Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Reverse (-)

79244155 .. 79250571

Gene Structure 6417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00057300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2163 bp

ATGCCAGTGGCAAGACCTGAAACATCGGATTCGAGAGTCATTGCTCATGTAGACATGGACTGCTTCTACGTTCAAGTGGAACAAAGGAAAAATCCGGAGTTAAGGGGCTTACCTACGGCTGTGGTACAGTATAACTCATGGCAAGGTGGGGGCTTGATTGCTGTCAGCTATGAGGCCCGGAAATATGGTGTGAAGCGTTCAATGCGAGGTGCTGAGTCAAAGCAAGTCTGCCCACAAATTCAGCTGGTCCAAGTCCCAGTAGCACGTGGTAAAGCTGACCTGAACTCATACCGGAATGCAGGTTCAGAGGTGGTTTCTATTCTATCAAGGAAGGGTCGATGTGAGAGGGCTTCAATTGACGAAGTGTATCTTGACCTTACTGATGCAGCAGAAACTATGTTAGCTGAAGCTCCTCCAGAAAGCTTGGAAGAAATTGAGGAGGAAGCTCTCAAGTCACATATTTTGGGGCTCGATAATGAGGACGGAAGTGAAGCCAAAGAAAATGTGAGGAAATGGCTTTGCAAAAGCAATGCTGATCGTCGTGATAAGCTATTAGCTTGTGGGGCTCTCATTGTTGCAGAACTTAGGTTGCTAGTGTTGAAGGAGACAGAATTTACTTGTTCAGCTGGCATTGCTCATAACAAGATGCTGGCCAAACTTGCAAGTGGTATGAATAAACCTGCACAACAGACTGTTGTGCCGTTATCATCTGTGAAAGGATTGCTAGAGTCCTTGCCAATTAAGAAAATGAAACAGCTTGGAGGAAAGCTGGGGAGTTCCTTACAAACTGACCTGGGTGTTAACACTGTCGGAGATTTATTGCAGTTTTCAGAGGAAAAGCTACAGCAACGCTACGGAATTAATACTGGTACCTGGTTATGGAATATTGCAAGGGGGATAAGTGGGGAAGAAGTTGAGGGGCGCCTTCTTCCGAAAAGCCATGGTTCTGGGAAGACATTTCCTGGACCTCAGGCTTTGAAGACGATTTCTTCTGTTCAACACTGGCTTAATGAACTTTGTGAAGATTTCAGTGAACGTCTTCAATTGGACTTGGATGAAAACAAACGTATCGCTCATACACTAGTGCTGCATGCCAACGCATACAAGGCCAGTGATTCAGATTCACAGAAGAAGTTTCCTTCTAAATCTTGTCCCCTTAGGTATGGGGCTGCCAAGATACAAGAAGATGCTCTTAATCTCTTTCAAGCTGCATTACGTGAATACTTGGGTTTATTCACAGCCACAATCCAAGGAAGTCAAAATAACCAATGGGGAATAACATCCCTCTCTGTTTCAGCAAGTAGAATTGTTCCTATACCATCGGGAACAGCTTCAATTATGAAATACTTTCATGGTCATCCGCCATCCTCTTTGACAAAGCAATCACAGGATAATTTCATTGAAGAATCTGCTCCTCCACCACCTTCAGGTGATGAGAACTACTCGGAGCTGAATGTAAATAAGCCACAGATCGAGTTACCTTGTGAAGAAACTACGATCAAGTATTTTGTGCCTAGTTTGCATCAACTGGAAGACAAAAAAAATTTGTTGAATGACCAGAATCTAATGTGTTCTTTAAAAAATCAAGCACAAGATGAATTCATGCAAGAAAGTTTACCCTTGCCAACCTCAGGGAGTGAACACTTCTCAGGAGTGAATCAAAGTCGGCTAATGAAAAATTTTTCTGGTGAAGACCCTTCCGTTAAATTGGCCATGCCTGGATTCAATAGACTGGAGCAGAGAAGAAAAACAGTGAAAGACAAGGGAACCTCTTCAATATTGAGATTTTTTAAGAACCAAGATCCATCTTCCTCTCCAAAAAAGCTAGAACATGTAGAAAATACTGAAGATGCTAAAGCACTGCTATCTGTTGGTCCTCAGTCTAGAAGTGATAATTATTTGGATCATAATCAGTCTGAGTTGCCAAAAGAAAGGCCTTTCGAAGAACCTGGGACTTCTAGTGCACCTATTTCATCTCAATTTGAACAAAGAAGGGGAGTATGGAGTTACAATACTGACGAGATTGACCCCTCTGTCATTGATGAGTTACCACCAGAAATTCAACAAGAAGTTCGTGCCTGGCTCAGGCCTCATAAGCGGCAAAATGTAGTGAAACGGGGTTCTAGTATTGCCGATTATTTCTTACCCACAAGGAATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

720

Amino Acids

80.05

Weight (kDa)

6.24

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMS	PF00817	17 - 222	2.3e-41	impB/mucB/samB family
POLH-Rev1_HhH	PF21704	245 - 300	5.4e-24	DNApol eta/Rev1, HhH motif
IMS_HHH_1	PF21999	256 - 300	4.9e-06	DNA polymerase-iota, thumb domain
IMS_C	PF11799	311 - 438	2.6e-08	impB/mucB/samB family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2033
Acc36I	ACCTGC	2 cut(s)	290, 688
Acc65I	GGTACC	1 cut(s)	869
AccB1I	GGYRCC	2 cut(s)	869, 921
AccI	GTMKAC	1 cut(s)	51
AccIII	TCCGGA	1 cut(s)	94
AciI	CCGC	2 cut(s)	1361, 2098
AclWI	GGATC	2 cut(s)	1796, 1911
AcoI	YGGCCR	2 cut(s)	651, 1710
AcsI	RAATTY	6 cut(s)	237, 611, 1543, 1598, 1678, 2058
AcuI	CTGAAG	3 cut(s)	426, 1410, 1866
AcvI	CACGTG	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	922
AfaI	GTAC	2 cut(s)	126, 871
AfiI	CCNNNNNNNGG	4 cut(s)	879, 1427, 1631, 2085
AflIII	ACRYGT	1 cut(s)	1831
AhlI	ACTAGT	1 cut(s)	1081
AjnI	CCWGG	6 cut(s)	792, 872, 961, 1717, 1948, 2078
AloI	GAACNNNNNNTCC	2 cut(s)	286, 318
Alw21I	GWGCWC	1 cut(s)	1966
Alw26I	GTCTC	1 cut(s)	599
Alw44I	GTGCAC	1 cut(s)	1962
AlwI	GGATC	2 cut(s)	1796, 1911
Aor13HI	TCCGGA	1 cut(s)	94
AoxI	GGCC	6 cut(s)	174, 651, 1107, 1710, 1934, 2087
ApaLI	GTGCAC	1 cut(s)	1962
ApeKI	GCWGC	4 cut(s)	386, 1087, 1169, 1208
ApoI	RAATTY	6 cut(s)	237, 611, 1543, 1598, 1678, 2058
AseI	ATTAAT	1 cut(s)	861
Asp700I	GAANNNNTTC	3 cut(s)	1038, 1330, 1771
Asp718I	GGTACC	1 cut(s)	869
AspLEI	GCGC	1 cut(s)	924
AspS9I	GGNCC	4 cut(s)	175, 247, 965, 1874
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	2 cut(s)	1442, 1700
AsuII	TTCGAA	1 cut(s)	1941
AvaII	GGWCC	3 cut(s)	247, 965, 1874
AxyI	CCTNAGG	3 cut(s)	969, 1157, 1630
