Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Forward (+)

16882646 .. 16888844

Gene Structure 6199 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032594

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2172 bp

ATGCCAGTGGCAAGACCTGAAACATCGGATTCGAGAGTCATTGCTCATGTAGACATGGACTGCTTCTACGTTCAAGTGGAACAAAGGAAAAATCCGGAGTTAAGGGGCTTACCTACAGCTGTGGTACAGTATAACTCATGGCAAGGTGGGGGCTTGATTGCTGTCAGCTATGAGGCCCGGAAATATGGTGTGAAGCGTTCAATGCGAGGTGCTGAGTCAAAGCAAGTCTGCCCACAAATTCAGCTGGTCCAAGTCCCAGTAGCACGTGGCAAAGCTGACCTGAACTCATACCGGAATGCAGGTTCAGAGGTGGTTTCTATTCTATCAAGGAAGGGTCGATGTGAGAGGGCTTCAATTGACGAAGTGTATCTTGACCTTACCGATGCAGCAGAAACCATGTTAGCTGAAGCTCCTCCAGAAAGCTTGGAAGAAATTGAGGAGGAAGCTCTCAAGTCACATGTTTTGGGGCTCGATAATGAGGACGGAAGTGAAGCCAAAGAAAATGTGAGGAAATGGCTTTGCAAAAGCAATGCTGATCGTCGTGATAAGCTATTAGCTTGTGGGGCTCTCATTGTTGCAGAACTTAGGTTGCTAGTGTTGAAGGAGACAGAATTTACTTGTTCAGCTGGCATTGCTCATAACAAGATGCTGGCCAAACTTGCAAGTGGTATGAATAAACCTGCACAACAGACTGTTGTGACGTTATCATCTGTGAAAGGATTGCTAGAGTCCTTGCCAATTAAGAAAATGAAACAGCTTGGAGGAAAGCTGGGGAGTTCCTTACAAGCTGACCTGGGTGTTAACACTGTCGGAGATTTATTGCAGTTTTCAGAGGAAAAGCTACAGCAACGCTATGGAGTTAATACTGGTACCTGGTTATGGAATATTGCAAGGGGGATAAGTGGGGAAGAAGTTGAGGGGCGCCTTCTTCCGAAAAGCCATGGTTCTGGGAAGACATTTCCTGGACCTCAGGCTTTGAAGACGATTTCTTCTGTTCAACACTGGCTTAATGAACTTTGTGAAGATTTGAGTGAACGTCTTCAATTGGACTTGGATGAAAACAAACGTATCGCTCATACACTAGTGCTGCATGCCAATGCATACAAGGCCAGTGATTCAGATTCACAGAAGAAGTTCCCTTCTAAATCTTGTCCCCTTAGGTATGGGGCTGCCAAGATACAAGAAGATGCTCTTAATCTCTTTCAAGCTGCATTACGTGAATACTTGGGTTTATTCACAGCCAAAATCCAAGGAAGTCAAAATAACCAATGGGGAATAACATCCCTCTCTGTTTCAGCAAGTAGAATTGTTCCTATACCATCGGGAACAGCTTCAATTATGAAATACTTTCATGGTCATCAGCCATCCTCTTCGACAAAGCAATCACAGGATAATTTCTTTGAAGAATCTGCTCCTCCACCACCTTCAGGGAATGAGAACTACTCGGAGGTGAATGTAGATAAGCCACAGATCGAGTTACCTTGTGAAGAAACTACGATCAAGTATTTTGTGCCTAGTTTGCATCGACTGGAAGACAAAAAAAATTTGTTGAATGACCAGGGTATAAGAAATCCAAGGTCTGGCACTTCTCCTTGTGGAAAAAAAGGAAGCTCCTCCCTTGTGATTTTTCTCCCAGATCTTAGGAGTGAACACTTCTCAGGAGTGAATCAAAGTCAGCTAATGAAAAATTATTCTGGTGAAGACCCTTCCGTTAAATTGGCCATACCTGGATTCAATAGACTGGAGCAGAAAAGAAAAACAGTGAAAGACAAGGGAACCTCTTCAATATTGAGATTTTTTAAGAACCAAGATCCATCTTCCTCTCCAAAAAAGCTAGAACATGTAGAAAATACTGAAGATGCTAAAGCACTGCTATCTGTTGGCCCTCAGTCTAGAAGTGATAATTATTTGGATCGTAATCAATCTGAGTTGCCAAAAGAGAGGCCTTTCGAAGAAACTGGGACTTCTAGTGCACCTAGTTCAACTCAATTTGAACAAAGAAGGGGAGTATGGAGTTACAATACTGAGGAGATTGACCCCTCTGTCATTGATGAGTTACCACCAGAAATTCAACAAGAAGTTCGTGCCTGGCTCAGGCCTCACAAGCGGCAAAATGTAGTGAAACGGGGTTCAAGCATTGCCGATTATTTCTTACCCACAAGGAACGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

724

Amino Acids

80.17

Weight (kDa)

7.9

Isoelectric Point (pI)

53.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMS	PF00817	17 - 222	2.4e-41	impB/mucB/samB family
POLH-Rev1_HhH	PF21704	245 - 300	3.7e-24	DNApol eta/Rev1, HhH motif
IMS_HHH_1	PF21999	263 - 300	4.9e-06	DNA polymerase-iota, thumb domain
IMS_C	PF11799	311 - 438	3.5e-09	impB/mucB/samB family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2042
Acc36I	ACCTGC	2 cut(s)	290, 688
Acc65I	GGTACC	1 cut(s)	869
AccB1I	GGYRCC	2 cut(s)	869, 921
AccB7I	CCANNNNNTGG	1 cut(s)	1580
AccI	GTMKAC	1 cut(s)	51
AccIII	TCCGGA	1 cut(s)	94
AciI	CCGC	1 cut(s)	2107
AclWI	GGATC	2 cut(s)	1805, 1920
AcoI	YGGCCR	2 cut(s)	651, 1719
AcsI	RAATTY	4 cut(s)	237, 611, 1543, 2067
AcuI	CTGAAG	3 cut(s)	426, 1410, 1875
AcvI	CACGTG	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	922
AfaI	GTAC	2 cut(s)	126, 871
AfiI	CCNNNNNNNGG	4 cut(s)	879, 1427, 1580, 2094
AflIII	ACRYGT	2 cut(s)	457, 1840
AhlI	ACTAGT	1 cut(s)	1081
AjnI	CCWGG	6 cut(s)	792, 872, 961, 1557, 1726, 2087
AloI	GAACNNNNNNTCC	2 cut(s)	286, 318
Alw21I	GWGCWC	1 cut(s)	1975
Alw26I	GTCTC	1 cut(s)	599
Alw44I	GTGCAC	1 cut(s)	1971
AlwI	GGATC	2 cut(s)	1805, 1920
Aor13HI	TCCGGA	1 cut(s)	94
AoxI	GGCC	7 cut(s)	174, 651, 1107, 1719, 1882, 1943, 2096
ApaLI	GTGCAC	1 cut(s)	1971
ApeKI	GCWGC	4 cut(s)	386, 1087, 1169, 1208
ApoI	RAATTY	4 cut(s)	237, 611, 1543, 2067
Asp700I	GAANNNNTTC	4 cut(s)	1038, 1133, 1330, 1780
Asp718I	GGTACC	1 cut(s)	869
AspLEI	GCGC	1 cut(s)	924
AspS9I	GGNCC	4 cut(s)	175, 247, 965, 1883
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	2 cut(s)	1462, 1709
AsuII	TTCGAA	1 cut(s)	1950
AvaII	GGWCC	2 cut(s)	247, 965
AxyI	CCTNAGG	2 cut(s)	969, 1157
