Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Forward (+)

15368814 .. 15372418

Gene Structure 3605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30118

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGCTGCTTCTACGTTCAAGTGGAGCAAAGGAAAAATCCGGAGTTAAGGGGCTTACCTATGGCTGTGGTACAGTATAACTCATGGCAAGGTGGGCGTTTGATTGCTGTCAGCTATGAGGCCCAGAGATGCGGTGTGAAACATTCTATGCGAGGTGCTGAATCAAAGCAAGTCTGCCCACAAATTCAGCTGGTCCAAGTCCCAGTAGCACGGGGTAAAGCTGACCTGAACTCATACTGGAGTGCAGGTTCAGAGGTCTCTAGTGTGGTTTCTATTCTATCAAGGAAGGGTCGATGCGAAAGGGCTTCAATTGACGAAGTGTATCTTGACCTTACTGATGCAGCAGAGACCATGTTAGCTGAAGCTCCTCCAGAAAGGTTGGAAGCGATTGAGGAGGAAGCTCTCAAGTCACATGTTTTGGGGCTTGATAACGAGGACAGAAGTGAAGCCAAAGAAAATGTGAGGAGATTGCTCTGCAAAAGCAATGCTGATCGCCGTGATAAGCTGCTAGCTTGTGGGGCTCTCATTGTTGCAGAACTTGGATTGCTAGTGTTGAAGGAGACAGAATTTACTTGTTCAGCTGGCATTGCTCATAATAAGATGCTGGCCAAACTTGCAAGTGGTATGAATAAACCCGCACAACAAACTGTTGTGCCATTGTCATCTGTGAAAGGATTGCTAGAGTCCTTGCCGATTAGGAAAATGAAACAGCTTGGAGGAGAGCTGGGGAGTAGTTTACAAAGTGATCTGGGTGTTAACACTGTTGGAGATTTATTGCAGTTTTCAGAGGAAAAGCTACAAGAACACTATGGAATCAATACTGGGGGGATAAGTGGGGAAGAAGTTGAGGGGCGCCTTCTTCCGAAGAGCTATGGTCCTGGGAAGACATTTCCTGGACCTCAGGCTTTGAAGACGATTTCTTCTTTAAGTTCAGCACTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

314

Amino Acids

33.97

Weight (kDa)

