Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Forward (+)

16231094 .. 16236999

Gene Structure 5906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G013690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2151 bp

ATGCCAGTGGCAAGACCTGAAACATCGGATTCGAGAGTCATTGCTCATGTAGACATGGACTGCTTCTACGTTCAAGTGGAACAAAGGAAAAATCCGGAGTTAAGGGGCTTACCTACGGCTGTGGTACAGTATAACTCATGGCAAGGTGGGAGCTTGATTGCTGTCAGCTATGAGGCCCGGAGATGTGGTGTGAAACGTTCCATGCGAGGTGCTGAGTCAAAGCAAGTCTGCCCAGAGATCCAGCTCGTCCAACTCCCAGCAGCACGTGGTAAAGCTGACCTGAACTCATACCGGAATGCCGGTTCAGAGGTGGTTTCCATTTTATCAAGGAAGGGTCGATGTGAGAGGGCTTCAATTGACGAAGTGTATCTTGACCTTACTGATGCAGCAGAAACCATGTTAGCTGAAGCTCCTCCAGAAAGCTTGGAAGCAATTGAGGAGGAAGCTCTCAAGTCACATGTTTTGGGACTCGATAATGAGGACGGCAGTGAAGCCAAAGAAAATGTGAGGAAATGGCTTTGCAAAACCAATGCTGATCGTCATGATAAGCTATTAGCTTGTGGGGCTCTCATCGTTGCAGAACTTAGGTTGCTAGTGTTGAAGGAGACAGAATTTACTTGTTCAGCTGGCATTGCTCATAATAAGATGCTGGCTAAACTTGCAAGTGGTATGAATAAACCTGCACAACAGACTGTTGTGCCGTTATCATCTGTGAAAGGATTGCTAGAGTCCTTGCCAATTAAGAAAATGAAACAGCTTGGAGGAAAGCTGGGGAGTTCCTTACAAACTGACCTGGGTGTTAACACTGTCGGAGATTTATTGCAGTTTTCAGAGGAAAAGCTACAGCAACGCTACGGAATCAATACTGGTACCTGGTTATGGAATATTGCAAGGGGGATAAGTGGGGAAGAAGTTGAGGGGCGCCTTCTTCCGAAGAGCCATGGTTCTGGGAAGACGTTTCCTGGACCTCAGGCTTTGAAGACGATTTCTTCTGTTCAACACTGGCTTAATGAACTTTGTGAAGATTTGAGTGAACGTCTTCAATTGGACTTGGATGAAAATAAACGTATCGCTCATACACTAGTGCTGCATGCCAACGCATACAAGGCCAGTGATTCAGATTCACGGAAGAAGTTCCCTTCTAAATCTTGTCCCCTTAGGTATGGGGCTGCCAAGATACAAGAAGATGCTCTTAATCTCTTTCAAGCTGCATTACGTGAATACTTGGGTTTATTCACAGGCAAAATCCAAGGAAGTCAAAATAACCAATGGGGAATAACATCCCTCTCTGTTTCAGCAAGTAAAATTGTTCCTATACCATCGGGAACAGCTTCAATTATGAAATACTTTCATGGTCATCAGCCATCCTCTTCGACAAAGCAATCACAGGATAATTTCATTGAAGAATCTGTGCCTCTACCACCTTCAGGTAATGAGAACTACTTGGAGCTGAATGTAGATAAGCCACAGATCGAGTTACCTTGTGAAGAAACTACAATCAGGTATCCTGTGCCTAGTTTGCATCAACTGGAAGACAAAAACAATTTGTTGAATGACCAGAATCTAATGTGTTCTTCTTTAAAAAATCAAGCACAAGATGAATCCATGCAAGAAAGTTTACCCTTGCCAACCTCAGGGAGTGAACACTTCTCAGGAGTGAATCAAAGTCGGCTAATGAAAAGTTATTCTGGTGAAGACCCTTCTGTTAAATTGGCCATGCCTGGATTCAATAGACTGGAGCAGAAAAGAAAAACCGTGAAAGACAAGGGAACCTCTTCAATATTGAGATTTTTTAAGAACCAAGATCCATCTTCCTCTCCAAAAAAGCTAGAACATAGTTTTTGTACAGGCCCTCAGTCTAGAAGTGATAATTATTTGGATCATAATCAATCTGAGTTGCCAAAAGAAAGGCCTTTTGAAGAAACTAGGACTTCTAGTGCACCTAGTTCAACTCAATTTGAACAAAGAAGGGGAGTATGGAGTTACAATACTGACGAGATTGACCCCTCTGTCATTGATGAGTTACCACCACATATTCAACAAGAAGTTCGTGCCTGGCTCAGGCCTCACAAGCAGCAAAATGTAGCGAAACGGGGTTCTAAACTATTTCTTACCCACAAGGAATGCATAGTCTATGATATTCTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