BaeGI	GKGCMC	1 cut(s)	1966
BaeI	ACNNNNGTAYC	2 cut(s)	1051, 1084
BalI	TGGCCA	2 cut(s)	653, 1712
BanI	GGYRCC	2 cut(s)	869, 921
BanII	GRGCYC	2 cut(s)	471, 568
BbrPI	CACGTG	1 cut(s)	266
BbsI	GAAGAC	5 cut(s)	959, 986, 1031, 1539, 1698
Bbv12I	GWGCWC	1 cut(s)	1966
BbvI	GCAGC	4 cut(s)	398, 1074, 1156, 1195
BccI	CCATC	3 cut(s)	1327, 1372, 1813
BceAI	ACGGC	2 cut(s)	132, 685
BciT130I	CCWGG	6 cut(s)	794, 874, 963, 1719, 1950, 2080
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	599
BcuI	ACTAGT	1 cut(s)	1081
BfaI	CTAG	8 cut(s)	593, 725, 1082, 1515, 1826, 1884, 1959, 2124
BfmI	CTRYAG	1 cut(s)	842
BfoI	RGCGCY	1 cut(s)	925
BfuAI	ACCTGC	2 cut(s)	290, 688
BisI	GCNGC	5 cut(s)	387, 1088, 1170, 1209, 2099
BlsI	GCNGC	5 cut(s)	388, 1089, 1171, 1210, 2100
Bme1390I	CCNGG	7 cut(s)	178, 794, 874, 963, 1719, 1950, 2080
Bme18I	GGWCC	3 cut(s)	247, 965, 1874
BmgT120I	GGNCC	4 cut(s)	175, 247, 965, 1874
BmiI	GGNNCC	3 cut(s)	871, 923, 1768
BmrFI	CCNGG	7 cut(s)	178, 794, 874, 963, 1719, 1950, 2080
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	5 cut(s)	373, 636, 1177, 1531, 1840
BmuI	ACTGGG	1 cut(s)	251
BpiI	GAAGAC	5 cut(s)	959, 986, 1031, 1539, 1698
BplI	GAGNNNNNCTC	2 cut(s)	1427, 1459
BpmI	CTGGAG	2 cut(s)	399, 1754
Bpu10I	CCTNAGC	1 cut(s)	2084
Bpu14I	TTCGAA	1 cut(s)	1941
BpuEI	CTTGAG	1 cut(s)	434
BpuMI	CCSGG	1 cut(s)	178
BsaAI	YACGTR	2 cut(s)	266, 1217
BsaBI	GATNNNNATC	1 cut(s)	1908
BsaHI	GRCGYC	1 cut(s)	922
BsaJI	CCNNGG	4 cut(s)	793, 940, 1249, 1949
BsaWI	WCCGGW	2 cut(s)	94, 291
Bsc4I	CCNNNNNNNGG	4 cut(s)	879, 1427, 1631, 2085
Bse1I	ACTGG	7 cut(s)	5, 257, 871, 1007, 1110, 1533, 1737
Bse21I	CCTNAGG	3 cut(s)	969, 1157, 1630
Bse3DI	GCAATG	3 cut(s)	39, 535, 630
Bse8I	GATNNNNATC	1 cut(s)	1908
BseAI	TCCGGA	1 cut(s)	94
BseBI	CCWGG	6 cut(s)	794, 874, 963, 1719, 1950, 2080
BseDI	CCNNGG	4 cut(s)	793, 940, 1249, 1949
BseGI	GGATG	4 cut(s)	1060, 1280, 1357, 1364
BseJI	GATNNNNATC	1 cut(s)	1908
BseLI	CCNNNNNNNGG	4 cut(s)	879, 1427, 1631, 2085
BseMI	GCAATG	3 cut(s)	39, 535, 630
BseMII	CTCAG	7 cut(s)	204, 983, 1644, 1662, 1892, 1908, 2098
