Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002467.1

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Forward (+)

49767 .. 56533

Gene Structure 6767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002467.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgggggtggtttccattttatcaaggaagggtcgatgtgagagggcttcaattgacgaagtgtatcttgaccttactgatgcagcagaaaccatgttagctgaagctcctccagaaagcttggaagcaattgaggaggaagctctcaagtcacatgttttgggactcgataatgaggaaggaagtgaagcccaagaaaatgcaagtagatggctctgcaaaagcaatgctgatcgccgtgataagctgctagcttgtggggctctcattgttgcagaacttaggagacagaattcacttgttcagctggcatcactcataataagttttcagaggaaaagcgacaagaacactatggaatcaatacgggttaggctgctggtggtggagctcgcggggaaactctacgcccttgatctcactccaactaagataattaatacttttgaggtgtatgaccctaaagagggcatatgcatggtcaccattgccattatctccgccgagctcctcttgtccagcggtactccacgtcggtggggcttgcctcgtcgtcgctatgagactgccggacgggtgatgatgcttatctgtggcggggggagtcgtggtgtctggtttcaaggggcggcgatggctggtgtttgggtcgtgacaacggtggcagggcaacttaatcgtcaagatgcagtcggcgctctaggggcaggtgattcttttagatcgggtctggtgcttttcaggtttggtattggtctccaggtggtggcgttgtggtgtggccggtggtccttgaagtgggcggcgacggtttggagcggtcgtggcagtggctcgccggcagcgtgcatcgtcctcaacacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

288

Amino Acids

31.27

Weight (kDa)