716

Amino Acids

79.68

Weight (kDa)

6.66

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMS	PF00817	17 - 222	1.2e-40	impB/mucB/samB family
POLH-Rev1_HhH	PF21704	245 - 300	5.3e-24	DNApol eta/Rev1, HhH motif
IMS_HHH_1	PF21999	256 - 300	4.8e-06	DNA polymerase-iota, thumb domain
IMS_C	PF11799	311 - 438	2.3e-09	impB/mucB/samB family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2009
Acc36I	ACCTGC	1 cut(s)	688
Acc65I	GGTACC	1 cut(s)	869
AccB1I	GGYRCC	2 cut(s)	869, 921
AccI	GTMKAC	1 cut(s)	51
AccIII	TCCGGA	1 cut(s)	94
AclI	AACGTT	1 cut(s)	196
AclWI	GGATC	3 cut(s)	232, 1799, 1887
AcoI	YGGCCR	1 cut(s)	1713
AcsI	RAATTY	1 cut(s)	611
AcuI	CTGAAG	2 cut(s)	426, 1410
AcvI	CACGTG	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	922
AfaI	GTAC	3 cut(s)	126, 871, 1846
AfiI	CCNNNNNNNGG	4 cut(s)	879, 1427, 1634, 2061
AflIII	ACRYGT	1 cut(s)	457
AhlI	ACTAGT	1 cut(s)	1081
AjnI	CCWGG	5 cut(s)	792, 872, 961, 1720, 2054
AloI	GAACNNNNNNTCC	2 cut(s)	286, 318
Alw21I	GWGCWC	1 cut(s)	1942
Alw26I	GTCTC	1 cut(s)	599
Alw44I	GTGCAC	1 cut(s)	1938
AlwI	GGATC	3 cut(s)	232, 1799, 1887
Aor13HI	TCCGGA	1 cut(s)	94
AoxI	GGCC	6 cut(s)	174, 1107, 1713, 1849, 1910, 2063
ApaLI	GTGCAC	1 cut(s)	1938
ApeKI	GCWGC	6 cut(s)	260, 386, 1087, 1169, 1208, 2074
ApoI	RAATTY	1 cut(s)	611
Asp700I	GAANNNNTTC	4 cut(s)	1038, 1133, 1330, 1774
Asp718I	GGTACC	1 cut(s)	869
AspLEI	GCGC	1 cut(s)	924
AspS9I	GGNCC	3 cut(s)	175, 965, 1850
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	1703
AvaII	GGWCC	1 cut(s)	965
AxyI	CCTNAGG	3 cut(s)	969, 1157, 1633
BaeGI	GKGCMC	1 cut(s)	1942
BalI	TGGCCA	1 cut(s)	1715
BanI	GGYRCC	2 cut(s)	869, 921
BanII	GRGCYC	1 cut(s)	568
BbrPI	CACGTG	1 cut(s)	266
BbsI	GAAGAC	5 cut(s)	959, 986, 1031, 1539, 1701
Bbv12I	GWGCWC	1 cut(s)	1942
BbvI	GCAGC	6 cut(s)	272, 398, 1074, 1156, 1195, 2086
BccI	CCATC	3 cut(s)	1327, 1372, 1816
BceAI	ACGGC	3 cut(s)	132, 499, 685
BciT130I	CCWGG	5 cut(s)	794, 874, 963, 1722, 2056
BciVI	GTATCC	1 cut(s)	1515
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	599
BcuI	ACTAGT	1 cut(s)	1081
BfaI	CTAG	9 cut(s)	593, 725, 1082, 1515, 1829, 1860, 1926, 1935, 1944
BfmI	CTRYAG	1 cut(s)	842