BseNI	ACTGG	7 cut(s)	5, 257, 871, 1007, 1110, 1533, 1737
BseRI	GAGGAG	3 cut(s)	402, 452, 1404
BseSI	GKGCMC	1 cut(s)	1966
BseXI	GCAGC	4 cut(s)	398, 1074, 1156, 1195
BseYI	CCCAGC	1 cut(s)	769
BsgI	GTGCAG	1 cut(s)	666
BshFI	GGCC	6 cut(s)	176, 653, 1109, 1712, 1936, 2089
BshNI	GGYRCC	2 cut(s)	869, 921
BsiHKAI	GWGCWC	1 cut(s)	1966
BsiSI	CCGG	3 cut(s)	95, 178, 292
BslFI	GGGAC	3 cut(s)	239, 1137, 1966
BslI	CCNNNNNNNGG	4 cut(s)	879, 1427, 1631, 2085
BsmAI	GTCTC	1 cut(s)	599
BsmFI	GGGAC	3 cut(s)	239, 1137, 1966
BsmI	GAATGC	2 cut(s)	301, 2161
BsnI	GGCC	6 cut(s)	176, 653, 1109, 1712, 1936, 2089
Bsp119I	TTCGAA	1 cut(s)	1941
Bsp1286I	GDGCHC	3 cut(s)	471, 568, 1966
Bsp13I	TCCGGA	1 cut(s)	94
Bsp143I	GATC	5 cut(s)	535, 1470, 1497, 1801, 1903
Bsp19I	CCATGG	1 cut(s)	940
BspACI	CCGC	2 cut(s)	1361, 2098
BspANI	GGCC	6 cut(s)	176, 653, 1109, 1712, 1936, 2089
BspCNI	CTCAG	7 cut(s)	205, 982, 1643, 1661, 1891, 1909, 2097
BspEI	TCCGGA	1 cut(s)	94
BspLI	GGNNCC	3 cut(s)	871, 923, 1768
BspMI	ACCTGC	2 cut(s)	290, 688
BspPI	GGATC	2 cut(s)	1796, 1911
BspT104I	TTCGAA	1 cut(s)	1941
BspT107I	GGYRCC	2 cut(s)	869, 921
BsrDI	GCAATG	3 cut(s)	39, 535, 630
BsrI	ACTGG	7 cut(s)	5, 257, 871, 1007, 1110, 1533, 1737
BssECI	CCNNGG	4 cut(s)	793, 940, 1249, 1949
BssMI	GATC	5 cut(s)	535, 1470, 1497, 1801, 1903
BssNI	GRCGYC	1 cut(s)	922
BssT1I	CCWWGG	2 cut(s)	940, 1249
Bst2UI	CCWGG	6 cut(s)	794, 874, 963, 1719, 1950, 2080
Bst4CI	ACNGT	4 cut(s)	129, 694, 808, 1753
Bst6I	CTCTTC	1 cut(s)	1777
BstACI	GRCGYC	1 cut(s)	922
BstBAI	YACGTR	2 cut(s)	266, 1217
BstBI	TTCGAA	1 cut(s)	1941
BstC8I	GCNNGC	3 cut(s)	628, 651, 1092
BstDEI	CTNAG	9 cut(s)	213, 584, 969, 1157, 1630, 1648, 1878, 1917, 2084
BstDSI	CCRYGG	1 cut(s)	940
BstENI	CCTNNNNNAGG	1 cut(s)	2083
BstF5I	GGATG	4 cut(s)	1060, 1280, 1357, 1364
BstH2I	RGCGCY	1 cut(s)	925
BstHHI	GCGC	1 cut(s)	924
BstKTI	GATC	5 cut(s)	538, 1473, 1500, 1804, 1906
BstMAI	GTCTC	1 cut(s)	599
BstMBI	GATC	5 cut(s)	535, 1470, 1497, 1801, 1903
BstMWI	GCNNNNNNNGC	7 cut(s)	202, 563, 632, 659, 1106, 1519, 2095
BstNI	CCWGG	6 cut(s)	794, 874, 963, 1719, 1950, 2080