BaeGI	GKGCMC	1 cut(s)	1975
BaeI	ACNNNNGTAYC	2 cut(s)	1051, 1084
BalI	TGGCCA	2 cut(s)	653, 1721
BanI	GGYRCC	2 cut(s)	869, 921
BanII	GRGCYC	2 cut(s)	471, 568
BbrPI	CACGTG	1 cut(s)	266
BbsI	GAAGAC	5 cut(s)	959, 986, 1031, 1539, 1707
Bbv12I	GWGCWC	1 cut(s)	1975
BbvI	GCAGC	4 cut(s)	398, 1074, 1156, 1195
BccI	CCATC	3 cut(s)	1327, 1372, 1822
BciT130I	CCWGG	6 cut(s)	794, 874, 963, 1559, 1728, 2089
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	599
BcuI	ACTAGT	1 cut(s)	1081
BfaI	CTAG	8 cut(s)	593, 725, 1082, 1515, 1835, 1893, 1968, 1977
BfmI	CTRYAG	2 cut(s)	114, 842
BfoI	RGCGCY	1 cut(s)	925
BfuAI	ACCTGC	2 cut(s)	290, 688
BglII	AGATCT	1 cut(s)	1636
BisI	GCNGC	5 cut(s)	387, 1088, 1170, 1209, 2108
BlsI	GCNGC	5 cut(s)	388, 1089, 1171, 1210, 2109
Bme1390I	CCNGG	7 cut(s)	178, 794, 874, 963, 1559, 1728, 2089
Bme18I	GGWCC	2 cut(s)	247, 965
BmgT120I	GGNCC	4 cut(s)	175, 247, 965, 1883
BmiI	GGNNCC	3 cut(s)	871, 923, 1777
BmrFI	CCNGG	7 cut(s)	178, 794, 874, 963, 1559, 1728, 2089
BmrI	ACTGGG	2 cut(s)	251, 1968
BmsI	GCATC	5 cut(s)	373, 636, 1177, 1531, 1849
BmuI	ACTGGG	2 cut(s)	251, 1968
BpiI	GAAGAC	5 cut(s)	959, 986, 1031, 1539, 1707
BplI	GAGNNNNNCTC	2 cut(s)	1427, 1459
BpmI	CTGGAG	2 cut(s)	399, 1763
Bpu10I	CCTNAGC	1 cut(s)	2093
Bpu14I	TTCGAA	1 cut(s)	1950
BpuEI	CTTGAG	1 cut(s)	434
BpuMI	CCSGG	1 cut(s)	178
BsaAI	YACGTR	2 cut(s)	266, 1217
BsaBI	GATNNNNATC	1 cut(s)	1917
BsaHI	GRCGYC	1 cut(s)	922
BsaJI	CCNNGG	5 cut(s)	793, 940, 1249, 1558, 1574
BsaWI	WCCGGW	2 cut(s)	94, 291
Bsc4I	CCNNNNNNNGG	4 cut(s)	879, 1427, 1580, 2094
Bse1I	ACTGG	8 cut(s)	5, 257, 871, 1007, 1110, 1533, 1746, 1963
Bse21I	CCTNAGG	2 cut(s)	969, 1157
Bse3DI	GCAATG	4 cut(s)	39, 535, 630, 2136
Bse8I	GATNNNNATC	1 cut(s)	1917
BseAI	TCCGGA	1 cut(s)	94
BseBI	CCWGG	6 cut(s)	794, 874, 963, 1559, 1728, 2089
BseDI	CCNNGG	5 cut(s)	793, 940, 1249, 1558, 1574
BseGI	GGATG	3 cut(s)	1060, 1280, 1364
BseJI	GATNNNNATC	1 cut(s)	1917
BseLI	CCNNNNNNNGG	4 cut(s)	879, 1427, 1580, 2094
BseMI	GCAATG	4 cut(s)	39, 535, 630, 2136
BseMII	CTCAG	7 cut(s)	204, 983, 1671, 1901, 1917, 2016, 2107