BfoI	RGCGCY	1 cut(s)	925
BfuAI	ACCTGC	1 cut(s)	688
BfuI	GTATCC	1 cut(s)	1515
BisI	GCNGC	6 cut(s)	261, 387, 1088, 1170, 1209, 2075
BlsI	GCNGC	6 cut(s)	262, 388, 1089, 1171, 1210, 2076
Bme1390I	CCNGG	6 cut(s)	178, 794, 874, 963, 1722, 2056
Bme18I	GGWCC	1 cut(s)	965
BmgT120I	GGNCC	3 cut(s)	175, 965, 1850
BmiI	GGNNCC	3 cut(s)	871, 923, 1771
BmrFI	CCNGG	6 cut(s)	178, 794, 874, 963, 1722, 2056
BmsI	GCATC	4 cut(s)	373, 636, 1177, 1531
BpiI	GAAGAC	5 cut(s)	959, 986, 1031, 1539, 1701
BpmI	CTGGAG	2 cut(s)	399, 1757
Bpu10I	CCTNAGC	1 cut(s)	2060
BpuEI	CTTGAG	1 cut(s)	434
BpuMI	CCSGG	1 cut(s)	178
BsaAI	YACGTR	2 cut(s)	266, 1217
BsaBI	GATNNNNATC	1 cut(s)	1884
BsaHI	GRCGYC	1 cut(s)	922
BsaJI	CCNNGG	3 cut(s)	793, 940, 1249
BsaWI	WCCGGW	2 cut(s)	94, 291
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	4 cut(s)	879, 1427, 1634, 2061
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	6 cut(s)	5, 871, 1007, 1110, 1533, 1740
Bse21I	CCTNAGG	3 cut(s)	969, 1157, 1633
Bse3DI	GCAATG	2 cut(s)	39, 630
Bse8I	GATNNNNATC	1 cut(s)	1884
BseAI	TCCGGA	1 cut(s)	94
BseBI	CCWGG	5 cut(s)	794, 874, 963, 1722, 2056
BseDI	CCNNGG	3 cut(s)	793, 940, 1249
BseGI	GGATG	3 cut(s)	1060, 1280, 1364
BseJI	GATNNNNATC	1 cut(s)	1884
BseLI	CCNNNNNNNGG	4 cut(s)	879, 1427, 1634, 2061
BseMI	GCAATG	2 cut(s)	39, 630
BseMII	CTCAG	7 cut(s)	204, 983, 1647, 1665, 1868, 1884, 2074
BseNI	ACTGG	6 cut(s)	5, 871, 1007, 1110, 1533, 1740
BseRI	GAGGAG	2 cut(s)	402, 452
BseSI	GKGCMC	1 cut(s)	1942
BseXI	GCAGC	6 cut(s)	272, 398, 1074, 1156, 1195, 2086
BseYI	CCCAGC	2 cut(s)	256, 769
BsgI	GTGCAG	1 cut(s)	666
BshFI	GGCC	6 cut(s)	176, 1109, 1715, 1851, 1912, 2065
BshNI	GGYRCC	2 cut(s)	869, 921
BsiHKAI	GWGCWC	1 cut(s)	1942
BsiSI	CCGG	4 cut(s)	95, 178, 292, 300
BslFI	GGGAC	2 cut(s)	480, 1137
BslI	CCNNNNNNNGG	4 cut(s)	879, 1427, 1634, 2061
BsmAI	GTCTC	1 cut(s)	599
BsmFI	GGGAC	2 cut(s)	480, 1137
BsmI	GAATGC	2 cut(s)	301, 2129
BsnI	GGCC	6 cut(s)	176, 1109, 1715, 1851, 1912, 2065
Bsp1286I	GDGCHC	2 cut(s)	568, 1942
Bsp13I	TCCGGA	1 cut(s)	94
Bsp1407I	TGTACA	1 cut(s)	1844
Bsp143I	GATC	5 cut(s)	237, 535, 1470, 1804, 1879
Bsp19I	CCATGG	1 cut(s)	940
BspANI	GGCC	6 cut(s)	176, 1109, 1715, 1851, 1912, 2065
BspCNI	CTCAG	7 cut(s)	205, 982, 1646, 1664, 1867, 1885, 2073
BspEI	TCCGGA	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	3 cut(s)	871, 923, 1771