BstNSI	RCATGY	2 cut(s)	1094, 1835
BstSCI	CCNGG	7 cut(s)	176, 792, 872, 961, 1717, 1948, 2078
BstSFI	CTRYAG	1 cut(s)	842
BstSLI	GKGCMC	1 cut(s)	1966
BstV1I	GCAGC	4 cut(s)	398, 1074, 1156, 1195
BstV2I	GAAGAC	5 cut(s)	959, 986, 1031, 1539, 1698
BstX2I	RGATCY	1 cut(s)	1801
BstXI	CCANNNNNNTGG	1 cut(s)	947
BstYI	RGATCY	1 cut(s)	1801
Bsu36I	CCTNAGG	3 cut(s)	969, 1157, 1630
BsuRI	GGCC	6 cut(s)	176, 653, 1109, 1712, 1936, 2089
BtgI	CCRYGG	1 cut(s)	940
BtsCI	GGATG	4 cut(s)	1060, 1280, 1357, 1364
BtsI	GCAGTG	1 cut(s)	1859
BtsIMutI	CAGTG	7 cut(s)	12, 804, 1000, 1036, 1117, 1758, 1859
BveI	ACCTGC	2 cut(s)	290, 688
Cac8I	GCNNGC	3 cut(s)	628, 651, 1092
CfoI	GCGC	1 cut(s)	924
Cfr13I	GGNCC	4 cut(s)	175, 247, 965, 1874
CsiI	ACCWGGT	1 cut(s)	872
Csp6I	GTAC	2 cut(s)	125, 870
CviAII	CATG	9 cut(s)	47, 55, 138, 941, 1091, 1352, 1603, 1714, 1832
CviQI	GTAC	2 cut(s)	125, 870
DdeI	CTNAG	9 cut(s)	213, 584, 969, 1157, 1630, 1648, 1878, 1917, 2084
DinI	GGCGCC	1 cut(s)	923
DpnI	GATC	5 cut(s)	537, 1472, 1499, 1803, 1905
DpnII	GATC	5 cut(s)	535, 1470, 1497, 1801, 1903
DraI	TTTAAA	1 cut(s)	1578
DrdI	GACNNNNNNGTC	1 cut(s)	2033
DseDI	GACNNNNNNGTC	1 cut(s)	2033
EaeI	YGGCCR	2 cut(s)	651, 1710
Eam1104I	CTCTTC	1 cut(s)	1777
EarI	CTCTTC	1 cut(s)	1777
EciI	GGCGGA	1 cut(s)	1350
Eco130I	CCWWGG	2 cut(s)	940, 1249
Eco147I	AGGCCT	2 cut(s)	1936, 2089
Eco24I	GRGCYC	2 cut(s)	471, 568
Eco47I	GGWCC	3 cut(s)	247, 965, 1874
Eco57I	CTGAAG	3 cut(s)	426, 1410, 1866
Eco72I	CACGTG	1 cut(s)	266
Eco81I	CCTNAGG	3 cut(s)	969, 1157, 1630
EcoNI	CCTNNNNNAGG	1 cut(s)	2083
EcoRI	GAATTC	1 cut(s)	1598
EcoRII	CCWGG	6 cut(s)	792, 872, 961, 1717, 1948, 2078
EcoT14I	CCWWGG	2 cut(s)	940, 1249
EcoT22I	ATGCAT	1 cut(s)	2161
EcoT38I	GRGCYC	2 cut(s)	471, 568
EgeI	GGCGCC	1 cut(s)	923
EheI	GGCGCC	1 cut(s)	923
ErhI	CCWWGG	2 cut(s)	940, 1249
FaeI	CATG	9 cut(s)	50, 58, 141, 944, 1094, 1355, 1606, 1717, 1835
FalI	AAGNNNNNCTT	4 cut(s)	354, 386, 1176, 1208
FaqI	GGGAC	3 cut(s)	239, 1137, 1966
FatI	CATG	9 cut(s)	46, 54, 137, 940, 1090, 1351, 1602, 1713, 1831
