Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Forward (+)

16241258 .. 16287138

Gene Structure 45881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG154000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGTTAGCTGAAGCTCCTCCAGAAAGCTTGGAAGCAATTGAGGAGGAAGCTCTCAAGTCACATGTTTTGGGACTCGATAATGAGGACGGAAGTGAAGCCAAAGAAAATGTGAGGAAATGGCTTTGCAAAAGCAATGCTGATCGTCGTGATAAGCTATTAGCTTGTGGGGCTCTCATTGTTGCAGAACTTAGGTTGCTAGTGTTGAAGGAGACAGAATTTACTTGTTCAGCTGGCATTGCTCATAACAAGATGCTGGCCAAACTTGCAAGTGGTATGAATAAACCTGCACAACAGACTGTTGTGCCGTTATCATCTGTGAAAGGATTGCTAGAGTCCTTGCCAATTAAGAAAATGAAACAGCTTGGAGGAAAGCTGGGGAGTTCCTTACAAACTGACCTGGGTGTTAACACTGTCGGAGATTTATTGCAGTTTTCAGAGGAAAAGCTACAGCAACGCTACGGAATTAATACTGGCACCTGGTTATGGAACATTGCAAGGGGGATAAGTGGGGAAGAAGTTGAGGGGCGCCTTCTTCCTAAAAGCCATGGTTCTGGGAAGACATTTCCTGGACCTCAGGCTTTGAAGACGATTTCTTCTGTTCAACACTGGCTTAATGAACTTTGTGAAGATTTGAGTGAACGTCTTCAATTGGACTTGGAAGAAAACAAACGTATCGCTCATACACTAGTGCTGCATGGCAACGCATACAAGGCCAGTGATTCAGATTCACAGAAGAAGTTCCCTTCTAAATCTTGTCCCCTTAGGTATGGGGCTGCCAAGATACAAGAAGATGCTCTTAATCTCTTTCAAGCTGCATTACGTGAATACTTGGGTTTATTCACAGCCAAAATCCAAGGAAGTCAAAATAACCAATGGGGAATAACATCCCTCTCTGTTTCAGCAAGTAAAATTGTTCCTATACCATCGGGAACAGCTTCAATTATGAAATACTTTCATGGTCATCAGCCATCCTCTTCGACAAAGCAATCACAGGATAATTTCATTGAAGAATCTGTGCCTCCACCACCTTCAGGTAATGAGAACTACTCGGAGCTGAATGTAAATAAGCCACAGATCGAGTTACCTTGTGAAGAAACTACGATCAAGTATTTTGTGCCTAGTTTGCATCAACTGGAAGACAAAAAAAATTTGTTGAATGACCAGAATCTAATGTGTTCTTTAAAAAATCAAGCACAAGATGAATTCATGCAAGAAAGTTTACCCTTGCCAACCTCAGGGAGTGAACACTTCTCAGGAGTGAATCAAAGTCAGCTAATGAAAAATTCTTCTGGTGAAGACCCTTCCGTTAAATTGGCCATGCCTGGATTCAATAGACTGGAGCAGAAAAGAAAAACAGTGAAAGACAAGGGAACCTCTTCAATATTGAGATTTTTTAAGAACCAAGATCCATCTTCCTCTCCGAAAAAGCTAGAACATGTAGAAAATACTGAAGATGCTAAAGCACTGCTATCTGTTGGCCCTCAGTCTAGAAGTGATAATTATTTGGATCATAATCAATCAGAGTTGCCAAAGGAAAGGCCTTTCGAAGAAACTGGGACTTCTAGCGCACCTAGTTCATCTCAATTTGAACAAAGAAGGGGAGTATGGAGTTACAATACTGACGAGATTGACCCCTCTGTCATTGATGAGTTACCACCAGAAATTCAACAAGAAGTTCGTGCCTGGCTCAGGCCTCACAAGCGGCAAAATGTAGTGAAACGGGGTTCTAGTATTGCCGATTATTTCTTACCCACAAGTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

587

Amino Acids

65.09

Weight (kDa)

6.08

Isoelectric Point (pI)

57.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMS	PF00817	57 - 90	5.2e-06	impB/mucB/samB family
POLH-Rev1_HhH	PF21704	113 - 168	4.1e-24	DNApol eta/Rev1, HhH motif