BspMI	ACCTGC	1 cut(s)	688
BspPI	GGATC	3 cut(s)	232, 1799, 1887
BspQI	GCTCTTC	1 cut(s)	929
BspT107I	GGYRCC	2 cut(s)	869, 921
BsrDI	GCAATG	2 cut(s)	39, 630
BsrFI	RCCGGY	1 cut(s)	299
BsrGI	TGTACA	1 cut(s)	1844
BsrI	ACTGG	6 cut(s)	5, 871, 1007, 1110, 1533, 1740
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	3 cut(s)	793, 940, 1249
BssMI	GATC	5 cut(s)	237, 535, 1470, 1804, 1879
BssNI	GRCGYC	1 cut(s)	922
BssT1I	CCWWGG	2 cut(s)	940, 1249
Bst2UI	CCWGG	5 cut(s)	794, 874, 963, 1722, 2056
Bst4CI	ACNGT	4 cut(s)	129, 694, 808, 1756
Bst6I	CTCTTC	3 cut(s)	929, 1375, 1780
BstACI	GRCGYC	1 cut(s)	922
BstAUI	TGTACA	1 cut(s)	1844
BstBAI	YACGTR	2 cut(s)	266, 1217
BstC8I	GCNNGC	3 cut(s)	628, 651, 1092
BstDEI	CTNAG	9 cut(s)	213, 584, 969, 1157, 1633, 1651, 1854, 1893, 2060
BstDSI	CCRYGG	1 cut(s)	940
BstENI	CCTNNNNNAGG	1 cut(s)	2059
BstF5I	GGATG	3 cut(s)	1060, 1280, 1364
BstH2I	RGCGCY	1 cut(s)	925
BstHHI	GCGC	1 cut(s)	924
BstKTI	GATC	5 cut(s)	240, 538, 1473, 1807, 1882
BstMAI	GTCTC	1 cut(s)	599
BstMBI	GATC	5 cut(s)	237, 535, 1470, 1804, 1879
BstMWI	GCNNNNNNNGC	6 cut(s)	563, 632, 659, 1106, 1519, 2071
BstNI	CCWGG	5 cut(s)	794, 874, 963, 1722, 2056
BstNSI	RCATGY	2 cut(s)	461, 1094
BstSCI	CCNGG	6 cut(s)	176, 792, 872, 961, 1720, 2054
BstSFI	CTRYAG	1 cut(s)	842
BstSLI	GKGCMC	1 cut(s)	1942
BstV1I	GCAGC	6 cut(s)	272, 398, 1074, 1156, 1195, 2086
BstV2I	GAAGAC	5 cut(s)	959, 986, 1031, 1539, 1701
BstX2I	RGATCY	2 cut(s)	237, 1804
BstXI	CCANNNNNNTGG	1 cut(s)	947
BstYI	RGATCY	2 cut(s)	237, 1804
Bsu36I	CCTNAGG	3 cut(s)	969, 1157, 1633
BsuI	GTATCC	1 cut(s)	1515
BsuRI	GGCC	6 cut(s)	176, 1109, 1715, 1851, 1912, 2065
BtgI	CCRYGG	1 cut(s)	940
BtsCI	GGATG	3 cut(s)	1060, 1280, 1364
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	5 cut(s)	12, 493, 804, 1000, 1117
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	3 cut(s)	628, 651, 1092
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	1 cut(s)	924
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	3 cut(s)	175, 965, 1850
CsiI	ACCWGGT	1 cut(s)	872
Csp6I	GTAC	3 cut(s)	125, 870, 1845
CviQI	GTAC	3 cut(s)	125, 870, 1845
DdeI	CTNAG	9 cut(s)	213, 584, 969, 1157, 1633, 1651, 1854, 1893, 2060
DinI	GGCGCC	1 cut(s)	923
DpnI	GATC	5 cut(s)	239, 537, 1472, 1806, 1881