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	5 cut(s)	387, 1088, 1170, 1209, 2099
FokI	GGATG	4 cut(s)	1067, 1267, 1344, 1351
FriOI	GRGCYC	2 cut(s)	471, 568
Fsp4HI	GCNGC	5 cut(s)	387, 1088, 1170, 1209, 2099
FspBI	CTAG	8 cut(s)	593, 725, 1082, 1515, 1826, 1884, 1959, 2124
GlaI	GCGC	1 cut(s)	923
GluI	GCNGC	5 cut(s)	387, 1088, 1170, 1209, 2099
GsaI	CCCAGC	1 cut(s)	773
GsuI	CTGGAG	2 cut(s)	399, 1754
HaeII	RGCGCY	1 cut(s)	925
HaeIII	GGCC	6 cut(s)	176, 653, 1109, 1712, 1936, 2089
HapII	CCGG	3 cut(s)	95, 178, 292
HhaI	GCGC	1 cut(s)	924
Hin1I	GRCGYC	1 cut(s)	922
Hin1II	CATG	9 cut(s)	50, 58, 141, 944, 1094, 1355, 1606, 1717, 1835
Hin6I	GCGC	1 cut(s)	922
HinP1I	GCGC	1 cut(s)	922
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HindIII	AAGCTT	1 cut(s)	421
HpaI	GTTAAC	1 cut(s)	802
HpaII	CCGG	3 cut(s)	95, 178, 292
HphI	GGTGA	2 cut(s)	1442, 1700
Hpy166II	GTNNAC	6 cut(s)	52, 802, 1034, 1616, 1640, 1964
Hpy188I	TCNGA	8 cut(s)	28, 307, 812, 832, 933, 1120, 1447, 1918
Hpy188III	TCNNGA	8 cut(s)	33, 95, 371, 416, 542, 1323, 1650, 1884
Hpy8I	GTNNAC	6 cut(s)	52, 802, 1034, 1616, 1640, 1964
Hpy99I	CGWCG	1 cut(s)	543
HpyAV	CCTTC	7 cut(s)	325, 595, 935, 1149, 1434, 1707, 1986
HpyCH4III	ACNGT	4 cut(s)	129, 694, 808, 1753
HpyCH4IV	ACGT	5 cut(s)	69, 265, 1036, 1066, 1216
HpyF10VI	GCNNNNNNNGC	7 cut(s)	202, 563, 632, 659, 1106, 1519, 2095
HpyF3I	CTNAG	9 cut(s)	213, 584, 969, 1157, 1630, 1648, 1878, 1917, 2084
HpySE526I	ACGT	5 cut(s)	69, 265, 1036, 1066, 1216
Hsp92I	GRCGYC	1 cut(s)	922
Hsp92II	CATG	9 cut(s)	50, 58, 141, 944, 1094, 1355, 1606, 1717, 1835
HspAI	GCGC	1 cut(s)	922
KasI	GGCGCC	1 cut(s)	921
Kpn2I	TCCGGA	1 cut(s)	94
KpnI	GGTACC	1 cut(s)	873
KspAI	GTTAAC	1 cut(s)	802
Kzo9I	GATC	5 cut(s)	535, 1470, 1497, 1801, 1903
LmnI	GCTCC	4 cut(s)	415, 1417, 1447, 1735
Lsp1109I	GCAGC	4 cut(s)	398, 1074, 1156, 1195
LweI	GCATC	5 cut(s)	373, 636, 1177, 1531, 1840
MabI	ACCWGGT	1 cut(s)	872
MaeI	CTAG	8 cut(s)	593, 725, 1082, 1515, 1826, 1884, 1959, 2124
MaeII	ACGT	5 cut(s)	69, 265, 1036, 1066, 1216
MaeIII	GTNAC	4 cut(s)	453, 1476, 2006, 2046