6.48

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMS	PF00817	1 - 207	4.2e-34	impB/mucB/samB family
POLH-Rev1_HhH	PF21704	230 - 275	1.9e-15	DNApol eta/Rev1, HhH motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	852
AccIII	TCCGGA	1 cut(s)	40
AciI	CCGC	2 cut(s)	132, 636
AcoI	YGGCCR	1 cut(s)	606
AcsI	RAATTY	2 cut(s)	183, 566
AcuI	CTGAAG	1 cut(s)	381
AcyI	GRCGYC	1 cut(s)	853
AfaI	GTAC	1 cut(s)	72
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	4 cut(s)	20, 309, 556, 910
AjnI	CCWGG	2 cut(s)	877, 892
AloI	GAACNNNNNNTCC	2 cut(s)	232, 264
Alw26I	GTCTC	3 cut(s)	262, 341, 554
Aor13HI	TCCGGA	1 cut(s)	40
AoxI	GGCC	2 cut(s)	120, 606
ApeKI	GCWGC	3 cut(s)	6, 341, 505
ApoI	RAATTY	2 cut(s)	183, 566
AspLEI	GCGC	1 cut(s)	855
AspS9I	GGNCC	4 cut(s)	121, 193, 875, 896
AsuNHI	GCTAGC	1 cut(s)	508
AvaII	GGWCC	3 cut(s)	193, 875, 896
AxyI	CCTNAGG	1 cut(s)	900
BalI	TGGCCA	1 cut(s)	608
BanI	GGYRCC	1 cut(s)	852
BanII	GRGCYC	1 cut(s)	523
BbsI	GAAGAC	2 cut(s)	890, 917
BbvI	GCAGC	2 cut(s)	353, 492
BceAI	ACGGC	1 cut(s)	480
BciT130I	CCWGG	2 cut(s)	879, 894
BcoDI	GTCTC	3 cut(s)	262, 341, 554
BfaI	CTAG	4 cut(s)	261, 509, 548, 680
BfoI	RGCGCY	1 cut(s)	856
BfuAI	ACCTGC	1 cut(s)	236
BisI	GCNGC	3 cut(s)	7, 342, 506
BlsI	GCNGC	3 cut(s)	8, 343, 507
Bme1390I	CCNGG	2 cut(s)	879, 894
Bme18I	GGWCC	3 cut(s)	193, 875, 896
BmgT120I	GGNCC	4 cut(s)	121, 193, 875, 896
BmiI	GGNNCC	1 cut(s)	854
BmrFI	CCNGG	2 cut(s)	879, 894
BmrI	ACTGGG	2 cut(s)	197, 831
BmsI	GCATC	4 cut(s)	119, 284, 328, 591
BmtI	GCTAGC	1 cut(s)	512
BmuI	ACTGGG	2 cut(s)	197, 831
BpiI	GAAGAC	2 cut(s)	890, 917
BpmI	CTGGAG	2 cut(s)	259, 354
BpuEI	CTTGAG	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	853
BsaI	GGTCTC	2 cut(s)	262, 341
BsaJI	CCNNGG	1 cut(s)	878
BsaWI	WCCGGW	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bse1I	ACTGG	3 cut(s)	203, 242, 826
Bse21I	CCTNAGG	1 cut(s)	900
Bse3DI	GCAATG	2 cut(s)	490, 585
BseAI	TCCGGA	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	879, 894
BseDI	CCNNGG	1 cut(s)	878
BseMI	GCAATG	2 cut(s)	490, 585
BseMII	CTCAG	1 cut(s)	914
BseNI	ACTGG	3 cut(s)	203, 242, 826
BseRI	GAGGAG	4 cut(s)	357, 407, 478, 732
BseXI	GCAGC	2 cut(s)	353, 492
BseYI	CCCAGC	1 cut(s)	724
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	2 cut(s)	122, 608
BshNI	GGYRCC	1 cut(s)	852
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	185
BsmAI	GTCTC	3 cut(s)	262, 341, 554
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	122, 608
Bso31I	GGTCTC	2 cut(s)	262, 341
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp13I	TCCGGA	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	490, 745
BspACI	CCGC	2 cut(s)	132, 636
BspANI	GGCC	2 cut(s)	122, 608
BspCNI	CTCAG	1 cut(s)	913
BspEI	TCCGGA	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	854
BspMI	ACCTGC	1 cut(s)	236
BspOI	GCTAGC	1 cut(s)	512
BspQI	GCTCTTC	1 cut(s)	860
