Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012431.1

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Forward (+)

13049 .. 15201

Gene Structure 2153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012431.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgaaatactttcatggtcatcagccatcctcttcgacaaagcaatcacaggataatttcattgaagaatctgtgcctccaccaccttcaggtaatgagaactactcggagctgaatgtaaataagccacagatcgagttaccttgtgaagaaactacgatcaagtattttgtgcctagtttgcttcaactggaagacaaaaaaaatttgttgaatgaccagaatctaatgtgttctttaaaaaatcaagcacaagatgaattcatgcaagaaagtttacccttgccaacctcagggagtgaacacttctcaggagtgaatcaaagtcagctaatgaaaaattcttctggtgaagacccttcagttaaattggccatgcctggattcaatagactggagcagaaaagaaaaacagtgaaagacaagggaacctcttcaatattgagattttttaagaaccaagatccatcttcctctctgaaaaagctagaacatgtagaaaatactgaagatgctaaagcactgctatctgttggctctcagtctagaagtgataattatttggatcataatcaatcagagttgccaaaagaaaggcctttcgaagaaactgggacttctagcgcacctagttcatctcaatttgaacaaagaaggggagtatggagttacaatactgacgagattgacccctctgtcattgatgagttaccaccagaaattcaacaagaagttcgtgcctggctcaggcctcacaagcggcaaaatgtagcgaaacggggttctagtattgccgattatttcttacccacaagtctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

273

Amino Acids

30.9

Weight (kDa)

5.38

Isoelectric Point (pI)