IMS_HHH_1	PF21999	124 - 168	3.8e-06	DNA polymerase-iota, thumb domain
IMS_C	PF11799	179 - 306	5.7e-09	impB/mucB/samB family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1637
Acc36I	ACCTGC	1 cut(s)	292
AccB1I	GGYRCC	2 cut(s)	473, 525
AciI	CCGC	1 cut(s)	1702
AclWI	GGATC	2 cut(s)	1400, 1515
AcoI	YGGCCR	2 cut(s)	255, 1314
AcsI	RAATTY	5 cut(s)	215, 1147, 1202, 1282, 1662
AcuI	CTGAAG	3 cut(s)	30, 1014, 1470
AcyI	GRCGYC	1 cut(s)	526
AfiI	CCNNNNNNNGG	4 cut(s)	483, 1031, 1235, 1689
AflIII	ACRYGT	2 cut(s)	61, 1435
AhlI	ACTAGT	1 cut(s)	685
AjnI	CCWGG	5 cut(s)	396, 476, 565, 1321, 1682
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	2 cut(s)	1400, 1515
AoxI	GGCC	6 cut(s)	255, 711, 1314, 1477, 1538, 1691
ApeKI	GCWGC	3 cut(s)	691, 773, 812
ApoI	RAATTY	5 cut(s)	215, 1147, 1202, 1282, 1662
AseI	ATTAAT	1 cut(s)	465
Asp700I	GAANNNNTTC	4 cut(s)	642, 737, 934, 1375
AspLEI	GCGC	2 cut(s)	528, 1568
AspS9I	GGNCC	2 cut(s)	569, 1478
AsuHPI	GGTGA	1 cut(s)	1304
AsuII	TTCGAA	1 cut(s)	1545
AvaII	GGWCC	1 cut(s)	569
AxyI	CCTNAGG	3 cut(s)	573, 761, 1234
BaeI	ACNNNNGTAYC	2 cut(s)	655, 688
BalI	TGGCCA	2 cut(s)	257, 1316
BanI	GGYRCC	2 cut(s)	473, 525
BanII	GRGCYC	1 cut(s)	172
BbsI	GAAGAC	5 cut(s)	563, 590, 635, 1143, 1302
BbvI	GCAGC	3 cut(s)	678, 760, 799
BccI	CCATC	3 cut(s)	931, 976, 1417
BceAI	ACGGC	1 cut(s)	289
BciT130I	CCWGG	5 cut(s)	398, 478, 567, 1323, 1684
BcoDI	GTCTC	1 cut(s)	203
BcuI	ACTAGT	1 cut(s)	685
BfaI	CTAG	9 cut(s)	197, 329, 686, 1119, 1430, 1488, 1563, 1572, 1728
BfmI	CTRYAG	1 cut(s)	446
BfoI	RGCGCY	1 cut(s)	529
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	4 cut(s)	692, 774, 813, 1703
BlsI	GCNGC	4 cut(s)	693, 775, 814, 1704
Bme1390I	CCNGG	5 cut(s)	398, 478, 567, 1323, 1684
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	2 cut(s)	569, 1478
BmiI	GGNNCC	3 cut(s)	475, 527, 1372
BmrFI	CCNGG	5 cut(s)	398, 478, 567, 1323, 1684
BmrI	ACTGGG	1 cut(s)	1563
BmsI	GCATC	4 cut(s)	240, 781, 1135, 1444
BmuI	ACTGGG	1 cut(s)	1563
BpiI	GAAGAC	5 cut(s)	563, 590, 635, 1143, 1302
BplI	GAGNNNNNCTC	2 cut(s)	1031, 1063
BpmI	CTGGAG	1 cut(s)	1358
Bpu10I	CCTNAGC	1 cut(s)	1688
Bpu14I	TTCGAA	1 cut(s)	1545
BpuEI	CTTGAG	1 cut(s)	38
BsaAI	YACGTR	1 cut(s)	821
BsaBI	GATNNNNATC	1 cut(s)	1512
BsaHI	GRCGYC	1 cut(s)	526
BsaJI	CCNNGG	3 cut(s)	397, 544, 853
Bsc4I	CCNNNNNNNGG	4 cut(s)	483, 1031, 1235, 1689