BspT107I	GGYRCC	1 cut(s)	852
BspTNI	GGTCTC	2 cut(s)	262, 341
BsrDI	GCAATG	2 cut(s)	490, 585
BsrI	ACTGG	3 cut(s)	203, 242, 826
BssECI	CCNNGG	1 cut(s)	878
BssMI	GATC	2 cut(s)	490, 745
BssNI	GRCGYC	1 cut(s)	853
Bst2UI	CCWGG	2 cut(s)	879, 894
Bst4CI	ACNGT	3 cut(s)	75, 649, 763
Bst6I	CTCTTC	1 cut(s)	860
BstACI	GRCGYC	1 cut(s)	853
BstC8I	GCNNGC	3 cut(s)	510, 583, 606
BstDEI	CTNAG	1 cut(s)	900
BstH2I	RGCGCY	1 cut(s)	856
BstHHI	GCGC	1 cut(s)	855
BstKTI	GATC	2 cut(s)	493, 748
BstMAI	GTCTC	3 cut(s)	262, 341, 554
BstMBI	GATC	2 cut(s)	490, 745
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 518, 587, 614
BstNI	CCWGG	2 cut(s)	879, 894
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	877, 892
BstV1I	GCAGC	2 cut(s)	353, 492
BstV2I	GAAGAC	2 cut(s)	890, 917
Bsu36I	CCTNAGG	1 cut(s)	900
BsuRI	GGCC	2 cut(s)	122, 608
BtsIMutI	CAGTG	2 cut(s)	759, 935
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	3 cut(s)	510, 583, 606
CfoI	GCGC	1 cut(s)	855
Cfr13I	GGNCC	4 cut(s)	121, 193, 875, 896
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	3 cut(s)	84, 352, 413
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	1 cut(s)	900
DinI	GGCGCC	1 cut(s)	854
DpnI	GATC	2 cut(s)	492, 747
DpnII	GATC	2 cut(s)	490, 745
EaeI	YGGCCR	1 cut(s)	606
Eam1104I	CTCTTC	1 cut(s)	860
EarI	CTCTTC	1 cut(s)	860
Eco24I	GRGCYC	1 cut(s)	523
Eco31I	GGTCTC	2 cut(s)	262, 341
Eco47I	GGWCC	3 cut(s)	193, 875, 896
Eco57I	CTGAAG	1 cut(s)	381
Eco81I	CCTNAGG	1 cut(s)	900
EcoRII	CCWGG	2 cut(s)	877, 892
EcoT38I	GRGCYC	1 cut(s)	523
EgeI	GGCGCC	1 cut(s)	854
EheI	GGCGCC	1 cut(s)	854
FaeI	CATG	3 cut(s)	87, 355, 416
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	3 cut(s)	83, 351, 412
FauI	CCCGC	1 cut(s)	643
Fnu4HI	GCNGC	3 cut(s)	7, 342, 506
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	3 cut(s)	7, 342, 506
FspBI	CTAG	4 cut(s)	261, 509, 548, 680
GlaI	GCGC	1 cut(s)	854
GluI	GCNGC	3 cut(s)	7, 342, 506
GsaI	CCCAGC	1 cut(s)	728
GsuI	CTGGAG	2 cut(s)	259, 354
HaeII	RGCGCY	1 cut(s)	856
HaeIII	GGCC	2 cut(s)	122, 608
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	1 cut(s)	855
Hin1I	GRCGYC	1 cut(s)	853
Hin1II	CATG	3 cut(s)	87, 355, 416
Hin6I	GCGC	1 cut(s)	853
HinP1I	GCGC	1 cut(s)	853
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HinfI	GANTC	3 cut(s)	161, 683, 813
HpaI	GTTAAC	1 cut(s)	757
HpaII	CCGG	1 cut(s)	41
Hpy166II	GTNNAC	2 cut(s)	737, 757
Hpy188I	TCNGA	3 cut(s)	253, 787, 864
Hpy188III	TCNNGA	3 cut(s)	41, 326, 371
Hpy8I	GTNNAC	2 cut(s)	737, 757
HpyAV	CCTTC	3 cut(s)	280, 550, 866
HpyCH4III	ACNGT	3 cut(s)	75, 649, 763
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	6 cut(s)	245, 341, 477, 533, 617, 778
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 518, 587, 614
HpyF3I	CTNAG	1 cut(s)	900
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	853
Hsp92II	CATG	3 cut(s)	87, 355, 416