MalI	GATC	5 cut(s)	537, 1472, 1499, 1803, 1905
MboI	GATC	5 cut(s)	535, 1470, 1497, 1801, 1903
MfeI	CAATTG	2 cut(s)	354, 1043
MflI	RGATCY	1 cut(s)	1801
MhlI	GDGCHC	3 cut(s)	471, 568, 1966
MlsI	TGGCCA	2 cut(s)	653, 1712
MluNI	TGGCCA	2 cut(s)	653, 1712
Mly113I	GGCGCC	1 cut(s)	922
MlyI	GAGTC	3 cut(s)	45, 224, 737
MmeI	TCCRAC	1 cut(s)	790
Mox20I	TGGCCA	2 cut(s)	653, 1712
Mph1103I	ATGCAT	1 cut(s)	2161
MroI	TCCGGA	1 cut(s)	94
MroXI	GAANNNNTTC	3 cut(s)	1038, 1330, 1771
MscI	TGGCCA	2 cut(s)	653, 1712
MseI	TTAA	9 cut(s)	101, 741, 801, 861, 1008, 1194, 1577, 1704, 1791
Msp20I	TGGCCA	2 cut(s)	653, 1712
MspA1I	CMGCKG	2 cut(s)	244, 626
MspI	CCGG	3 cut(s)	95, 178, 292
MspR9I	CCNGG	7 cut(s)	178, 794, 874, 963, 1719, 1950, 2080
MunI	CAATTG	2 cut(s)	354, 1043
Mva1269I	GAATGC	2 cut(s)	301, 2161
MvaI	CCWGG	6 cut(s)	794, 874, 963, 1719, 1950, 2080
MwoI	GCNNNNNNNGC	7 cut(s)	202, 563, 632, 659, 1106, 1519, 2095
NarI	GGCGCC	1 cut(s)	922
NciI	CCSGG	1 cut(s)	178
NcoI	CCATGG	1 cut(s)	940
NdeII	GATC	5 cut(s)	535, 1470, 1497, 1801, 1903
NlaIII	CATG	9 cut(s)	50, 58, 141, 944, 1094, 1355, 1606, 1717, 1835
NlaIV	GGNNCC	3 cut(s)	871, 923, 1768
NmuCI	GTSAC	1 cut(s)	453
NsiI	ATGCAT	1 cut(s)	2161
NspI	RCATGY	2 cut(s)	1094, 1835
NspV	TTCGAA	1 cut(s)	1941
PaeI	GCATGC	1 cut(s)	1094
PceI	AGGCCT	2 cut(s)	1936, 2089
PciI	ACATGT	1 cut(s)	1831
PctI	GAATGC	2 cut(s)	301, 2161
PdmI	GAANNNNTTC	3 cut(s)	1038, 1330, 1771
PfeI	GAWTC	7 cut(s)	29, 1115, 1121, 1406, 1561, 1657, 1722
PfoI	TCCNGGA	1 cut(s)	961
PkrI	GCNGC	5 cut(s)	388, 1089, 1171, 1210, 2100
PleI	GAGTC	3 cut(s)	44, 223, 736
PluTI	GGCGCC	1 cut(s)	925
PmaCI	CACGTG	1 cut(s)	266
PmlI	CACGTG	1 cut(s)	266
PpsI	GAGTC	3 cut(s)	44, 223, 736
Ppu21I	YACGTR	2 cut(s)	266, 1217
PscI	ACATGT	1 cut(s)	1831
PshBI	ATTAAT	1 cut(s)	861
Psp6I	CCWGG	6 cut(s)	792, 872, 961, 1717, 1948, 2078
PspCI	CACGTG	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	769
PspGI	CCWGG	6 cut(s)	792, 872, 961, 1717, 1948, 2078
PspN4I	GGNNCC	3 cut(s)	871, 923, 1768
PspPI	GGNCC	4 cut(s)	175, 247, 965, 1874
PsuI	RGATCY	1 cut(s)	1801
PvuII	CAGCTG	2 cut(s)	244, 626