8.16

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	698
Acc36I	ACCTGC	1 cut(s)	698
AccB7I	CCANNNNNTGG	1 cut(s)	766
AccBSI	CCGCTC	1 cut(s)	819
AccII	CGCG	1 cut(s)	395
AciI	CCGC	7 cut(s)	395, 501, 522, 597, 629, 803, 819
AcoI	YGGCCR	1 cut(s)	781
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	526
AfiI	CCNNNNNNNGG	4 cut(s)	466, 467, 766, 798
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	3 cut(s)	51, 623, 796
AjiI	CACGTC	1 cut(s)	533
AjnI	CCWGG	1 cut(s)	759
AleI	CACNNNNGTG	1 cut(s)	535
AluBI	AGCT	9 cut(s)	101, 107, 120, 143, 247, 254, 307, 391, 508
AluI	AGCT	9 cut(s)	101, 107, 120, 143, 247, 254, 307, 391, 508
Alw21I	GWGCWC	2 cut(s)	393, 510
Alw26I	GTCTC	3 cut(s)	280, 557, 761
AoxI	GGCC	1 cut(s)	781
ApeKI	GCWGC	4 cut(s)	83, 247, 376, 842
ApoI	RAATTY	1 cut(s)	292
AseI	ATTAAT	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	698
AspS9I	GGNCC	1 cut(s)	789
AsuHPI	GGTGA	3 cut(s)	475, 589, 722
AsuNHI	GCTAGC	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	789
BanII	GRGCYC	3 cut(s)	265, 393, 510
Bbv12I	GWGCWC	2 cut(s)	393, 510
BbvI	GCAGC	4 cut(s)	95, 234, 363, 854
BccI	CCATC	2 cut(s)	204, 628
BceAI	ACGGC	1 cut(s)	222
BcgI	CGANNNNNNTGC	2 cut(s)	659, 693
BciT130I	CCWGG	1 cut(s)	761
BcoDI	GTCTC	3 cut(s)	280, 557, 761
BfaI	CTAG	2 cut(s)	251, 701
BfoI	RGCGCY	1 cut(s)	699
BfuAI	ACCTGC	1 cut(s)	698
BisI	GCNGC	6 cut(s)	84, 248, 377, 630, 804, 843
BlsI	GCNGC	6 cut(s)	85, 249, 378, 631, 805, 844
Bme1390I	CCNGG	1 cut(s)	761
Bme18I	GGWCC	1 cut(s)	789
BmgBI	CACGTC	1 cut(s)	533
BmgT120I	GGNCC	1 cut(s)	789
BmrFI	CCNGG	1 cut(s)	761
BmsI	GCATC	5 cut(s)	70, 320, 573, 676, 858
BmtI	GCTAGC	1 cut(s)	254
BpmI	CTGGAG	2 cut(s)	96, 743
BpuEI	CTTGAG	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	587
BsaI	GGTCTC	1 cut(s)	761
BsaXI	ACNNNNNCTCC	4 cut(s)	595, 625, 808, 838
Bsc4I	CCNNNNNNNGG	4 cut(s)	466, 467, 766, 798
Bse118I	RCCGGY	2 cut(s)	783, 838
Bse3DI	GCAATG	2 cut(s)	232, 486
Bse8I	GATNNNNATC	1 cut(s)	587
BseBI	CCWGG	1 cut(s)	761
BseJI	GATNNNNATC	1 cut(s)	587
BseLI	CCNNNNNNNGG	4 cut(s)	466, 467, 766, 798
BseMI	GCAATG	2 cut(s)	232, 486
BseRI	GAGGAG	3 cut(s)	99, 149, 500
BseXI	GCAGC	4 cut(s)	95, 234, 363, 854
Bsh1236I	CGCG	1 cut(s)	395
Bsh1285I	CGRYCG	1 cut(s)	823
BshFI	GGCC	1 cut(s)	783
BsiEI	CGRYCG	1 cut(s)	823
BsiHKAI	GWGCWC	2 cut(s)	393, 510
BsiSI	CCGG	3 cut(s)	570, 784, 839
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	4 cut(s)	466, 467, 766, 798
BsmAI	GTCTC	3 cut(s)	280, 557, 761
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	783
Bso31I	GGTCTC	1 cut(s)	761
Bsp1286I	GDGCHC	3 cut(s)	265, 393, 510
Bsp143I	GATC	3 cut(s)	232, 415, 722
BspACI	CCGC	7 cut(s)	395, 501, 522, 597, 629, 803, 819
BspANI	GGCC	1 cut(s)	783
BspFNI	CGCG	1 cut(s)	395
BspMI	ACCTGC	1 cut(s)	698
BspOI	GCTAGC	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	761
BsrBI	CCGCTC	1 cut(s)	819
BsrDI	GCAATG	2 cut(s)	232, 486
BsrFI	RCCGGY	2 cut(s)	783, 838
BssAI	RCCGGY	2 cut(s)	783, 838
BssMI	GATC	3 cut(s)	232, 415, 722