HspAI	GCGC	1 cut(s)	853
KasI	GGCGCC	1 cut(s)	852
Kpn2I	TCCGGA	1 cut(s)	40
KspAI	GTTAAC	1 cut(s)	757
Kzo9I	GATC	2 cut(s)	490, 745
LguI	GCTCTTC	1 cut(s)	860
LmnI	GCTCC	2 cut(s)	25, 370
Lsp1109I	GCAGC	2 cut(s)	353, 492
LweI	GCATC	4 cut(s)	119, 284, 328, 591
MaeI	CTAG	4 cut(s)	261, 509, 548, 680
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	408
MalI	GATC	2 cut(s)	492, 747
MboI	GATC	2 cut(s)	490, 745
MboII	GAAGA	6 cut(s)	851, 851, 877, 895, 912, 922
MfeI	CAATTG	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	523
MlsI	TGGCCA	1 cut(s)	608
MluCI	AATT	3 cut(s)	183, 309, 566
MluNI	TGGCCA	1 cut(s)	608
Mly113I	GGCGCC	1 cut(s)	853
MlyI	GAGTC	1 cut(s)	692
MmeI	TCCRAC	2 cut(s)	360, 745
Mox20I	TGGCCA	1 cut(s)	608
MroI	TCCGGA	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	608
MseI	TTAA	3 cut(s)	47, 756, 926
Msp20I	TGGCCA	1 cut(s)	608
MspA1I	CMGCKG	2 cut(s)	190, 581
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	2 cut(s)	879, 894
MunI	CAATTG	1 cut(s)	309
MvaI	CCWGG	2 cut(s)	879, 894
MwoI	GCNNNNNNNGC	4 cut(s)	94, 518, 587, 614
NarI	GGCGCC	1 cut(s)	853
NdeII	GATC	2 cut(s)	490, 745
NheI	GCTAGC	1 cut(s)	508
NlaIII	CATG	3 cut(s)	87, 355, 416
NlaIV	GGNNCC	1 cut(s)	854
NmuCI	GTSAC	1 cut(s)	408
NspI	RCATGY	1 cut(s)	416
PciI	ACATGT	1 cut(s)	412
PciSI	GCTCTTC	1 cut(s)	860
PfeI	GAWTC	2 cut(s)	161, 813
PfoI	TCCNGGA	1 cut(s)	892
PkrI	GCNGC	3 cut(s)	8, 343, 507
PleI	GAGTC	1 cut(s)	691
PluTI	GGCGCC	1 cut(s)	856
PpsI	GAGTC	1 cut(s)	691
PscI	ACATGT	1 cut(s)	412
Psp6I	CCWGG	2 cut(s)	877, 892
PspFI	CCCAGC	1 cut(s)	724
PspGI	CCWGG	2 cut(s)	877, 892
PspN4I	GGNNCC	1 cut(s)	854
PspPI	GGNCC	4 cut(s)	121, 193, 875, 896
PvuII	CAGCTG	2 cut(s)	190, 581
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	860
SaqAI	TTAA	3 cut(s)	47, 756, 926
SatI	GCNGC	3 cut(s)	7, 342, 506
Sau3AI	GATC	2 cut(s)	490, 745
Sau96I	GGNCC	4 cut(s)	121, 193, 875, 896
SchI	GAGTC	1 cut(s)	692
ScrFI	CCNGG	2 cut(s)	879, 894
SduI	GDGCHC	1 cut(s)	523
SfaNI	GCATC	4 cut(s)	119, 284, 328, 591
SfoI	GGCGCC	1 cut(s)	854
SinI	GGWCC	3 cut(s)	193, 875, 896
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	3 cut(s)	183, 309, 566
SsiI	CCGC	2 cut(s)	132, 636
SspDI	GGCGCC	1 cut(s)	852
SspMI	CTAG	4 cut(s)	261, 509, 548, 680
StyD4I	CCNGG	2 cut(s)	877, 892
TaaI	ACNGT	3 cut(s)	75, 649, 763
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	292
TasI	AATT	3 cut(s)	183, 309, 566
TfiI	GAWTC	2 cut(s)	161, 813
Tru1I	TTAA	3 cut(s)	47, 756, 926
Tru9I	TTAA	3 cut(s)	47, 756, 926
TscAI	CASTG	2 cut(s)	766, 942
TseFI	GTSAC	1 cut(s)	408
TseI	GCWGC	3 cut(s)	6, 341, 505
Tsp45I	GTSAC	1 cut(s)	408
TspDTI	ATGAA	2 cut(s)	641, 719
TspRI	CASTG	2 cut(s)	766, 942
VpaK11BI	GGWCC	3 cut(s)	193, 875, 896
XapI	RAATTY	2 cut(s)	183, 566
XceI	RCATGY	1 cut(s)	416
XspI	CTAG	4 cut(s)	261, 509, 548, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.