Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Forward (+)

28962537 .. 28963038

Gene Structure 502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37819

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGCCAGTGGCAAGGCCTGAAACATCCGATTCCAGAGTCATTGCTCATGTAGGTATGGACTGCTTCTACGTTCAAGTTGTGTTCATTATACTCATAATCTGTGATTGTAGATTGCTATGGACTCTTGTAATTTTTCATTGTTTCTTTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

50

Amino Acids

5.87

Weight (kDa)

5.96

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	74
AoxI	GGCC	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	5
Bse3DI	GCAATG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	23
BseMI	GCAATG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	5
BshFI	GGCC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	12
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	1 cut(s)	16
CviKI_1	RGCY	1 cut(s)	16
Eco147I	AGGCCT	1 cut(s)	16
FaeI	CATG	1 cut(s)	50
FaiI	YATR	5 cut(s)	48, 56, 89, 95, 118
FatI	CATG	1 cut(s)	46
FokI	GGATG	1 cut(s)	10
FspEI	CC	7 cut(s)	18, 30, 36, 40, 41, 46, 103
HaeIII	GGCC	1 cut(s)	16
Hin1II	CATG	1 cut(s)	50
HinfI	GANTC	3 cut(s)	29, 36, 121
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	50
LpnPI	CCDG	3 cut(s)	18, 30, 46
MaeII	ACGT	1 cut(s)	69
MluCI	AATT	1 cut(s)	129
MlyI	GAGTC	2 cut(s)	45, 115
NlaIII	CATG	1 cut(s)	50
PceI	AGGCCT	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	29
PleI	GAGTC	2 cut(s)	44, 115
PpsI	GAGTC	2 cut(s)	44, 115
SchI	GAGTC	2 cut(s)	45, 115
SetI	ASST	2 cut(s)	55, 72
SgeI	CNNG	7 cut(s)	17, 24, 29, 45, 59, 86, 137
Sse9I	AATT	1 cut(s)	129
SseBI	AGGCCT	1 cut(s)	16
StuI	AGGCCT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	72
TasI	AATT	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	29
TscAI	CASTG	1 cut(s)	12
TspDTI	ATGAA	2 cut(s)	73, 125
TspRI	CASTG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.