Bst2UI	CCWGG	1 cut(s)	761
Bst4CI	ACNGT	2 cut(s)	661, 811
BstC8I	GCNNGC	7 cut(s)	252, 309, 393, 545, 836, 840, 847
BstDEI	CTNAG	2 cut(s)	281, 429
BstEII	GGTNACC	1 cut(s)	481
BstFNI	CGCG	1 cut(s)	395
BstH2I	RGCGCY	1 cut(s)	699
BstHHI	GCGC	1 cut(s)	698
BstKTI	GATC	3 cut(s)	235, 418, 725
BstMAI	GTCTC	3 cut(s)	280, 557, 761
BstMBI	GATC	3 cut(s)	232, 415, 722
BstMCI	CGRYCG	1 cut(s)	823
BstMWI	GCNNNNNNNGC	5 cut(s)	260, 635, 695, 704, 825
BstNI	CCWGG	1 cut(s)	761
BstNSI	RCATGY	1 cut(s)	158
BstPI	GGTNACC	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	759
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	4 cut(s)	95, 234, 363, 854
BstXI	CCANNNNNNTGG	1 cut(s)	537
BsuRI	GGCC	1 cut(s)	783
BtgZI	GCGATG	1 cut(s)	647
BtrI	CACGTC	1 cut(s)	533
BtsI	GCAGTG	1 cut(s)	835
BtsIMutI	CAGTG	1 cut(s)	835
BveI	ACCTGC	1 cut(s)	698
Cac8I	GCNNGC	7 cut(s)	252, 309, 393, 545, 836, 840, 847
CfoI	GCGC	1 cut(s)	698
Cfr10I	RCCGGY	2 cut(s)	783, 838
Cfr13I	GGNCC	1 cut(s)	789
Csp6I	GTAC	1 cut(s)	525
CviAII	CATG	4 cut(s)	94, 155, 478, 864
CviQI	GTAC	1 cut(s)	525
DdeI	CTNAG	2 cut(s)	281, 429
DpnI	GATC	3 cut(s)	234, 417, 724
DpnII	GATC	3 cut(s)	232, 415, 722
EaeI	YGGCCR	1 cut(s)	781
EciI	GGCGGA	1 cut(s)	490
Ecl136II	GAGCTC	2 cut(s)	391, 508
Eco24I	GRGCYC	3 cut(s)	265, 393, 510
Eco31I	GGTCTC	1 cut(s)	761
Eco47I	GGWCC	1 cut(s)	789
Eco53kI	GAGCTC	2 cut(s)	391, 508
Eco57I	CTGAAG	1 cut(s)	123
Eco91I	GGTNACC	1 cut(s)	481
EcoICRI	GAGCTC	2 cut(s)	391, 508
EcoO65I	GGTNACC	1 cut(s)	481
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	759
EcoT22I	ATGCAT	1 cut(s)	479
EcoT38I	GRGCYC	3 cut(s)	265, 393, 510
FaeI	CATG	4 cut(s)	97, 158, 481, 867
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	4 cut(s)	93, 154, 477, 863
FauI	CCCGC	2 cut(s)	388, 590
FauNDI	CATATG	1 cut(s)	473
Fnu4HI	GCNGC	6 cut(s)	84, 248, 377, 630, 804, 843
FriOI	GRGCYC	3 cut(s)	265, 393, 510
Fsp4HI	GCNGC	6 cut(s)	84, 248, 377, 630, 804, 843
FspBI	CTAG	2 cut(s)	251, 701
GlaI	GCGC	1 cut(s)	697
GluI	GCNGC	6 cut(s)	84, 248, 377, 630, 804, 843
GsuI	CTGGAG	2 cut(s)	96, 743
HaeII	RGCGCY	1 cut(s)	699
HaeIII	GGCC	1 cut(s)	783
HapII	CCGG	3 cut(s)	570, 784, 839
HhaI	GCGC	1 cut(s)	698
Hin1II	CATG	4 cut(s)	97, 158, 481, 867
Hin6I	GCGC	1 cut(s)	696
HinP1I	GCGC	1 cut(s)	696
HindIII	AAGCTT	1 cut(s)	118
HinfI	GANTC	4 cut(s)	165, 359, 604, 713
HpaII	CCGG	3 cut(s)	570, 784, 839
HphI	GGTGA	3 cut(s)	475, 589, 722
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	4 cut(s)	68, 113, 652, 683
Hpy99I	CGWCG	4 cut(s)	537, 555, 558, 811
HpyAV	CCTTC	2 cut(s)	22, 173
HpyCH4III	ACNGT	2 cut(s)	661, 811
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	7 cut(s)	83, 203, 219, 275, 477, 689, 849
HpyF10VI	GCNNNNNNNGC	5 cut(s)	260, 635, 695, 704, 825
HpyF3I	CTNAG	2 cut(s)	281, 429
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	4 cut(s)	97, 158, 481, 867
HspAI	GCGC	1 cut(s)	696
KroI	GCCGGC	1 cut(s)	838
KroNI	GCCGGC	1 cut(s)	840
Kzo9I	GATC	3 cut(s)	232, 415, 722
LmnI	GCTCC	4 cut(s)	112, 388, 513, 816