DpnII	GATC	5 cut(s)	237, 535, 1470, 1804, 1879
DraI	TTTAAA	1 cut(s)	1581
DrdI	GACNNNNNNGTC	1 cut(s)	2009
DseDI	GACNNNNNNGTC	1 cut(s)	2009
EaeI	YGGCCR	1 cut(s)	1713
Eam1104I	CTCTTC	3 cut(s)	929, 1375, 1780
EarI	CTCTTC	3 cut(s)	929, 1375, 1780
Eco130I	CCWWGG	2 cut(s)	940, 1249
Eco147I	AGGCCT	2 cut(s)	1912, 2065
Eco24I	GRGCYC	1 cut(s)	568
Eco47I	GGWCC	1 cut(s)	965
Eco57I	CTGAAG	2 cut(s)	426, 1410
Eco72I	CACGTG	1 cut(s)	266
Eco81I	CCTNAGG	3 cut(s)	969, 1157, 1633
EcoNI	CCTNNNNNAGG	1 cut(s)	2059
EcoO109I	RGGNCCY	1 cut(s)	1850
EcoRII	CCWGG	5 cut(s)	792, 872, 961, 1720, 2054
EcoT14I	CCWWGG	2 cut(s)	940, 1249
EcoT22I	ATGCAT	1 cut(s)	2129
EcoT38I	GRGCYC	1 cut(s)	568
EgeI	GGCGCC	1 cut(s)	923
EheI	GGCGCC	1 cut(s)	923
ErhI	CCWWGG	2 cut(s)	940, 1249
FalI	AAGNNNNNCTT	4 cut(s)	354, 386, 1176, 1208
FaqI	GGGAC	2 cut(s)	480, 1137
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	6 cut(s)	261, 387, 1088, 1170, 1209, 2075
FokI	GGATG	3 cut(s)	1067, 1267, 1351
FriOI	GRGCYC	1 cut(s)	568
Fsp4HI	GCNGC	6 cut(s)	261, 387, 1088, 1170, 1209, 2075
FspBI	CTAG	9 cut(s)	593, 725, 1082, 1515, 1829, 1860, 1926, 1935, 1944
GlaI	GCGC	1 cut(s)	923
GluI	GCNGC	6 cut(s)	261, 387, 1088, 1170, 1209, 2075
GsaI	CCCAGC	2 cut(s)	260, 773
GsuI	CTGGAG	2 cut(s)	399, 1757
HaeII	RGCGCY	1 cut(s)	925
HaeIII	GGCC	6 cut(s)	176, 1109, 1715, 1851, 1912, 2065
HapII	CCGG	4 cut(s)	95, 178, 292, 300
HhaI	GCGC	1 cut(s)	924
Hin1I	GRCGYC	1 cut(s)	922
Hin6I	GCGC	1 cut(s)	922
HinP1I	GCGC	1 cut(s)	922
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HindIII	AAGCTT	1 cut(s)	421
HpaI	GTTAAC	1 cut(s)	802
HpaII	CCGG	4 cut(s)	95, 178, 292, 300
HphI	GGTGA	1 cut(s)	1703
Hpy166II	GTNNAC	6 cut(s)	52, 802, 1034, 1619, 1643, 1940
Hpy188I	TCNGA	7 cut(s)	28, 307, 812, 832, 933, 1120, 1894
Hpy188III	TCNNGA	8 cut(s)	33, 95, 371, 416, 542, 1323, 1653, 1860
Hpy8I	GTNNAC	6 cut(s)	52, 802, 1034, 1619, 1643, 1940
HpyAV	CCTTC	7 cut(s)	325, 595, 935, 1149, 1434, 1710, 1962
HpyCH4III	ACNGT	4 cut(s)	129, 694, 808, 1756
HpyCH4IV	ACGT	7 cut(s)	69, 196, 265, 956, 1036, 1066, 1216
HpyF10VI	GCNNNNNNNGC	6 cut(s)	563, 632, 659, 1106, 1519, 2071
HpyF3I	CTNAG	9 cut(s)	213, 584, 969, 1157, 1633, 1651, 1854, 1893, 2060
HpySE526I	ACGT	7 cut(s)	69, 196, 265, 956, 1036, 1066, 1216
Hsp92I	GRCGYC	1 cut(s)	922
HspAI	GCGC	1 cut(s)	922