Bse1I	ACTGG	6 cut(s)	475, 611, 714, 1137, 1341, 1558
Bse21I	CCTNAGG	3 cut(s)	573, 761, 1234
Bse3DI	GCAATG	3 cut(s)	139, 234, 489
Bse8I	GATNNNNATC	1 cut(s)	1512
BseBI	CCWGG	5 cut(s)	398, 478, 567, 1323, 1684
BseDI	CCNNGG	3 cut(s)	397, 544, 853
BseGI	GGATG	2 cut(s)	884, 968
BseJI	GATNNNNATC	1 cut(s)	1512
BseLI	CCNNNNNNNGG	4 cut(s)	483, 1031, 1235, 1689
BseMI	GCAATG	3 cut(s)	139, 234, 489
BseMII	CTCAG	5 cut(s)	587, 1248, 1266, 1496, 1702
BseNI	ACTGG	6 cut(s)	475, 611, 714, 1137, 1341, 1558
BseRI	GAGGAG	2 cut(s)	6, 56
BseXI	GCAGC	3 cut(s)	678, 760, 799
BseYI	CCCAGC	1 cut(s)	373
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	6 cut(s)	257, 713, 1316, 1479, 1540, 1693
BshNI	GGYRCC	2 cut(s)	473, 525
BslFI	GGGAC	3 cut(s)	84, 741, 1570
BslI	CCNNNNNNNGG	4 cut(s)	483, 1031, 1235, 1689
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	3 cut(s)	84, 741, 1570
BsnI	GGCC	6 cut(s)	257, 713, 1316, 1479, 1540, 1693
Bsp119I	TTCGAA	1 cut(s)	1545
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	5 cut(s)	139, 1074, 1101, 1405, 1507
Bsp19I	CCATGG	1 cut(s)	544
BspACI	CCGC	1 cut(s)	1702
BspANI	GGCC	6 cut(s)	257, 713, 1316, 1479, 1540, 1693
BspCNI	CTCAG	5 cut(s)	586, 1247, 1265, 1495, 1701
BspLI	GGNNCC	3 cut(s)	475, 527, 1372
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	2 cut(s)	1400, 1515
BspT104I	TTCGAA	1 cut(s)	1545
BspT107I	GGYRCC	2 cut(s)	473, 525
BsrDI	GCAATG	3 cut(s)	139, 234, 489
BsrI	ACTGG	6 cut(s)	475, 611, 714, 1137, 1341, 1558
BssECI	CCNNGG	3 cut(s)	397, 544, 853
BssMI	GATC	5 cut(s)	139, 1074, 1101, 1405, 1507
BssNI	GRCGYC	1 cut(s)	526
BssT1I	CCWWGG	2 cut(s)	544, 853
Bst2UI	CCWGG	5 cut(s)	398, 478, 567, 1323, 1684
Bst4CI	ACNGT	3 cut(s)	298, 412, 1357
Bst6I	CTCTTC	2 cut(s)	979, 1381
BstACI	GRCGYC	1 cut(s)	526
BstBAI	YACGTR	1 cut(s)	821
BstBI	TTCGAA	1 cut(s)	1545
BstC8I	GCNNGC	2 cut(s)	232, 255
BstDEI	CTNAG	7 cut(s)	188, 573, 761, 1234, 1252, 1482, 1688
BstDSI	CCRYGG	1 cut(s)	544
BstENI	CCTNNNNNAGG	1 cut(s)	1687
BstF5I	GGATG	2 cut(s)	884, 968
BstH2I	RGCGCY	1 cut(s)	529
BstHHI	GCGC	2 cut(s)	528, 1568
BstKTI	GATC	5 cut(s)	142, 1077, 1104, 1408, 1510
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	5 cut(s)	139, 1074, 1101, 1405, 1507
BstMWI	GCNNNNNNNGC	6 cut(s)	167, 236, 263, 710, 1123, 1699
BstNI	CCWGG	5 cut(s)	398, 478, 567, 1323, 1684
