Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Reverse (-)

32391525 .. 32392614

Gene Structure 1090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1227100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAAGGATATCTATGCAGGAAGCGAGCACTGCTCACGAATTAATCAAAGTCGACAAATGAAAATTAATTATGGGGAAGAACCTTGTGTTAATGTGCCTAGTTCCAATAGACCGGAGCTGAAAAGAAAAACATTGAAAGACAAGGGAACATCTTCGATATTGAGATTCTTCAAGAATCAAGATCCATCTTGCGCTCCACAGAAGCTAGAACATGCTAAAAATATTGAAGATGGTAAAGCACCACCATCTGTTGGCTCCCAGTCTGGAAATGATAGCAGTTTGGATAGTAATCAATCTGAGCTGCCAAAAGAAAGACCTTTTGAAGAAGCTGGGGCTTCTAGCGTGTCCGGTTGGTCTCAAATTGAACAAAGAACGGGAGCATCGTGGAGTTACAATGTCGATGAGATTGACCCCTCTGTCATCGATGAGCTGCCACCAGAAATACAACAAGAAGTTCGTGCCTTGCTCCGGCCTCACAAGCGGCACAATGTAGTGAAACGGGGTCCTAGTATTGCTCATTACTTCTCACCAACCAAGAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

182

Amino Acids

20.2

Weight (kDa)

8.4

Isoelectric Point (pI)