KasI	GGCGCC	1 cut(s)	921
Kpn2I	TCCGGA	1 cut(s)	94
KpnI	GGTACC	1 cut(s)	873
KspAI	GTTAAC	1 cut(s)	802
Kzo9I	GATC	5 cut(s)	237, 535, 1470, 1804, 1879
LguI	GCTCTTC	1 cut(s)	929
LmnI	GCTCC	4 cut(s)	150, 415, 1447, 1738
Lsp1109I	GCAGC	6 cut(s)	272, 398, 1074, 1156, 1195, 2086
LweI	GCATC	4 cut(s)	373, 636, 1177, 1531
MabI	ACCWGGT	1 cut(s)	872
MaeI	CTAG	9 cut(s)	593, 725, 1082, 1515, 1829, 1860, 1926, 1935, 1944
MaeII	ACGT	7 cut(s)	69, 196, 265, 956, 1036, 1066, 1216
MaeIII	GTNAC	4 cut(s)	453, 1476, 1982, 2022
MalI	GATC	5 cut(s)	239, 537, 1472, 1806, 1881
MboI	GATC	5 cut(s)	237, 535, 1470, 1804, 1879
MfeI	CAATTG	3 cut(s)	354, 432, 1043
MflI	RGATCY	2 cut(s)	237, 1804
MhlI	GDGCHC	2 cut(s)	568, 1942
MlsI	TGGCCA	1 cut(s)	1715
MluNI	TGGCCA	1 cut(s)	1715
Mly113I	GGCGCC	1 cut(s)	922
MlyI	GAGTC	4 cut(s)	45, 224, 462, 737
MmeI	TCCRAC	2 cut(s)	274, 790
Mox20I	TGGCCA	1 cut(s)	1715
Mph1103I	ATGCAT	1 cut(s)	2129
MroI	TCCGGA	1 cut(s)	94
MroXI	GAANNNNTTC	4 cut(s)	1038, 1133, 1330, 1774
MscI	TGGCCA	1 cut(s)	1715
MseI	TTAA	8 cut(s)	101, 741, 801, 1008, 1194, 1580, 1707, 1794
Msp20I	TGGCCA	1 cut(s)	1715
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	4 cut(s)	95, 178, 292, 300
MspR9I	CCNGG	6 cut(s)	178, 794, 874, 963, 1722, 2056
MunI	CAATTG	3 cut(s)	354, 432, 1043
Mva1269I	GAATGC	2 cut(s)	301, 2129
MvaI	CCWGG	5 cut(s)	794, 874, 963, 1722, 2056
MwoI	GCNNNNNNNGC	6 cut(s)	563, 632, 659, 1106, 1519, 2071
NarI	GGCGCC	1 cut(s)	922
NciI	CCSGG	1 cut(s)	178
NcoI	CCATGG	1 cut(s)	940
NdeII	GATC	5 cut(s)	237, 535, 1470, 1804, 1879
NlaIV	GGNNCC	3 cut(s)	871, 923, 1771
NmuCI	GTSAC	1 cut(s)	453
NsiI	ATGCAT	1 cut(s)	2129
NspI	RCATGY	2 cut(s)	461, 1094
PaeI	GCATGC	1 cut(s)	1094
PagI	TCATGA	1 cut(s)	541
PceI	AGGCCT	2 cut(s)	1912, 2065
PciI	ACATGT	1 cut(s)	457
PciSI	GCTCTTC	1 cut(s)	929
PcsI	WCGNNNNNNNCGW	1 cut(s)	202
PctI	GAATGC	2 cut(s)	301, 2129
PdmI	GAANNNNTTC	4 cut(s)	1038, 1133, 1330, 1774
PfeI	GAWTC	9 cut(s)	29, 858, 1115, 1121, 1406, 1561, 1601, 1660, 1725
PfoI	TCCNGGA	1 cut(s)	961
PkrI	GCNGC	6 cut(s)	262, 388, 1089, 1171, 1210, 2076
PleI	GAGTC	4 cut(s)	44, 223, 462, 736
PluTI	GGCGCC	1 cut(s)	925
PmaCI	CACGTG	1 cut(s)	266
PmlI	CACGTG	1 cut(s)	266
PpsI	GAGTC	4 cut(s)	44, 223, 462, 736
Ppu21I	YACGTR	2 cut(s)	266, 1217
PscI	ACATGT	1 cut(s)	457
Psp1406I	AACGTT	1 cut(s)	196