BseNI	ACTGG	8 cut(s)	5, 257, 871, 1007, 1110, 1533, 1746, 1963
BseRI	GAGGAG	5 cut(s)	402, 452, 1404, 1603, 2042
BseSI	GKGCMC	1 cut(s)	1975
BseXI	GCAGC	4 cut(s)	398, 1074, 1156, 1195
BseYI	CCCAGC	1 cut(s)	769
BsgI	GTGCAG	1 cut(s)	666
BshFI	GGCC	7 cut(s)	176, 653, 1109, 1721, 1884, 1945, 2098
BshNI	GGYRCC	2 cut(s)	869, 921
BsiHKAI	GWGCWC	1 cut(s)	1975
BsiSI	CCGG	3 cut(s)	95, 178, 292
BslFI	GGGAC	3 cut(s)	239, 1137, 1975
BslI	CCNNNNNNNGG	4 cut(s)	879, 1427, 1580, 2094
BsmAI	GTCTC	1 cut(s)	599
BsmFI	GGGAC	3 cut(s)	239, 1137, 1975
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	7 cut(s)	176, 653, 1109, 1721, 1884, 1945, 2098
Bsp119I	TTCGAA	1 cut(s)	1950
Bsp1286I	GDGCHC	3 cut(s)	471, 568, 1975
Bsp13I	TCCGGA	1 cut(s)	94
Bsp143I	GATC	6 cut(s)	535, 1470, 1497, 1636, 1810, 1912
Bsp19I	CCATGG	1 cut(s)	940
BspACI	CCGC	1 cut(s)	2107
BspANI	GGCC	7 cut(s)	176, 653, 1109, 1721, 1884, 1945, 2098
BspCNI	CTCAG	7 cut(s)	205, 982, 1670, 1900, 1918, 2017, 2106
BspEI	TCCGGA	1 cut(s)	94
BspLI	GGNNCC	3 cut(s)	871, 923, 1777
BspMI	ACCTGC	2 cut(s)	290, 688
BspPI	GGATC	2 cut(s)	1805, 1920
BspT104I	TTCGAA	1 cut(s)	1950
BspT107I	GGYRCC	2 cut(s)	869, 921
BsrDI	GCAATG	4 cut(s)	39, 535, 630, 2136
BsrI	ACTGG	8 cut(s)	5, 257, 871, 1007, 1110, 1533, 1746, 1963
BssECI	CCNNGG	5 cut(s)	793, 940, 1249, 1558, 1574
BssMI	GATC	6 cut(s)	535, 1470, 1497, 1636, 1810, 1912
BssNI	GRCGYC	1 cut(s)	922
BssT1I	CCWWGG	3 cut(s)	940, 1249, 1574
Bst2UI	CCWGG	6 cut(s)	794, 874, 963, 1559, 1728, 2089
Bst4CI	ACNGT	4 cut(s)	129, 694, 808, 1762
Bst6I	CTCTTC	2 cut(s)	1375, 1786
BstACI	GRCGYC	1 cut(s)	922
BstBAI	YACGTR	2 cut(s)	266, 1217
BstBI	TTCGAA	1 cut(s)	1950
BstC8I	GCNNGC	3 cut(s)	628, 651, 1092
BstDSI	CCRYGG	1 cut(s)	940
BstENI	CCTNNNNNAGG	1 cut(s)	2092
BstF5I	GGATG	3 cut(s)	1060, 1280, 1364
BstH2I	RGCGCY	1 cut(s)	925
BstHHI	GCGC	1 cut(s)	924
BstKTI	GATC	6 cut(s)	538, 1473, 1500, 1639, 1813, 1915
BstMAI	GTCTC	1 cut(s)	599
BstMBI	GATC	6 cut(s)	535, 1470, 1497, 1636, 1810, 1912
BstMWI	GCNNNNNNNGC	7 cut(s)	202, 563, 632, 659, 1106, 1519, 2104
BstNI	CCWGG	6 cut(s)	794, 874, 963, 1559, 1728, 2089