BstNSI	RCATGY	2 cut(s)	65, 1439
BstSCI	CCNGG	5 cut(s)	396, 476, 565, 1321, 1682
BstSFI	CTRYAG	1 cut(s)	446
BstV1I	GCAGC	3 cut(s)	678, 760, 799
BstV2I	GAAGAC	5 cut(s)	563, 590, 635, 1143, 1302
BstX2I	RGATCY	1 cut(s)	1405
BstXI	CCANNNNNNTGG	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	1405
Bsu36I	CCTNAGG	3 cut(s)	573, 761, 1234
BsuRI	GGCC	6 cut(s)	257, 713, 1316, 1479, 1540, 1693
BtgI	CCRYGG	1 cut(s)	544
BtsCI	GGATG	2 cut(s)	884, 968
BtsI	GCAGTG	1 cut(s)	1463
BtsIMutI	CAGTG	5 cut(s)	408, 604, 721, 1362, 1463
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	232, 255
CfoI	GCGC	2 cut(s)	528, 1568
Cfr13I	GGNCC	2 cut(s)	569, 1478
CsiI	ACCWGGT	1 cut(s)	476
CviAII	CATG	7 cut(s)	62, 545, 695, 956, 1207, 1318, 1436
DdeI	CTNAG	7 cut(s)	188, 573, 761, 1234, 1252, 1482, 1688
DinI	GGCGCC	1 cut(s)	527
DpnI	GATC	5 cut(s)	141, 1076, 1103, 1407, 1509
DpnII	GATC	5 cut(s)	139, 1074, 1101, 1405, 1507
DraI	TTTAAA	1 cut(s)	1182
DrdI	GACNNNNNNGTC	1 cut(s)	1637
DseDI	GACNNNNNNGTC	1 cut(s)	1637
EaeI	YGGCCR	2 cut(s)	255, 1314
Eam1104I	CTCTTC	2 cut(s)	979, 1381
EarI	CTCTTC	2 cut(s)	979, 1381
Eco130I	CCWWGG	2 cut(s)	544, 853
Eco147I	AGGCCT	2 cut(s)	1540, 1693
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	569
Eco57I	CTGAAG	3 cut(s)	30, 1014, 1470
Eco81I	CCTNAGG	3 cut(s)	573, 761, 1234
EcoNI	CCTNNNNNAGG	1 cut(s)	1687
EcoRI	GAATTC	1 cut(s)	1202
EcoRII	CCWGG	5 cut(s)	396, 476, 565, 1321, 1682
EcoT14I	CCWWGG	2 cut(s)	544, 853
EcoT38I	GRGCYC	1 cut(s)	172
EgeI	GGCGCC	1 cut(s)	527
EheI	GGCGCC	1 cut(s)	527
ErhI	CCWWGG	2 cut(s)	544, 853
FaeI	CATG	7 cut(s)	65, 548, 698, 959, 1210, 1321, 1439
FalI	AAGNNNNNCTT	2 cut(s)	780, 812
FaqI	GGGAC	3 cut(s)	84, 741, 1570
FatI	CATG	7 cut(s)	61, 544, 694, 955, 1206, 1317, 1435
Fnu4HI	GCNGC	4 cut(s)	692, 774, 813, 1703
FokI	GGATG	2 cut(s)	871, 955
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	4 cut(s)	692, 774, 813, 1703
FspBI	CTAG	9 cut(s)	197, 329, 686, 1119, 1430, 1488, 1563, 1572, 1728
GlaI	GCGC	2 cut(s)	527, 1567
GluI	GCNGC	4 cut(s)	692, 774, 813, 1703
GsaI	CCCAGC	1 cut(s)	377
GsuI	CTGGAG	1 cut(s)	1358
HaeII	RGCGCY	1 cut(s)	529
HaeIII	GGCC	6 cut(s)	257, 713, 1316, 1479, 1540, 1693
HhaI	GCGC	2 cut(s)	528, 1568
Hin1I	GRCGYC	1 cut(s)	526
Hin1II	CATG	7 cut(s)	65, 548, 698, 959, 1210, 1321, 1439
Hin6I	GCGC	2 cut(s)	526, 1566
