, 1425, 1729, 1831
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	4 cut(s)	460, 1422, 1726, 1828
BstMWI	GCNNNNNNNGC	8 cut(s)	127, 230, 488, 557, 584, 1031, 1444, 2020
BstNI	CCWGG	6 cut(s)	719, 799, 888, 1644, 1875, 2005
BstNSI	RCATGY	2 cut(s)	386, 1760
BstSCI	CCNGG	7 cut(s)	101, 717, 797, 886, 1642, 1873, 2003
BstSFI	CTRYAG	1 cut(s)	767
BstSLI	GKGCMC	1 cut(s)	1891
BstV1I	GCAGC	5 cut(s)	323, 999, 1081, 1120, 1773
BstV2I	GAAGAC	5 cut(s)	884, 911, 956, 1464, 1623
BstX2I	RGATCY	1 cut(s)	1726
BstXI	CCANNNNNNTGG	1 cut(s)	872
BstYI	RGATCY	1 cut(s)	1726
Bsu36I	CCTNAGG	3 cut(s)	894, 1082, 1555
BsuRI	GGCC	7 cut(s)	101, 578, 1034, 1637, 1800, 1861, 2014
BtgI	CCRYGG	1 cut(s)	865
BtsCI	GGATG	2 cut(s)	1205, 1289
BtsIMutI	CAGTG	4 cut(s)	729, 925, 1042, 1683
BveI	ACCTGC	2 cut(s)	215, 613
Cac8I	GCNNGC	2 cut(s)	553, 576
CfoI	GCGC	2 cut(s)	849, 1339
Cfr13I	GGNCC	5 cut(s)	100, 172, 890, 1799, 1859
CsiI	ACCWGGT	1 cut(s)	797
Csp6I	GTAC	2 cut(s)	50, 795
CviAII	CATG	9 cut(s)	63, 322, 383, 866, 1016, 1277, 1528, 1639, 1757
CviQI	GTAC	2 cut(s)	50, 795
DdeI	CTNAG	8 cut(s)	138, 509, 894, 1082, 1555, 1573, 1803, 2009
DinI	GGCGCC	1 cut(s)	848
DpnI	GATC	4 cut(s)	462, 1424, 1728, 1830
DpnII	GATC	4 cut(s)	460, 1422, 1726, 1828
DraI	TTTAAA	1 cut(s)	1503
DrdI	GACNNNNNNGTC	1 cut(s)	1958
DseDI	GACNNNNNNGTC	1 cut(s)	1958
EaeI	YGGCCR	2 cut(s)	576, 1635
Eam1104I	CTCTTC	2 cut(s)	1300, 1702
EarI	CTCTTC	2 cut(s)	1300, 1702
Eco130I	CCWWGG	2 cut(s)	865, 1174
Eco147I	AGGCCT	1 cut(s)	2014
Eco24I	GRGCYC	2 cut(s)	396, 493
Eco47I	GGWCC	2 cut(s)	172, 890
Eco57I	CTGAAG	3 cut(s)	351, 1335, 1791
Eco72I	CACGTG	1 cut(s)	191
Eco81I	CCTNAGG	3 cut(s)	894, 1082, 1555
EcoNI	CCTNNNNNAGG	1 cut(s)	2008
EcoO109I	RGGNCCY	1 cut(s)	1859
EcoRI	GAATTC	1 cut(s)	1523
EcoRII	CCWGG	6 cut(s)	717, 797, 886, 1642, 1873, 2003
EcoT14I	CCWWGG	2 cut(s)	865, 1174
EcoT38I	GRGCYC	2 cut(s)	396, 493
EgeI	GGCGCC	1 cut(s)	848
EheI	GGCGCC	1 cut(s)	848
ErhI	CCWWGG	2 cut(s)	865, 1174
FaeI	CATG	9 cut(s)	66, 325, 386, 869, 1019, 1280, 1531, 1642, 1760
FalI	AAGNNNNNCTT	4 cut(s)	279, 311, 1101, 1133
FaqI	GGGAC	3 cut(s)	164, 1062, 1891
FatI	CATG	9 cut(s)	62, 321, 382, 865, 1015, 1276, 1527, 1638, 1756
Fnu4HI	GCNGC	6 cut(s)	312, 1013, 1095, 1134, 1787, 2024
FokI	GGATG	2 cut(s)	1192, 1276
FriOI	GRGCYC	2 cut(s)	396, 493
Fsp4HI	GCNGC	6 cut(s)	312, 1013, 1095, 1134, 1787, 2024
FspBI	CTAG	9 cut(s)	518, 650, 1007, 1440, 1751, 1809, 1884, 1893, 2049
GlaI	GCGC	2 cut(s)	848, 1338
GluI	GCNGC	6 cut(s)	312, 1013, 1095, 1134, 1787, 2024
GsaI	CCCAGC	1 cut(s)	698
GsuI	CTGGAG	1 cut(s)	324
HaeII	RGCGCY	1 cut(s)	850
HaeIII	GGCC	7 cut(s)	101, 578, 1034, 1637, 1800, 1861, 2014
HapII	CCGG	3 cut(s)	20, 103, 217
HhaI	GCGC	2 cut(s)	849, 1339