BstNSI	RCATGY	3 cut(s)	461, 1094, 1844
BstSCI	CCNGG	7 cut(s)	176, 792, 872, 961, 1557, 1726, 2087
BstSFI	CTRYAG	2 cut(s)	114, 842
BstSLI	GKGCMC	1 cut(s)	1975
BstV1I	GCAGC	4 cut(s)	398, 1074, 1156, 1195
BstV2I	GAAGAC	5 cut(s)	959, 986, 1031, 1539, 1707
BstX2I	RGATCY	2 cut(s)	1636, 1810
BstXI	CCANNNNNNTGG	1 cut(s)	947
BstYI	RGATCY	2 cut(s)	1636, 1810
Bsu36I	CCTNAGG	2 cut(s)	969, 1157
BsuRI	GGCC	7 cut(s)	176, 653, 1109, 1721, 1884, 1945, 2098
BtgI	CCRYGG	1 cut(s)	940
BtsCI	GGATG	3 cut(s)	1060, 1280, 1364
BtsI	GCAGTG	1 cut(s)	1868
BtsIMutI	CAGTG	6 cut(s)	12, 804, 1000, 1117, 1767, 1868
BveI	ACCTGC	2 cut(s)	290, 688
Cac8I	GCNNGC	3 cut(s)	628, 651, 1092
CfoI	GCGC	1 cut(s)	924
Cfr13I	GGNCC	4 cut(s)	175, 247, 965, 1883
CsiI	ACCWGGT	1 cut(s)	872
Csp6I	GTAC	2 cut(s)	125, 870
CviAII	CATG	9 cut(s)	47, 55, 138, 397, 458, 941, 1091, 1352, 1841
CviQI	GTAC	2 cut(s)	125, 870
DinI	GGCGCC	1 cut(s)	923
DpnI	GATC	6 cut(s)	537, 1472, 1499, 1638, 1812, 1914
DpnII	GATC	6 cut(s)	535, 1470, 1497, 1636, 1810, 1912
DrdI	GACNNNNNNGTC	1 cut(s)	2042
DseDI	GACNNNNNNGTC	1 cut(s)	2042
EaeI	YGGCCR	2 cut(s)	651, 1719
Eam1104I	CTCTTC	2 cut(s)	1375, 1786
EarI	CTCTTC	2 cut(s)	1375, 1786
Eco130I	CCWWGG	3 cut(s)	940, 1249, 1574
Eco147I	AGGCCT	2 cut(s)	1945, 2098
Eco24I	GRGCYC	2 cut(s)	471, 568
Eco47I	GGWCC	2 cut(s)	247, 965
Eco57I	CTGAAG	3 cut(s)	426, 1410, 1875
Eco72I	CACGTG	1 cut(s)	266
Eco81I	CCTNAGG	2 cut(s)	969, 1157
EcoNI	CCTNNNNNAGG	1 cut(s)	2092
EcoRII	CCWGG	6 cut(s)	792, 872, 961, 1557, 1726, 2087
EcoT14I	CCWWGG	3 cut(s)	940, 1249, 1574
EcoT22I	ATGCAT	1 cut(s)	1102
EcoT38I	GRGCYC	2 cut(s)	471, 568
EgeI	GGCGCC	1 cut(s)	923
EheI	GGCGCC	1 cut(s)	923
ErhI	CCWWGG	3 cut(s)	940, 1249, 1574
FaeI	CATG	9 cut(s)	50, 58, 141, 400, 461, 944, 1094, 1355, 1844
FalI	AAGNNNNNCTT	4 cut(s)	354, 386, 1176, 1208
FaqI	GGGAC	3 cut(s)	239, 1137, 1975
FatI	CATG	9 cut(s)	46, 54, 137, 396, 457, 940, 1090, 1351, 1840
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	5 cut(s)	387, 1088, 1170, 1209, 2108
FokI	GGATG	3 cut(s)	1067, 1267, 1351
FriOI	GRGCYC	2 cut(s)	471, 568