RsaI	GTAC	2 cut(s)	126, 871
RsaNI	GTAC	2 cut(s)	125, 870
SaqAI	TTAA	9 cut(s)	101, 741, 801, 861, 1008, 1194, 1577, 1704, 1791
SatI	GCNGC	5 cut(s)	387, 1088, 1170, 1209, 2099
Sau3AI	GATC	5 cut(s)	535, 1470, 1497, 1801, 1903
Sau96I	GGNCC	4 cut(s)	175, 247, 965, 1874
SchI	GAGTC	3 cut(s)	45, 224, 737
ScrFI	CCNGG	7 cut(s)	178, 794, 874, 963, 1719, 1950, 2080
SduI	GDGCHC	3 cut(s)	471, 568, 1966
SexAI	ACCWGGT	1 cut(s)	872
SfaNI	GCATC	5 cut(s)	373, 636, 1177, 1531, 1840
SfcI	CTRYAG	1 cut(s)	842
SfoI	GGCGCC	1 cut(s)	923
SfuI	TTCGAA	1 cut(s)	1941
SinI	GGWCC	3 cut(s)	247, 965, 1874
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
SpeI	ACTAGT	1 cut(s)	1081
SphI	GCATGC	1 cut(s)	1094
SseBI	AGGCCT	2 cut(s)	1936, 2089
SsiI	CCGC	2 cut(s)	1361, 2098
SspDI	GGCGCC	1 cut(s)	921
SspI	AATATT	2 cut(s)	886, 1779
SspMI	CTAG	8 cut(s)	593, 725, 1082, 1515, 1826, 1884, 1959, 2124
StuI	AGGCCT	2 cut(s)	1936, 2089
StyD4I	CCNGG	7 cut(s)	176, 792, 872, 961, 1717, 1948, 2078
StyI	CCWWGG	2 cut(s)	940, 1249
TaaI	ACNGT	4 cut(s)	129, 694, 808, 1753
TaiI	ACGT	5 cut(s)	72, 268, 1039, 1069, 1219
TaqI	TCGA	5 cut(s)	32, 337, 471, 1473, 1941
TauI	GCSGC	1 cut(s)	2101
TfiI	GAWTC	7 cut(s)	29, 1115, 1121, 1406, 1561, 1657, 1722
Tru1I	TTAA	9 cut(s)	101, 741, 801, 861, 1008, 1194, 1577, 1704, 1791
Tru9I	TTAA	9 cut(s)	101, 741, 801, 861, 1008, 1194, 1577, 1704, 1791
TscAI	CASTG	7 cut(s)	12, 811, 1007, 1036, 1117, 1758, 1866
TseFI	GTSAC	1 cut(s)	453
TseI	GCWGC	4 cut(s)	386, 1087, 1169, 1208
Tsp45I	GTSAC	1 cut(s)	453
TspGWI	ACGGA	3 cut(s)	498, 870, 1690
TspRI	CASTG	7 cut(s)	12, 811, 1007, 1036, 1117, 1758, 1866
VneI	GTGCAC	1 cut(s)	1962
VpaK11BI	GGWCC	3 cut(s)	247, 965, 1874
VspI	ATTAAT	1 cut(s)	861
XagI	CCTNNNNNAGG	1 cut(s)	2083
XapI	RAATTY	6 cut(s)	237, 611, 1543, 1598, 1678, 2058
XbaI	TCTAGA	1 cut(s)	1883
XceI	RCATGY	2 cut(s)	1094, 1835
XmiI	GTMKAC	1 cut(s)	51
XmnI	GAANNNNTTC	3 cut(s)	1038, 1330, 1771
XspI	CTAG	8 cut(s)	593, 725, 1082, 1515, 1826, 1884, 1959, 2124
Zsp2I	ATGCAT	1 cut(s)	2161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.