Hin1I	GRCGYC	1 cut(s)	847
Hin1II	CATG	9 cut(s)	66, 325, 386, 869, 1019, 1280, 1531, 1642, 1760
Hin6I	GCGC	2 cut(s)	847, 1337
HinP1I	GCGC	2 cut(s)	847, 1337
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	6 cut(s)	140, 653, 1040, 1046, 1331, 1486
HpaI	GTTAAC	1 cut(s)	727
HpaII	CCGG	3 cut(s)	20, 103, 217
HphI	GGTGA	1 cut(s)	1625
Hpy166II	GTNNAC	5 cut(s)	727, 959, 1541, 1565, 1889
Hpy188I	TCNGA	6 cut(s)	737, 757, 858, 1045, 1652, 1843
Hpy188III	TCNNGA	7 cut(s)	20, 296, 341, 467, 1248, 1575, 1809
Hpy8I	GTNNAC	5 cut(s)	727, 959, 1541, 1565, 1889
Hpy99I	CGWCG	1 cut(s)	468
HpyAV	CCTTC	7 cut(s)	250, 520, 860, 1074, 1359, 1632, 1911
HpyCH4III	ACNGT	5 cut(s)	43, 54, 619, 733, 1678
HpyCH4IV	ACGT	4 cut(s)	190, 961, 991, 1141
HpyF10VI	GCNNNNNNNGC	8 cut(s)	127, 230, 488, 557, 584, 1031, 1444, 2020
HpyF3I	CTNAG	8 cut(s)	138, 509, 894, 1082, 1555, 1573, 1803, 2009
HpySE526I	ACGT	4 cut(s)	190, 961, 991, 1141
Hsp92I	GRCGYC	1 cut(s)	847
Hsp92II	CATG	9 cut(s)	66, 325, 386, 869, 1019, 1280, 1531, 1642, 1760
HspAI	GCGC	2 cut(s)	847, 1337
KasI	GGCGCC	1 cut(s)	846
Kpn2I	TCCGGA	1 cut(s)	19
KpnI	GGTACC	1 cut(s)	798
KspAI	GTTAAC	1 cut(s)	727
Kzo9I	GATC	4 cut(s)	460, 1422, 1726, 1828
LmnI	GCTCC	4 cut(s)	340, 1372, 1660, 1744
Lsp1109I	GCAGC	5 cut(s)	323, 999, 1081, 1120, 1773
LweI	GCATC	5 cut(s)	298, 561, 1102, 1456, 1765
MabI	ACCWGGT	1 cut(s)	797
MaeI	CTAG	9 cut(s)	518, 650, 1007, 1440, 1751, 1809, 1884, 1893, 2049
MaeII	ACGT	4 cut(s)	190, 961, 991, 1141
MaeIII	GTNAC	3 cut(s)	378, 1401, 1971
MalI	GATC	4 cut(s)	462, 1424, 1728, 1830
MboI	GATC	4 cut(s)	460, 1422, 1726, 1828
MfeI	CAATTG	1 cut(s)	279
MflI	RGATCY	1 cut(s)	1726
MhlI	GDGCHC	3 cut(s)	396, 493, 1891
MlsI	TGGCCA	2 cut(s)	578, 1637
MluNI	TGGCCA	2 cut(s)	578, 1637
Mly113I	GGCGCC	1 cut(s)	847
MlyI	GAGTC	2 cut(s)	149, 662
MmeI	TCCRAC	1 cut(s)	715
Mox20I	TGGCCA	2 cut(s)	578, 1637
MroI	TCCGGA	1 cut(s)	19
MroXI	GAANNNNTTC	4 cut(s)	963, 1058, 1255, 1696
MscI	TGGCCA	2 cut(s)	578, 1637
MseI	TTAA	9 cut(s)	26, 666, 726, 786, 933, 1119, 1502, 1629, 1716
Msp20I	TGGCCA	2 cut(s)	578, 1637
MspA1I	CMGCKG	3 cut(s)	169, 233, 551
MspI	CCGG	3 cut(s)	20, 103, 217
MspR9I	CCNGG	7 cut(s)	103, 719, 799, 888, 1644, 1875, 2005
MunI	CAATTG	1 cut(s)	279
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	6 cut(s)	719, 799, 888, 1644, 1875, 2005
MwoI	GCNNNNNNNGC	8 cut(s)	127, 230, 488, 557, 584, 1031, 1444, 2020
NarI	GGCGCC	1 cut(s)	847
NciI	CCSGG	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	865
NdeII	GATC	4 cut(s)	460, 1422, 1726, 1828
NlaIII	CATG	9 cut(s)	66, 325, 386, 869, 1019, 1280, 1531, 1642, 1760
NlaIV	GGNNCC	3 cut(s)	796, 848, 1693
NmuCI	GTSAC	1 cut(s)	378
NspI	RCATGY	2 cut(s)	386, 1760
NspV	TTCGAA	1 cut(s)	1866