Fsp4HI	GCNGC	5 cut(s)	387, 1088, 1170, 1209, 2108
FspBI	CTAG	8 cut(s)	593, 725, 1082, 1515, 1835, 1893, 1968, 1977
GlaI	GCGC	1 cut(s)	923
GluI	GCNGC	5 cut(s)	387, 1088, 1170, 1209, 2108
GsaI	CCCAGC	1 cut(s)	773
GsuI	CTGGAG	2 cut(s)	399, 1763
HaeII	RGCGCY	1 cut(s)	925
HaeIII	GGCC	7 cut(s)	176, 653, 1109, 1721, 1884, 1945, 2098
HapII	CCGG	3 cut(s)	95, 178, 292
HhaI	GCGC	1 cut(s)	924
Hin1I	GRCGYC	1 cut(s)	922
Hin1II	CATG	9 cut(s)	50, 58, 141, 400, 461, 944, 1094, 1355, 1844
Hin6I	GCGC	1 cut(s)	922
HinP1I	GCGC	1 cut(s)	922
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HindIII	AAGCTT	1 cut(s)	421
HinfI	GANTC	9 cut(s)	29, 36, 215, 728, 1115, 1121, 1406, 1666, 1731
HpaI	GTTAAC	1 cut(s)	802
HpaII	CCGG	3 cut(s)	95, 178, 292
HphI	GGTGA	2 cut(s)	1462, 1709
Hpy166II	GTNNAC	5 cut(s)	52, 802, 1034, 1649, 1973
Hpy188I	TCNGA	8 cut(s)	28, 307, 812, 832, 933, 1120, 1447, 1927
Hpy188III	TCNNGA	8 cut(s)	33, 95, 371, 416, 542, 1323, 1659, 1893
Hpy8I	GTNNAC	5 cut(s)	52, 802, 1034, 1649, 1973
Hpy99I	CGWCG	1 cut(s)	543
HpyAV	CCTTC	7 cut(s)	325, 595, 935, 1149, 1434, 1716, 1995
HpyCH4III	ACNGT	4 cut(s)	129, 694, 808, 1762
HpyCH4IV	ACGT	6 cut(s)	69, 265, 701, 1036, 1066, 1216
HpyF10VI	GCNNNNNNNGC	7 cut(s)	202, 563, 632, 659, 1106, 1519, 2104
HpySE526I	ACGT	6 cut(s)	69, 265, 701, 1036, 1066, 1216
Hsp92I	GRCGYC	1 cut(s)	922
Hsp92II	CATG	9 cut(s)	50, 58, 141, 400, 461, 944, 1094, 1355, 1844
HspAI	GCGC	1 cut(s)	922
KasI	GGCGCC	1 cut(s)	921
Kpn2I	TCCGGA	1 cut(s)	94
KpnI	GGTACC	1 cut(s)	873
KspAI	GTTAAC	1 cut(s)	802
Kzo9I	GATC	6 cut(s)	535, 1470, 1497, 1636, 1810, 1912
LmnI	GCTCC	4 cut(s)	415, 1417, 1616, 1744
Lsp1109I	GCAGC	4 cut(s)	398, 1074, 1156, 1195
LweI	GCATC	5 cut(s)	373, 636, 1177, 1531, 1849
MabI	ACCWGGT	1 cut(s)	872
MaeI	CTAG	8 cut(s)	593, 725, 1082, 1515, 1835, 1893, 1968, 1977
MaeII	ACGT	6 cut(s)	69, 265, 701, 1036, 1066, 1216
MaeIII	GTNAC	5 cut(s)	453, 697, 1476, 2015, 2055
MalI	GATC	6 cut(s)	537, 1472, 1499, 1638, 1812, 1914
MboI	GATC	6 cut(s)	535, 1470, 1497, 1636, 1810, 1912
MfeI	CAATTG	2 cut(s)	354, 1043
MflI	RGATCY	2 cut(s)	1636, 1810