71.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	695
AciI	CCGC	1 cut(s)	760
AclWI	GGATC	2 cut(s)	458, 573
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	4 cut(s)	205, 260, 340, 720
AcuI	CTGAAG	3 cut(s)	72, 345, 528
AfiI	CCNNNNNNNGG	3 cut(s)	89, 293, 747
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	7 cut(s)	65, 188, 214, 388, 438, 647, 725
AjnI	CCWGG	2 cut(s)	379, 740
AluBI	AGCT	3 cut(s)	112, 331, 487
AluI	AGCT	3 cut(s)	112, 331, 487
AlwI	GGATC	2 cut(s)	458, 573
AoxI	GGCC	3 cut(s)	372, 596, 749
ApoI	RAATTY	4 cut(s)	205, 260, 340, 720
Asp700I	GAANNNNTTC	1 cut(s)	433
AspLEI	GCGC	1 cut(s)	626
AsuHPI	GGTGA	1 cut(s)	362
AsuII	TTCGAA	1 cut(s)	603
AxyI	CCTNAGG	1 cut(s)	292
BalI	TGGCCA	1 cut(s)	374
BbsI	GAAGAC	2 cut(s)	201, 360
BccI	CCATC	2 cut(s)	34, 475
BciT130I	CCWGG	2 cut(s)	381, 742
BfaI	CTAG	6 cut(s)	177, 488, 546, 621, 630, 786
BisI	GCNGC	1 cut(s)	761
BlsI	GCNGC	1 cut(s)	762
Bme1390I	CCNGG	2 cut(s)	381, 742
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	2 cut(s)	381, 742
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	1 cut(s)	502
BmuI	ACTGGG	1 cut(s)	621
BpiI	GAAGAC	2 cut(s)	201, 360
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpmI	CTGGAG	1 cut(s)	416
Bpu10I	CCTNAGC	1 cut(s)	746
Bpu14I	TTCGAA	1 cut(s)	603
BsaBI	GATNNNNATC	1 cut(s)	570
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 293, 747
Bse1I	ACTGG	3 cut(s)	195, 399, 616
Bse21I	CCTNAGG	1 cut(s)	292
Bse8I	GATNNNNATC	1 cut(s)	570
BseBI	CCWGG	2 cut(s)	381, 742
BseGI	GGATG	1 cut(s)	26
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	3 cut(s)	89, 293, 747
BseMII	CTCAG	4 cut(s)	306, 324, 554, 760
BseNI	ACTGG	3 cut(s)	195, 399, 616
BshFI	GGCC	3 cut(s)	374, 598, 751
BslFI	GGGAC	1 cut(s)	628
BslI	CCNNNNNNNGG	3 cut(s)	89, 293, 747
BsmFI	GGGAC	1 cut(s)	628
BsnI	GGCC	3 cut(s)	374, 598, 751
Bsp119I	TTCGAA	1 cut(s)	603
Bsp143I	GATC	4 cut(s)	132, 159, 463, 565
BspACI	CCGC	1 cut(s)	760
BspANI	GGCC	3 cut(s)	374, 598, 751
BspCNI	CTCAG	4 cut(s)	305, 323, 553, 759
BspLI	GGNNCC	1 cut(s)	430
BspPI	GGATC	2 cut(s)	458, 573
BspT104I	TTCGAA	1 cut(s)	603
BsrI	ACTGG	3 cut(s)	195, 399, 616
BssMI	GATC	4 cut(s)	132, 159, 463, 565
Bst2UI	CCWGG	2 cut(s)	381, 742
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	2 cut(s)	37, 439
BstBI	TTCGAA	1 cut(s)	603
BstDEI	CTNAG	4 cut(s)	292, 310, 540, 746
BstENI	CCTNNNNNAGG	1 cut(s)	745
BstF5I	GGATG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	626
BstKTI	GATC	4 cut(s)	135, 162, 466, 568
BstMBI	GATC	4 cut(s)	132, 159, 463, 565
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 757
BstNI	CCWGG	2 cut(s)	381, 742
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	2 cut(s)	379, 740
BstV2I	GAAGAC	2 cut(s)	201, 360
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
Bsu36I	CCTNAGG	1 cut(s)	292
BsuRI	GGCC	3 cut(s)	374, 598, 751
BtsCI	GGATG	1 cut(s)	26
BtsI	GCAGTG	1 cut(s)	521
BtsIMutI	CAGTG	2 cut(s)	420, 521
CfoI	GCGC	1 cut(s)	626
CviAII	CATG	4 cut(s)	14, 265, 376, 494
DdeI	CTNAG	4 cut(s)	292, 310, 540, 746
DpnI	GATC	4 cut(s)	134, 161, 465, 567
DpnII	GATC	4 cut(s)	132, 159, 463, 565
DraI	TTTAAA	1 cut(s)	240
DrdI	GACNNNNNNGTC	1 cut(s)	695
DseDI	GACNNNNNNGTC	1 cut(s)	695
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	37, 439
EarI	CTCTTC	2 cut(s)	37, 439
Eco147I	AGGCCT	2 cut(s)	598, 751
Eco57I	CTGAAG	3 cut(s)	72, 345, 528
Eco81I	CCTNAGG	1 cut(s)	292
EcoNI	CCTNNNNNAGG	1 cut(s)	745