HinP1I	GCGC	2 cut(s)	526, 1566
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	25
HinfI	GANTC	8 cut(s)	72, 332, 719, 725, 1010, 1165, 1261, 1326
HpaI	GTTAAC	1 cut(s)	406
HphI	GGTGA	1 cut(s)	1304
Hpy166II	GTNNAC	4 cut(s)	406, 638, 1220, 1244
Hpy188I	TCNGA	6 cut(s)	416, 436, 724, 1051, 1422, 1522
Hpy188III	TCNNGA	5 cut(s)	20, 146, 927, 1254, 1488
Hpy8I	GTNNAC	4 cut(s)	406, 638, 1220, 1244
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	6 cut(s)	199, 539, 753, 1038, 1311, 1590
HpyCH4III	ACNGT	3 cut(s)	298, 412, 1357
HpyCH4IV	ACGT	3 cut(s)	640, 670, 820
HpyF10VI	GCNNNNNNNGC	6 cut(s)	167, 236, 263, 710, 1123, 1699
HpyF3I	CTNAG	7 cut(s)	188, 573, 761, 1234, 1252, 1482, 1688
HpySE526I	ACGT	3 cut(s)	640, 670, 820
Hsp92I	GRCGYC	1 cut(s)	526
Hsp92II	CATG	7 cut(s)	65, 548, 698, 959, 1210, 1321, 1439
HspAI	GCGC	2 cut(s)	526, 1566
KasI	GGCGCC	1 cut(s)	525
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	5 cut(s)	139, 1074, 1101, 1405, 1507
LmnI	GCTCC	3 cut(s)	19, 1051, 1339
Lsp1109I	GCAGC	3 cut(s)	678, 760, 799
LweI	GCATC	4 cut(s)	240, 781, 1135, 1444
MabI	ACCWGGT	1 cut(s)	476
MaeI	CTAG	9 cut(s)	197, 329, 686, 1119, 1430, 1488, 1563, 1572, 1728
MaeII	ACGT	3 cut(s)	640, 670, 820
MaeIII	GTNAC	4 cut(s)	57, 1080, 1610, 1650
MalI	GATC	5 cut(s)	141, 1076, 1103, 1407, 1509
MboI	GATC	5 cut(s)	139, 1074, 1101, 1405, 1507
MfeI	CAATTG	2 cut(s)	36, 647
MflI	RGATCY	1 cut(s)	1405
MhlI	GDGCHC	1 cut(s)	172
MlsI	TGGCCA	2 cut(s)	257, 1316
MluNI	TGGCCA	2 cut(s)	257, 1316
Mly113I	GGCGCC	1 cut(s)	526
MlyI	GAGTC	2 cut(s)	66, 341
MmeI	TCCRAC	1 cut(s)	394
Mox20I	TGGCCA	2 cut(s)	257, 1316
MroXI	GAANNNNTTC	4 cut(s)	642, 737, 934, 1375
MscI	TGGCCA	2 cut(s)	257, 1316
MseI	TTAA	8 cut(s)	345, 405, 465, 612, 798, 1181, 1308, 1395
Msp20I	TGGCCA	2 cut(s)	257, 1316
MspA1I	CMGCKG	1 cut(s)	230
MspR9I	CCNGG	5 cut(s)	398, 478, 567, 1323, 1684
MunI	CAATTG	2 cut(s)	36, 647
MvaI	CCWGG	5 cut(s)	398, 478, 567, 1323, 1684
MwoI	GCNNNNNNNGC	6 cut(s)	167, 236, 263, 710, 1123, 1699
NarI	GGCGCC	1 cut(s)	526
NcoI	CCATGG	1 cut(s)	544
NdeII	GATC	5 cut(s)	139, 1074, 1101, 1405, 1507
NlaIII	CATG	7 cut(s)	65, 548, 698, 959, 1210, 1321, 1439
NlaIV	GGNNCC	3 cut(s)	475, 527, 1372
NmuCI	GTSAC	1 cut(s)	57
NspI	RCATGY	2 cut(s)	65, 1439
NspV	TTCGAA	1 cut(s)	1545
PceI	AGGCCT	2 cut(s)	1540, 1693
PciI	ACATGT	2 cut(s)	61, 1435