78.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBM	PF14377	134 - 152	3.6e-06	Ubiquitin binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	416
AccB7I	CCANNNNNTGG	1 cut(s)	251
AccI	GTMKAC	1 cut(s)	52
AciI	CCGC	1 cut(s)	481
AclWI	GGATC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	251, 468
AgsI	TTSAA	5 cut(s)	136, 172, 227, 323, 365
AluBI	AGCT	5 cut(s)	118, 205, 301, 329, 430
AluI	AGCT	5 cut(s)	118, 205, 301, 329, 430
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	470
ApeKI	GCWGC	2 cut(s)	301, 430
AseI	ATTAAT	2 cut(s)	42, 66
Asp700I	GAANNNNTTC	1 cut(s)	151
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	519
AvaII	GGWCC	1 cut(s)	503
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	288, 417
BccI	CCATC	3 cut(s)	193, 224, 253
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	4 cut(s)	99, 206, 339, 507
BisI	GCNGC	3 cut(s)	302, 431, 482
BlsI	GCNGC	3 cut(s)	303, 432, 483
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	2 cut(s)	256, 504
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	1 cut(s)	389
BmuI	ACTGGG	1 cut(s)	253
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
Bsa29I	ATCGAT	1 cut(s)	423
BsaBI	GATNNNNATC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	360
BsaWI	WCCGGW	2 cut(s)	112, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 468
Bse1I	ACTGG	1 cut(s)	259
Bse8I	GATNNNNATC	1 cut(s)	288
BseCI	ATCGAT	1 cut(s)	423
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	2 cut(s)	251, 468
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	259
BseXI	GCAGC	2 cut(s)	288, 417
BseYI	CCCAGC	1 cut(s)	329
BshFI	GGCC	1 cut(s)	472
BshVI	ATCGAT	1 cut(s)	423
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	3 cut(s)	113, 348, 469
BslI	CCNNNNNNNGG	2 cut(s)	251, 468
BsmAI	GTCTC	1 cut(s)	360
BsnI	GGCC	1 cut(s)	472
Bso31I	GGTCTC	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	1 cut(s)	481
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	1 cut(s)	289
BspDI	ATCGAT	1 cut(s)	423
BspLI	GGNNCC	2 cut(s)	256, 504
BspPI	GGATC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	259
BssMI	GATC	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 478
BstNSI	RCATGY	1 cut(s)	215
BstV1I	GCAGC	2 cut(s)	288, 417
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
Bsu15I	ATCGAT	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	472
BsuTUI	ATCGAT	1 cut(s)	423
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	26
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	503
ClaI	ATCGAT	1 cut(s)	423
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	8 cut(s)	118, 205, 255, 301, 329, 335, 430, 472
CviKI_1	RGCY	8 cut(s)	118, 205, 255, 301, 329, 335, 430, 472
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
DrdI	GACNNNNNNGTC	1 cut(s)	416
DseDI	GACNNNNNNGTC	1 cut(s)	416
Eco31I	GGTCTC	1 cut(s)	360
Eco32I	GATATC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	503
EcoO109I	RGGNCCY	1 cut(s)	503
EcoRV	GATATC	1 cut(s)	10
FaeI	CATG	1 cut(s)	215
FaiI	YATR	4 cut(s)	15, 72, 213, 544
FatI	CATG	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	3 cut(s)	302, 431, 482
Fsp4HI	GCNGC	3 cut(s)	302, 431, 482
FspBI	CTAG	4 cut(s)	99, 206, 339, 507
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	3 cut(s)	302, 431, 482
GsaI	CCCAGC	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	472
HapII	CCGG	3 cut(s)	113, 348, 469
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	215
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	53
HindII	GTYRAC	1 cut(s)	53
HinfI	GANTC	2 cut(s)	165, 175
HpaII	CCGG	3 cut(s)	113, 348, 469
HphI	GGTGA	1 cut(s)	519
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	4 cut(s)	36, 172, 179, 264
Hpy8I	GTNNAC	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	532
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 478
HpyF3I	CTNAG	1 cut(s)	297
Hsp92II	CATG	1 cut(s)	215
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	5 cut(s)	115, 199, 260, 377, 471
LpnPI	CCDG	8 cut(s)	3, 126, 249, 272, 315, 361, 450, 482
Lsp1109I	GCAGC	2 cut(s)	288, 417
LweI	GCATC	1 cut(s)	389
MaeI	CTAG	4 cut(s)	99, 206, 339, 507
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	5 cut(s)	89, 144, 160, 239, 335
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	4 cut(s)	39, 63, 67, 360
MnlI	CCTC	2 cut(s)	424, 483
MroXI	GAANNNNTTC	1 cut(s)	151
MseI	TTAA	3 cut(s)	42, 66, 90
MspI	CCGG	3 cut(s)	113, 348, 469
MwoI	GCNNNNNNNGC	2 cut(s)	30, 478
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	2 cut(s)	256, 504
NspI	RCATGY	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	380
PdmI	GAANNNNTTC	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	165, 175
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	3 cut(s)	303, 432, 483
PpuMI	RGGWCCY	1 cut(s)	503
PshBI	ATTAAT	2 cut(s)	42, 66
Psp5II	RGGWCCY	1 cut(s)	503
PspFI	CCCAGC	1 cut(s)	329
PspN4I	GGNNCC	2 cut(s)	256, 504
PspPI	GGNCC	1 cut(s)	503
PspPPI	RGGWCCY	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	181
SalI	GTCGAC	1 cut(s)	51
SaqAI	TTAA	3 cut(s)	42, 66, 90
SatI	GCNGC	3 cut(s)	302, 431, 482
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	503
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	7 cut(s)	85, 120, 207, 303, 319, 331, 432
SfaNI	GCATC	1 cut(s)	389
SinI	GGWCC	1 cut(s)	503
Sse9I	AATT	4 cut(s)	39, 63, 67, 360
SsiI	CCGC	1 cut(s)	481
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	4 cut(s)	99, 206, 339, 507
TaqI	TCGA	4 cut(s)	52, 155, 399, 423
TasI	AATT	4 cut(s)	39, 63, 67, 360
TauI	GCSGC	1 cut(s)	484
TfiI	GAWTC	2 cut(s)	165, 175
Tru1I	TTAA	3 cut(s)	42, 66, 90
Tru9I	TTAA	3 cut(s)	42, 66, 90
TscAI	CASTG	1 cut(s)	35
TseI	GCWGC	2 cut(s)	301, 430
TspDTI	ATGAA	2 cut(s)	17, 74
TspRI	CASTG	1 cut(s)	35
Van91I	CCANNNNNTGG	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	503
VspI	ATTAAT	2 cut(s)	42, 66
XceI	RCATGY	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	151
XspI	CTAG	4 cut(s)	99, 206, 339, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.