Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Reverse (-)

79285801 .. 79287251

Gene Structure 1451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00057320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTTAGCTGAAGCTCCTCCTGAAAGGTTGGAAGCGATTGAGGAGGAAGCTCTCAAGTCACATGTTTTGAGGCTTGATAGCGAGGTTGGGTTCAATGCGTTTGGACATGACGGAAGTGAAGCCAAAGAAAATGAGAGTAGATGGCTCTGCAAAAGCAATGCTGATCGCCGTGATAAGCTGCTAGCTTGTGGGGCTCTCATTGTTGCAGAACTTAGGAGACAGAATTCACTTGTTCAGCTGGCATCGCTCATAATAAGGAAACAGTTTGGAGGAGAGCTGAGGAGTAGTTTACAAAGTGTTTTGGGTGTTAACACTGTTGGAGATTCATTGCAGTTTTCAGAGGAAAAGCGACAAGAACACTATGGAATCAATACGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

126

Amino Acids

13.98

Weight (kDa)

5.42

Isoelectric Point (pI)

74.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POLH-Rev1_HhH	PF21704	87 - 126	7.7e-06	DNApol eta/Rev1, HhH motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	30
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	7 cut(s)	8, 14, 50, 178, 185, 238, 277
AluI	AGCT	7 cut(s)	8, 14, 50, 178, 185, 238, 277
Alw26I	GTCTC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	223
AsuNHI	GCTAGC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	196
BbvCI	CCTCAGC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	1 cut(s)	135
BceAI	ACGGC	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	182
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
BmsI	GCATC	1 cut(s)	251
BmtI	GCTAGC	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	38
Bse3DI	GCAATG	2 cut(s)	163, 326
BseMI	GCAATG	2 cut(s)	163, 326
BseMII	CTCAG	1 cut(s)	269
BseRI	GAGGAG	4 cut(s)	6, 56, 285, 295
BseXI	GCAGC	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	163
BspCNI	CTCAG	1 cut(s)	270
BspOI	GCTAGC	1 cut(s)	185
BsrDI	GCAATG	2 cut(s)	163, 326
BssMI	GATC	1 cut(s)	163
Bst4CI	ACNGT	2 cut(s)	264, 316
BstC8I	GCNNGC	2 cut(s)	183, 240
BstDEI	CTNAG	2 cut(s)	212, 278
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 244
BstNSI	RCATGY	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	2 cut(s)	183, 240
CviAII	CATG	2 cut(s)	62, 107
DdeI	CTNAG	2 cut(s)	212, 278
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	30
EcoRI	GAATTC	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	196
FaeI	CATG	2 cut(s)	65, 110
FaiI	YATR	4 cut(s)	63, 108, 251, 363
FatI	CATG	2 cut(s)	61, 106
Fnu4HI	GCNGC	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	1 cut(s)	179
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	65, 110
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	2 cut(s)	323, 366
HpaI	GTTAAC	1 cut(s)	310
Hpy166II	GTNNAC	2 cut(s)	290, 310
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	2 cut(s)	290, 310
HpyCH4III	ACNGT	2 cut(s)	264, 316
HpyCH4V	TGCA	3 cut(s)	150, 206, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 244
HpyF3I	CTNAG	2 cut(s)	212, 278
Hsp92II	CATG	2 cut(s)	65, 110
KspAI	GTTAAC	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	2 cut(s)	33, 224
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	1 cut(s)	251
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	1 cut(s)	223
MmeI	TCCRAC	2 cut(s)	9, 298
MnlI	CCTC	8 cut(s)	27, 34, 37, 63, 76, 263, 273, 334
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	238
MwoI	GCNNNNNNNGC	2 cut(s)	191, 244
NdeII	GATC	1 cut(s)	163
NheI	GCTAGC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	65, 110
NmuCI	GTSAC	1 cut(s)	57
NspI	RCATGY	1 cut(s)	65
PciI	ACATGT	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	323, 366
PkrI	GCNGC	1 cut(s)	180
PscI	ACATGT	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	9 cut(s)	10, 16, 29, 52, 87, 180, 187, 240, 279
SfaNI	GCATC	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	223
SspMI	CTAG	1 cut(s)	182
TaaI	ACNGT	2 cut(s)	264, 316
TasI	AATT	1 cut(s)	223
TfiI	GAWTC	2 cut(s)	323, 366
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	1 cut(s)	315
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	319
XapI	RAATTY	1 cut(s)	223
XceI	RCATGY	1 cut(s)	65
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.