PceI	AGGCCT	1 cut(s)	2014
PciI	ACATGT	2 cut(s)	382, 1756
PctI	GAATGC	1 cut(s)	226
PdmI	GAANNNNTTC	4 cut(s)	963, 1058, 1255, 1696
PfeI	GAWTC	4 cut(s)	1040, 1046, 1331, 1486
PfoI	TCCNGGA	1 cut(s)	886
PkrI	GCNGC	6 cut(s)	313, 1014, 1096, 1135, 1788, 2025
PleI	GAGTC	2 cut(s)	148, 661
PluTI	GGCGCC	1 cut(s)	850
PmaCI	CACGTG	1 cut(s)	191
PmlI	CACGTG	1 cut(s)	191
PpsI	GAGTC	2 cut(s)	148, 661
Ppu21I	YACGTR	2 cut(s)	191, 1142
PscI	ACATGT	2 cut(s)	382, 1756
PshBI	ATTAAT	1 cut(s)	786
Psp6I	CCWGG	6 cut(s)	717, 797, 886, 1642, 1873, 2003
PspCI	CACGTG	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	694
PspGI	CCWGG	6 cut(s)	717, 797, 886, 1642, 1873, 2003
PspN4I	GGNNCC	3 cut(s)	796, 848, 1693
PspPI	GGNCC	5 cut(s)	100, 172, 890, 1799, 1859
PsuI	RGATCY	1 cut(s)	1726
PvuII	CAGCTG	2 cut(s)	169, 551
RsaI	GTAC	2 cut(s)	51, 796
RsaNI	GTAC	2 cut(s)	50, 795
SaqAI	TTAA	9 cut(s)	26, 666, 726, 786, 933, 1119, 1502, 1629, 1716
SatI	GCNGC	6 cut(s)	312, 1013, 1095, 1134, 1787, 2024
Sau3AI	GATC	4 cut(s)	460, 1422, 1726, 1828
Sau96I	GGNCC	5 cut(s)	100, 172, 890, 1799, 1859
SchI	GAGTC	2 cut(s)	149, 662
ScrFI	CCNGG	7 cut(s)	103, 719, 799, 888, 1644, 1875, 2005
SduI	GDGCHC	3 cut(s)	396, 493, 1891
SexAI	ACCWGGT	1 cut(s)	797
SfaNI	GCATC	5 cut(s)	298, 561, 1102, 1456, 1765
SfcI	CTRYAG	1 cut(s)	767
SfoI	GGCGCC	1 cut(s)	848
SfuI	TTCGAA	1 cut(s)	1866
SinI	GGWCC	2 cut(s)	172, 890
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SpeI	ACTAGT	1 cut(s)	1006
SseBI	AGGCCT	1 cut(s)	2014
SsiI	CCGC	2 cut(s)	233, 2023
SspDI	GGCGCC	1 cut(s)	846
SspI	AATATT	1 cut(s)	1704
SspMI	CTAG	9 cut(s)	518, 650, 1007, 1440, 1751, 1809, 1884, 1893, 2049
StuI	AGGCCT	1 cut(s)	2014
StyD4I	CCNGG	7 cut(s)	101, 717, 797, 886, 1642, 1873, 2003
StyI	CCWWGG	2 cut(s)	865, 1174
TaaI	ACNGT	5 cut(s)	43, 54, 619, 733, 1678
TaiI	ACGT	4 cut(s)	193, 964, 994, 1144
TaqI	TCGA	4 cut(s)	262, 396, 1298, 1866
TauI	GCSGC	1 cut(s)	2026
TfiI	GAWTC	4 cut(s)	1040, 1046, 1331, 1486
Tru1I	TTAA	9 cut(s)	26, 666, 726, 786, 933, 1119, 1502, 1629, 1716
Tru9I	TTAA	9 cut(s)	26, 666, 726, 786, 933, 1119, 1502, 1629, 1716
TscAI	CASTG	4 cut(s)	736, 932, 1042, 1683
TseFI	GTSAC	1 cut(s)	378
TseI	GCWGC	5 cut(s)	311, 1012, 1094, 1133, 1786
Tsp45I	GTSAC	1 cut(s)	378
TspGWI	ACGGA	3 cut(s)	423, 795, 1479
TspRI	CASTG	4 cut(s)	736, 932, 1042, 1683
VneI	GTGCAC	1 cut(s)	1887
VpaK11BI	GGWCC	2 cut(s)	172, 890
VspI	ATTAAT	1 cut(s)	786
XagI	CCTNNNNNAGG	1 cut(s)	2008
XapI	RAATTY	5 cut(s)	162, 536, 1523, 1603, 1983
XbaI	TCTAGA	1 cut(s)	1808
XceI	RCATGY	2 cut(s)	386, 1760
XmnI	GAANNNNTTC	4 cut(s)	963, 1058, 1255, 1696
XspI	CTAG	9 cut(s)	518, 650, 1007, 1440, 1751, 1809, 1884, 1893, 2049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.