MhlI	GDGCHC	3 cut(s)	471, 568, 1975
MlsI	TGGCCA	2 cut(s)	653, 1721
MluNI	TGGCCA	2 cut(s)	653, 1721
Mly113I	GGCGCC	1 cut(s)	922
MlyI	GAGTC	3 cut(s)	45, 224, 737
MmeI	TCCRAC	1 cut(s)	790
Mox20I	TGGCCA	2 cut(s)	653, 1721
Mph1103I	ATGCAT	1 cut(s)	1102
MroI	TCCGGA	1 cut(s)	94
MroXI	GAANNNNTTC	4 cut(s)	1038, 1133, 1330, 1780
MscI	TGGCCA	2 cut(s)	653, 1721
MseI	TTAA	8 cut(s)	101, 741, 801, 861, 1008, 1194, 1713, 1800
MslI	CAYNNNNRTG	1 cut(s)	1095
Msp20I	TGGCCA	2 cut(s)	653, 1721
MspA1I	CMGCKG	3 cut(s)	119, 244, 626
MspI	CCGG	3 cut(s)	95, 178, 292
MspR9I	CCNGG	7 cut(s)	178, 794, 874, 963, 1559, 1728, 2089
MunI	CAATTG	2 cut(s)	354, 1043
Mva1269I	GAATGC	1 cut(s)	301
MvaI	CCWGG	6 cut(s)	794, 874, 963, 1559, 1728, 2089
MwoI	GCNNNNNNNGC	7 cut(s)	202, 563, 632, 659, 1106, 1519, 2104
NarI	GGCGCC	1 cut(s)	922
NciI	CCSGG	1 cut(s)	178
NcoI	CCATGG	1 cut(s)	940
NdeII	GATC	6 cut(s)	535, 1470, 1497, 1636, 1810, 1912
NlaIII	CATG	9 cut(s)	50, 58, 141, 400, 461, 944, 1094, 1355, 1844
NlaIV	GGNNCC	3 cut(s)	871, 923, 1777
NmuCI	GTSAC	2 cut(s)	453, 697
NsiI	ATGCAT	1 cut(s)	1102
NspI	RCATGY	3 cut(s)	461, 1094, 1844
NspV	TTCGAA	1 cut(s)	1950
PaeI	GCATGC	1 cut(s)	1094
PceI	AGGCCT	2 cut(s)	1945, 2098
PciI	ACATGT	2 cut(s)	457, 1840
PctI	GAATGC	1 cut(s)	301
PdmI	GAANNNNTTC	4 cut(s)	1038, 1133, 1330, 1780
PfeI	GAWTC	6 cut(s)	29, 1115, 1121, 1406, 1666, 1731
PflMI	CCANNNNNTGG	1 cut(s)	1580
PfoI	TCCNGGA	1 cut(s)	961
PkrI	GCNGC	5 cut(s)	388, 1089, 1171, 1210, 2109
PleI	GAGTC	3 cut(s)	44, 223, 736
PluTI	GGCGCC	1 cut(s)	925
PmaCI	CACGTG	1 cut(s)	266
PmlI	CACGTG	1 cut(s)	266
PpsI	GAGTC	3 cut(s)	44, 223, 736
Ppu21I	YACGTR	2 cut(s)	266, 1217
PscI	ACATGT	2 cut(s)	457, 1840
Psp6I	CCWGG	6 cut(s)	792, 872, 961, 1557, 1726, 2087
PspCI	CACGTG	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	769
PspGI	CCWGG	6 cut(s)	792, 872, 961, 1557, 1726, 2087
PspN4I	GGNNCC	3 cut(s)	871, 923, 1777
PspPI	GGNCC	4 cut(s)	175, 247, 965, 1883
PsuI	RGATCY	2 cut(s)	1636, 1810
PvuII	CAGCTG	3 cut(s)	119, 244, 626
RsaI	GTAC	2 cut(s)	126, 871
RsaNI	GTAC	2 cut(s)	125, 870
RseI	CAYNNNNRTG	1 cut(s)	1095