EcoRI	GAATTC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	379, 740
FaeI	CATG	4 cut(s)	17, 268, 379, 497
FaiI	YATR	7 cut(s)	15, 266, 377, 495, 570, 664, 820
FaqI	GGGAC	1 cut(s)	628
FatI	CATG	4 cut(s)	13, 264, 375, 493
Fnu4HI	GCNGC	1 cut(s)	761
FokI	GGATG	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	761
FspBI	CTAG	6 cut(s)	177, 488, 546, 621, 630, 786
GlaI	GCGC	1 cut(s)	625
GluI	GCNGC	1 cut(s)	761
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	3 cut(s)	374, 598, 751
HhaI	GCGC	1 cut(s)	626
Hin1II	CATG	4 cut(s)	17, 268, 379, 497
Hin6I	GCGC	1 cut(s)	624
HinP1I	GCGC	1 cut(s)	624
HinfI	GANTC	4 cut(s)	68, 223, 319, 384
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	2 cut(s)	278, 302
Hpy188I	TCNGA	3 cut(s)	109, 480, 580
Hpy188III	TCNNGA	2 cut(s)	312, 546
Hpy8I	GTNNAC	2 cut(s)	278, 302
HpyAV	CCTTC	3 cut(s)	96, 369, 648
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4V	TGCA	1 cut(s)	268
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 757
HpyF3I	CTNAG	4 cut(s)	292, 310, 540, 746
Hsp92II	CATG	4 cut(s)	17, 268, 379, 497
HspAI	GCGC	1 cut(s)	624
Kzo9I	GATC	4 cut(s)	132, 159, 463, 565
LmnI	GCTCC	2 cut(s)	109, 397
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	6 cut(s)	177, 488, 546, 621, 630, 786
MaeIII	GTNAC	3 cut(s)	138, 668, 708
MalI	GATC	4 cut(s)	134, 161, 465, 567
MboI	GATC	4 cut(s)	132, 159, 463, 565
MflI	RGATCY	1 cut(s)	463
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	8 cut(s)	55, 205, 260, 340, 368, 556, 641, 720
MluNI	TGGCCA	1 cut(s)	374
MnlI	CCTC	7 cut(s)	40, 87, 301, 442, 484, 703, 762
Mox20I	TGGCCA	1 cut(s)	374
MroXI	GAANNNNTTC	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	3 cut(s)	239, 366, 453
Msp20I	TGGCCA	1 cut(s)	374
MspR9I	CCNGG	2 cut(s)	381, 742
MvaI	CCWGG	2 cut(s)	381, 742
MwoI	GCNNNNNNNGC	2 cut(s)	181, 757
NdeII	GATC	4 cut(s)	132, 159, 463, 565
NlaIII	CATG	4 cut(s)	17, 268, 379, 497
NlaIV	GGNNCC	1 cut(s)	430
NspI	RCATGY	1 cut(s)	497
NspV	TTCGAA	1 cut(s)	603
PceI	AGGCCT	2 cut(s)	598, 751
PciI	ACATGT	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	4 cut(s)	68, 223, 319, 384
PkrI	GCNGC	1 cut(s)	762
PscI	ACATGT	1 cut(s)	493
Psp6I	CCWGG	2 cut(s)	379, 740
PspGI	CCWGG	2 cut(s)	379, 740
PspN4I	GGNNCC	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	463
SaqAI	TTAA	3 cut(s)	239, 366, 453
SatI	GCNGC	1 cut(s)	761
Sau3AI	GATC	4 cut(s)	132, 159, 463, 565
ScrFI	CCNGG	2 cut(s)	381, 742
SetI	ASST	9 cut(s)	88, 94, 114, 145, 293, 333, 434, 489, 631
SfaNI	GCATC	1 cut(s)	502
SfuI	TTCGAA	1 cut(s)	603
Sse9I	AATT	8 cut(s)	55, 205, 260, 340, 368, 556, 641, 720
SseBI	AGGCCT	2 cut(s)	598, 751
SsiI	CCGC	1 cut(s)	760
SspI	AATATT	1 cut(s)	441
SspMI	CTAG	6 cut(s)	177, 488, 546, 621, 630, 786
StuI	AGGCCT	2 cut(s)	598, 751
StyD4I	CCNGG	2 cut(s)	379, 740
TaaI	ACNGT	1 cut(s)	415
TaqI	TCGA	3 cut(s)	35, 135, 603
TasI	AATT	8 cut(s)	55, 205, 260, 340, 368, 556, 641, 720
TauI	GCSGC	1 cut(s)	763
TfiI	GAWTC	4 cut(s)	68, 223, 319, 384
Tru1I	TTAA	3 cut(s)	239, 366, 453
Tru9I	TTAA	3 cut(s)	239, 366, 453
TscAI	CASTG	2 cut(s)	420, 528
TspDTI	ATGAA	6 cut(s)	17, 49, 253, 273, 350, 624
TspRI	CASTG	2 cut(s)	420, 528
XagI	CCTNNNNNAGG	1 cut(s)	745
XapI	RAATTY	4 cut(s)	205, 260, 340, 720
XbaI	TCTAGA	1 cut(s)	545
XceI	RCATGY	1 cut(s)	497
XmnI	GAANNNNTTC	1 cut(s)	433
XspI	CTAG	6 cut(s)	177, 488, 546, 621, 630, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.