Psp6I	CCWGG	5 cut(s)	792, 872, 961, 1720, 2054
PspCI	CACGTG	1 cut(s)	266
PspFI	CCCAGC	2 cut(s)	256, 769
PspGI	CCWGG	5 cut(s)	792, 872, 961, 1720, 2054
PspN4I	GGNNCC	3 cut(s)	871, 923, 1771
PspPI	GGNCC	3 cut(s)	175, 965, 1850
PsuI	RGATCY	2 cut(s)	237, 1804
PvuII	CAGCTG	1 cut(s)	626
RsaI	GTAC	3 cut(s)	126, 871, 1846
RsaNI	GTAC	3 cut(s)	125, 870, 1845
SapI	GCTCTTC	1 cut(s)	929
SaqAI	TTAA	8 cut(s)	101, 741, 801, 1008, 1194, 1580, 1707, 1794
SatI	GCNGC	6 cut(s)	261, 387, 1088, 1170, 1209, 2075
Sau3AI	GATC	5 cut(s)	237, 535, 1470, 1804, 1879
Sau96I	GGNCC	3 cut(s)	175, 965, 1850
SchI	GAGTC	4 cut(s)	45, 224, 462, 737
ScrFI	CCNGG	6 cut(s)	178, 794, 874, 963, 1722, 2056
SduI	GDGCHC	2 cut(s)	568, 1942
SexAI	ACCWGGT	1 cut(s)	872
SfaNI	GCATC	4 cut(s)	373, 636, 1177, 1531
SfcI	CTRYAG	1 cut(s)	842
SfoI	GGCGCC	1 cut(s)	923
SinI	GGWCC	1 cut(s)	965
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
SpeI	ACTAGT	1 cut(s)	1081
SphI	GCATGC	1 cut(s)	1094
SseBI	AGGCCT	2 cut(s)	1912, 2065
SspDI	GGCGCC	1 cut(s)	921
SspI	AATATT	2 cut(s)	886, 1782
SspMI	CTAG	9 cut(s)	593, 725, 1082, 1515, 1829, 1860, 1926, 1935, 1944
StuI	AGGCCT	2 cut(s)	1912, 2065
StyD4I	CCNGG	6 cut(s)	176, 792, 872, 961, 1720, 2054
StyI	CCWWGG	2 cut(s)	940, 1249
TaaI	ACNGT	4 cut(s)	129, 694, 808, 1756
TaiI	ACGT	7 cut(s)	72, 199, 268, 959, 1039, 1069, 1219
TaqI	TCGA	5 cut(s)	32, 337, 471, 1373, 1473
TatI	WGTACW	1 cut(s)	1844
TfiI	GAWTC	9 cut(s)	29, 858, 1115, 1121, 1406, 1561, 1601, 1660, 1725
Tru1I	TTAA	8 cut(s)	101, 741, 801, 1008, 1194, 1580, 1707, 1794
Tru9I	TTAA	8 cut(s)	101, 741, 801, 1008, 1194, 1580, 1707, 1794
TscAI	CASTG	5 cut(s)	12, 493, 811, 1007, 1117
TseFI	GTSAC	1 cut(s)	453
TseI	GCWGC	6 cut(s)	260, 386, 1087, 1169, 1208, 2074
Tsp45I	GTSAC	1 cut(s)	453
TspDTI	ATGAA	9 cut(s)	686, 764, 1026, 1071, 1340, 1355, 1387, 1614, 1691
TspGWI	ACGGA	2 cut(s)	870, 1141
TspRI	CASTG	5 cut(s)	12, 493, 811, 1007, 1117
VneI	GTGCAC	1 cut(s)	1938
VpaK11BI	GGWCC	1 cut(s)	965
XagI	CCTNNNNNAGG	1 cut(s)	2059
XapI	RAATTY	1 cut(s)	611
XbaI	TCTAGA	1 cut(s)	1859
XceI	RCATGY	2 cut(s)	461, 1094
XmiI	GTMKAC	1 cut(s)	51
XmnI	GAANNNNTTC	4 cut(s)	1038, 1133, 1330, 1774
XspI	CTAG	9 cut(s)	593, 725, 1082, 1515, 1829, 1860, 1926, 1935, 1944
Zsp2I	ATGCAT	1 cut(s)	2129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.