SaqAI	TTAA	8 cut(s)	101, 741, 801, 861, 1008, 1194, 1713, 1800
SatI	GCNGC	5 cut(s)	387, 1088, 1170, 1209, 2108
Sau3AI	GATC	6 cut(s)	535, 1470, 1497, 1636, 1810, 1912
Sau96I	GGNCC	4 cut(s)	175, 247, 965, 1883
SchI	GAGTC	3 cut(s)	45, 224, 737
ScrFI	CCNGG	7 cut(s)	178, 794, 874, 963, 1559, 1728, 2089
SduI	GDGCHC	3 cut(s)	471, 568, 1975
SexAI	ACCWGGT	1 cut(s)	872
SfaNI	GCATC	5 cut(s)	373, 636, 1177, 1531, 1849
SfcI	CTRYAG	2 cut(s)	114, 842
SfoI	GGCGCC	1 cut(s)	923
SfuI	TTCGAA	1 cut(s)	1950
SinI	GGWCC	2 cut(s)	247, 965
SmiMI	CAYNNNNRTG	1 cut(s)	1095
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
SpeI	ACTAGT	1 cut(s)	1081
SphI	GCATGC	1 cut(s)	1094
SseBI	AGGCCT	2 cut(s)	1945, 2098
SsiI	CCGC	1 cut(s)	2107
SspDI	GGCGCC	1 cut(s)	921
SspI	AATATT	2 cut(s)	886, 1788
SspMI	CTAG	8 cut(s)	593, 725, 1082, 1515, 1835, 1893, 1968, 1977
StuI	AGGCCT	2 cut(s)	1945, 2098
StyD4I	CCNGG	7 cut(s)	176, 792, 872, 961, 1557, 1726, 2087
StyI	CCWWGG	3 cut(s)	940, 1249, 1574
TaaI	ACNGT	4 cut(s)	129, 694, 808, 1762
TaiI	ACGT	6 cut(s)	72, 268, 704, 1039, 1069, 1219
TaqI	TCGA	7 cut(s)	32, 337, 471, 1373, 1473, 1525, 1950
TauI	GCSGC	1 cut(s)	2110
TfiI	GAWTC	6 cut(s)	29, 1115, 1121, 1406, 1666, 1731
Tru1I	TTAA	8 cut(s)	101, 741, 801, 861, 1008, 1194, 1713, 1800
Tru9I	TTAA	8 cut(s)	101, 741, 801, 861, 1008, 1194, 1713, 1800
TscAI	CASTG	6 cut(s)	12, 811, 1007, 1117, 1767, 1875
TseFI	GTSAC	2 cut(s)	453, 697
TseI	GCWGC	4 cut(s)	386, 1087, 1169, 1208
Tsp45I	GTSAC	2 cut(s)	453, 697
TspDTI	ATGAA	7 cut(s)	686, 764, 1026, 1071, 1340, 1355, 1697
TspGWI	ACGGA	2 cut(s)	498, 1699
TspRI	CASTG	6 cut(s)	12, 811, 1007, 1117, 1767, 1875
Van91I	CCANNNNNTGG	1 cut(s)	1580
VneI	GTGCAC	1 cut(s)	1971
VpaK11BI	GGWCC	2 cut(s)	247, 965
XagI	CCTNNNNNAGG	1 cut(s)	2092
XapI	RAATTY	4 cut(s)	237, 611, 1543, 2067
XbaI	TCTAGA	1 cut(s)	1892
XceI	RCATGY	3 cut(s)	461, 1094, 1844
XmiI	GTMKAC	1 cut(s)	51
XmnI	GAANNNNTTC	4 cut(s)	1038, 1133, 1330, 1780
XspI	CTAG	8 cut(s)	593, 725, 1082, 1515, 1835, 1893, 1968, 1977
Zsp2I	ATGCAT	1 cut(s)	1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.