Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Forward (+)

5607344 .. 5607965

Gene Structure 622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0064800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCATCCCGTCTGCAAAACAAGATTTCTGTAGATGTTGCAGCTGATAAGAGTTCAAGCGATTCCTTTTCGTTTGCTGGTCTCCTGTGTGTTCAGGACCAGCAAGCGAAGTCACTTCAATGTAACAGAGCCAATCAAATTCACAAACAAGGTACAGAGTTTGAGTTTAGCACTATAGAAGAGTCCTTTGTGAGCGATCCAATCAAGCATTGCCCAGCTGATCTGTTAATCTCAAACGGTCAGATTGTACCACAACCAACACAGCATACTGTGACCAAGCAGCAACACAAGAAAGCTTCAGTACGAGCAACCAGTACAAGTAGCAAGAGATCAACTCAAAATACAAGTGGCACCCAAGCTTCTGCAAAACCATATCCAGAGCATAATGACCAAGACAAGAAGGAGCATGCTGTGCCAAGCTCATGGTTTGGCCGGAAAATATTCAAGTCATTTTTCTTCCCTTGCAAGGAAACCAAAGCTGTTAAGCCAACCCTGAGAGCAAATAGAATGCCAGAAGCAAATGGGAAGCTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

178

Amino Acids

19.76

Weight (kDa)

9.54

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	350
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	430
AcsI	RAATTY	1 cut(s)	138
AcuI	CTGAAG	1 cut(s)	282
AfaI	GTAC	4 cut(s)	154, 249, 303, 316
AfiI	CCNNNNNNNGG	1 cut(s)	466
AgsI	TTSAA	3 cut(s)	57, 119, 445
AluBI	AGCT	7 cut(s)	44, 218, 296, 359, 420, 479, 529
AluI	AGCT	7 cut(s)	44, 218, 296, 359, 420, 479, 529
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	191
AoxI	GGCC	1 cut(s)	430
ApeKI	GCWGC	2 cut(s)	41, 280
ApoI	RAATTY	1 cut(s)	138
Asp700I	GAANNNNTTC	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	350
BbvI	GCAGC	2 cut(s)	53, 292
BcoDI	GTCTC	1 cut(s)	86
BfmI	CTRYAG	2 cut(s)	30, 174
BisI	GCNGC	2 cut(s)	42, 281
BlsI	GCNGC	2 cut(s)	43, 282
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	352
BmsI	GCATC	1 cut(s)	14
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
BsaI	GGTCTC	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	208
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	53, 292
BseYI	CCCAGC	1 cut(s)	214
BshFI	GGCC	1 cut(s)	432
BshNI	GGYRCC	1 cut(s)	350
BsiSI	CCGG	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	1 cut(s)	432
Bso31I	GGTCTC	1 cut(s)	86
Bsp143I	GATC	3 cut(s)	196, 220, 329
BspANI	GGCC	1 cut(s)	432
BspCNI	CTCAG	1 cut(s)	486
BspLI	GGNNCC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	350
BspTNI	GGTCTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	312
BssMI	GATC	3 cut(s)	196, 220, 329
Bst4CI	ACNGT	2 cut(s)	239, 271
Bst6I	CTCTTC	1 cut(s)	174
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstC8I	GCNNGC	2 cut(s)	105, 408
BstDEI	CTNAG	1 cut(s)	494
BstF5I	GGATG	1 cut(s)	5
BstKTI	GATC	3 cut(s)	199, 223, 332
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	3 cut(s)	196, 220, 329
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstNSI	RCATGY	1 cut(s)	410
BstSFI	CTRYAG	2 cut(s)	30, 174
BstV1I	GCAGC	2 cut(s)	53, 292
BstXI	CCANNNNNNTGG	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	432
BtsCI	GGATG	1 cut(s)	5
Cac8I	GCNNGC	2 cut(s)	105, 408
Cfr13I	GGNCC	1 cut(s)	97
Csp6I	GTAC	4 cut(s)	153, 248, 302, 315
CviAII	CATG	2 cut(s)	407, 423
CviQI	GTAC	4 cut(s)	153, 248, 302, 315
DdeI	CTNAG	1 cut(s)	494
DpnI	GATC	3 cut(s)	198, 222, 331
DpnII	GATC	3 cut(s)	196, 220, 329
EaeI	YGGCCR	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	282
FaeI	CATG	2 cut(s)	410, 426
FaiI	YATR	6 cut(s)	176, 267, 373, 384, 408, 424
FatI	CATG	2 cut(s)	406, 422
Fnu4HI	GCNGC	2 cut(s)	42, 281
Fsp4HI	GCNGC	2 cut(s)	42, 281
GluI	GCNGC	2 cut(s)	42, 281
GsaI	CCCAGC	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	432
HapII	CCGG	1 cut(s)	433
Hin1II	CATG	2 cut(s)	410, 426
HindIII	AAGCTT	2 cut(s)	294, 357
HinfI	GANTC	2 cut(s)	62, 182
HpaII	CCGG	1 cut(s)	433
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	2 cut(s)	95, 377
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	2 cut(s)	239, 271
HpyCH4V	TGCA	4 cut(s)	16, 41, 365, 465
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	1 cut(s)	494
Hsp92II	CATG	2 cut(s)	410, 426
Kzo9I	GATC	3 cut(s)	196, 220, 329
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	2 cut(s)	53, 292
LweI	GCATC	1 cut(s)	14
MaeIII	GTNAC	3 cut(s)	111, 122, 271
MalI	GATC	3 cut(s)	198, 222, 331
MboI	GATC	3 cut(s)	196, 220, 329
MboII	GAAGA	2 cut(s)	191, 448
MluCI	AATT	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	440
MseI	TTAA	2 cut(s)	227, 483
MslI	CAYNNNNRTG	1 cut(s)	118
MspA1I	CMGCKG	2 cut(s)	44, 218
MspI	CCGG	1 cut(s)	433
Mva1269I	GAATGC	1 cut(s)	513
MwoI	GCNNNNNNNGC	1 cut(s)	412
NdeII	GATC	3 cut(s)	196, 220, 329
NlaIII	CATG	2 cut(s)	410, 426
NlaIV	GGNNCC	1 cut(s)	352
NmuCI	GTSAC	2 cut(s)	111, 271
NspI	RCATGY	1 cut(s)	410
PaeI	GCATGC	1 cut(s)	410
PctI	GAATGC	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	440
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	43, 282
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	97
PvuII	CAGCTG	2 cut(s)	44, 218
RsaI	GTAC	4 cut(s)	154, 249, 303, 316
RsaNI	GTAC	4 cut(s)	153, 248, 302, 315
RseI	CAYNNNNRTG	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	227, 483
SatI	GCNGC	2 cut(s)	42, 281
Sau3AI	GATC	3 cut(s)	196, 220, 329
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	191
SetI	ASST	8 cut(s)	46, 154, 220, 298, 361, 422, 481, 531
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	2 cut(s)	30, 174
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	118
SphI	GCATGC	1 cut(s)	410
Sse9I	AATT	1 cut(s)	138
SspI	AATATT	1 cut(s)	441
TaaI	ACNGT	2 cut(s)	239, 271
TasI	AATT	1 cut(s)	138
TatI	WGTACW	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	2 cut(s)	227, 483
Tru9I	TTAA	2 cut(s)	227, 483
TseFI	GTSAC	2 cut(s)	111, 271
TseI	GCWGC	2 cut(s)	41, 280
Tsp45I	GTSAC	2 cut(s)	111, 271
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	138
XceI	RCATGY	1 cut(s)	410
XmnI	GAANNNNTTC	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.