PdmI	GAANNNNTTC	4 cut(s)	642, 737, 934, 1375
PfeI	GAWTC	6 cut(s)	719, 725, 1010, 1165, 1261, 1326
PfoI	TCCNGGA	1 cut(s)	565
PkrI	GCNGC	4 cut(s)	693, 775, 814, 1704
PleI	GAGTC	2 cut(s)	66, 340
PluTI	GGCGCC	1 cut(s)	529
PpsI	GAGTC	2 cut(s)	66, 340
Ppu21I	YACGTR	1 cut(s)	821
PscI	ACATGT	2 cut(s)	61, 1435
PshBI	ATTAAT	1 cut(s)	465
Psp6I	CCWGG	5 cut(s)	396, 476, 565, 1321, 1682
PspFI	CCCAGC	1 cut(s)	373
PspGI	CCWGG	5 cut(s)	396, 476, 565, 1321, 1682
PspN4I	GGNNCC	3 cut(s)	475, 527, 1372
PspPI	GGNCC	2 cut(s)	569, 1478
PsuI	RGATCY	1 cut(s)	1405
PvuII	CAGCTG	1 cut(s)	230
SaqAI	TTAA	8 cut(s)	345, 405, 465, 612, 798, 1181, 1308, 1395
SatI	GCNGC	4 cut(s)	692, 774, 813, 1703
Sau3AI	GATC	5 cut(s)	139, 1074, 1101, 1405, 1507
Sau96I	GGNCC	2 cut(s)	569, 1478
SchI	GAGTC	2 cut(s)	66, 341
ScrFI	CCNGG	5 cut(s)	398, 478, 567, 1323, 1684
SduI	GDGCHC	1 cut(s)	172
SexAI	ACCWGGT	1 cut(s)	476
SfaNI	GCATC	4 cut(s)	240, 781, 1135, 1444
SfcI	CTRYAG	1 cut(s)	446
SfoI	GGCGCC	1 cut(s)	527
SfuI	TTCGAA	1 cut(s)	1545
SinI	GGWCC	1 cut(s)	569
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SpeI	ACTAGT	1 cut(s)	685
SseBI	AGGCCT	2 cut(s)	1540, 1693
SsiI	CCGC	1 cut(s)	1702
SspDI	GGCGCC	1 cut(s)	525
SspI	AATATT	1 cut(s)	1383
SspMI	CTAG	9 cut(s)	197, 329, 686, 1119, 1430, 1488, 1563, 1572, 1728
StuI	AGGCCT	2 cut(s)	1540, 1693
StyD4I	CCNGG	5 cut(s)	396, 476, 565, 1321, 1682
StyI	CCWWGG	2 cut(s)	544, 853
TaaI	ACNGT	3 cut(s)	298, 412, 1357
TaiI	ACGT	3 cut(s)	643, 673, 823
TaqI	TCGA	4 cut(s)	75, 977, 1077, 1545
TauI	GCSGC	1 cut(s)	1705
TfiI	GAWTC	6 cut(s)	719, 725, 1010, 1165, 1261, 1326
Tru1I	TTAA	8 cut(s)	345, 405, 465, 612, 798, 1181, 1308, 1395
Tru9I	TTAA	8 cut(s)	345, 405, 465, 612, 798, 1181, 1308, 1395
TscAI	CASTG	5 cut(s)	415, 611, 721, 1362, 1470
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	3 cut(s)	691, 773, 812
Tsp45I	GTSAC	1 cut(s)	57
TspGWI	ACGGA	3 cut(s)	102, 474, 1294
TspRI	CASTG	5 cut(s)	415, 611, 721, 1362, 1470
VpaK11BI	GGWCC	1 cut(s)	569
VspI	ATTAAT	1 cut(s)	465
XagI	CCTNNNNNAGG	1 cut(s)	1687
XapI	RAATTY	5 cut(s)	215, 1147, 1202, 1282, 1662
XbaI	TCTAGA	1 cut(s)	1487
XceI	RCATGY	2 cut(s)	65, 1439
XmnI	GAANNNNTTC	4 cut(s)	642, 737, 934, 1375
XspI	CTAG	9 cut(s)	197, 329, 686, 1119, 1430, 1488, 1563, 1572, 1728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.