Lsp1109I	GCAGC	4 cut(s)	95, 234, 363, 854
LweI	GCATC	5 cut(s)	70, 320, 573, 676, 858
MaeI	CTAG	2 cut(s)	251, 701
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	3 cut(s)	150, 481, 652
MalI	GATC	3 cut(s)	234, 417, 724
MbiI	CCGCTC	1 cut(s)	819
MboI	GATC	3 cut(s)	232, 415, 722
MfeI	CAATTG	2 cut(s)	51, 129
MhlI	GDGCHC	3 cut(s)	265, 393, 510
MluCI	AATT	4 cut(s)	51, 129, 292, 435
MlyI	GAGTC	2 cut(s)	159, 613
MmeI	TCCRAC	1 cut(s)	449
Mph1103I	ATGCAT	1 cut(s)	479
MroNI	GCCGGC	1 cut(s)	838
MseI	TTAA	2 cut(s)	438, 675
MslI	CAYNNNNRTG	2 cut(s)	476, 535
MspA1I	CMGCKG	2 cut(s)	307, 522
MspI	CCGG	3 cut(s)	570, 784, 839
MspR9I	CCNGG	1 cut(s)	761
MunI	CAATTG	2 cut(s)	51, 129
MvaI	CCWGG	1 cut(s)	761
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	5 cut(s)	260, 635, 695, 704, 825
NaeI	GCCGGC	1 cut(s)	840
NdeI	CATATG	1 cut(s)	473
NdeII	GATC	3 cut(s)	232, 415, 722
NgoMIV	GCCGGC	1 cut(s)	838
NheI	GCTAGC	1 cut(s)	250
NlaIII	CATG	4 cut(s)	97, 158, 481, 867
NmeAIII	GCCGAG	1 cut(s)	529
NmuCI	GTSAC	3 cut(s)	150, 481, 652
NsiI	ATGCAT	1 cut(s)	479
NspI	RCATGY	1 cut(s)	158
OliI	CACNNNNGTG	1 cut(s)	535
PaqCI	CACCTGC	1 cut(s)	698
PciI	ACATGT	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	842
PdiI	GCCGGC	1 cut(s)	840
PfeI	GAWTC	2 cut(s)	359, 713
PflMI	CCANNNNNTGG	1 cut(s)	766
PkrI	GCNGC	6 cut(s)	85, 249, 378, 631, 805, 844
PleI	GAGTC	2 cut(s)	159, 612
PpsI	GAGTC	2 cut(s)	159, 612
PscI	ACATGT	1 cut(s)	154
PshBI	ATTAAT	1 cut(s)	438
Psp124BI	GAGCTC	2 cut(s)	393, 510
Psp6I	CCWGG	1 cut(s)	759
PspEI	GGTNACC	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	759
PspPI	GGNCC	1 cut(s)	789
PvuII	CAGCTG	1 cut(s)	307
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
RseI	CAYNNNNRTG	2 cut(s)	476, 535
SacI	GAGCTC	2 cut(s)	393, 510
SaqAI	TTAA	2 cut(s)	438, 675
SatI	GCNGC	6 cut(s)	84, 248, 377, 630, 804, 843
Sau3AI	GATC	3 cut(s)	232, 415, 722
Sau96I	GGNCC	1 cut(s)	789
SchI	GAGTC	2 cut(s)	159, 613
ScrFI	CCNGG	1 cut(s)	761
SduI	GDGCHC	3 cut(s)	265, 393, 510
SfaNI	GCATC	5 cut(s)	70, 320, 573, 676, 858
SinI	GGWCC	1 cut(s)	789
SmiMI	CAYNNNNRTG	2 cut(s)	476, 535
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	4 cut(s)	51, 129, 292, 435
SsiI	CCGC	7 cut(s)	395, 501, 522, 597, 629, 803, 819
SspMI	CTAG	2 cut(s)	251, 701
SstI	GAGCTC	2 cut(s)	393, 510
StyD4I	CCNGG	1 cut(s)	759
TaaI	ACNGT	2 cut(s)	661, 811
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	2 cut(s)	34, 168
TasI	AATT	4 cut(s)	51, 129, 292, 435
TauI	GCSGC	2 cut(s)	632, 806
TfiI	GAWTC	2 cut(s)	359, 713
Tru1I	TTAA	2 cut(s)	438, 675
Tru9I	TTAA	2 cut(s)	438, 675
TscAI	CASTG	1 cut(s)	835
TseFI	GTSAC	3 cut(s)	150, 481, 652
TseI	GCWGC	4 cut(s)	83, 247, 376, 842
Tsp45I	GTSAC	3 cut(s)	150, 481, 652
TspRI	CASTG	1 cut(s)	835
Van91I	CCANNNNNTGG	1 cut(s)	766
VpaK11BI	GGWCC	1 cut(s)	789
VspI	ATTAAT	1 cut(s)	438
XapI	RAATTY	1 cut(s)	292
XceI	RCATGY	1 cut(s)	158
XspI	CTAG	2 cut(s)	251, 701
Zsp2I	ATGCAT	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.