Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Forward (+)

15464491 .. 15470450

Gene Structure 5960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30123

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2769 bp

ATGCAAACTAAAACTGTGCTTTACTTTACAATGGAACAAAGGAAAAATCCGGAGTTAAGGGGCTTACCTACGGTTGTGGTACAGTATAACTCATGGCAAGGTGGGGGCTTGATTGCTGTCAGCTATGAGGCCCGGAAATATGGTGTGAAGCGTGTAGGGGTTGAGGATCTAAACCACCTCTTTTTCTCTTGCCCCTATGCTTCGGATGTTTGGAGGACAGCTGGGATCTCTTCTCTTGGTTTTAATACATTTGATGATTGGTTTTCTTCTTGGTTCGACATTGGATATGAAAATATTTCTACTGAAAATTGTGTTCTGATTTGCTGGAAAATTTGGGAGGCAAGAAACAACCTCGTCTTTAGGCAGACAGTCTCCTCACCTGCCTCAGTTGTCTTCTCCTCTGCGGCAATTGCTAAAGATTTCAGATGCGCCAACTCGGTGTCCATTTCAACTGCTTCTTCAGAGTCGGCCTCCCCTCCGGTTCTTCGGCCAAGACGTTCAGACATTAAATGGAAACCTCCCTCTCCTGGTTTCTGGAAGCTAAACTTTGATGGTTCCGTCGTTGGAAACAAAAGTGCTGCTGCGGGTTTTGTCCTTCGAGATGAGCATGGTAACCCTATTTTTGCGGGGTCCAGAAATATTGGCATCTCCTCAGTTCCTGTTGCGGAAGGAAATGCTCTTCGTGATGGACTCTATCATGCCCTTCTCCTCGGATGTAGGAAGATTTTAGCTGAAGGTGATTCCAAGCTTCTGATTGACGTTGTCAATAACAAGTGTGCCACTCCGTGGAGGCTTCGTACTCTTGTTAGAGATATCGATAACCTTTCTACCAATTTTGAGCACATTGTCTTTTCTTTCATCCCTCGGGAGGCAAATTTTTTGGCTAATGCGATCGCGAATCAAGGTCACCTTTTGAAGACTCCTACTACTTGGAAGGGAAGACTCCCCCTTTCAGCCCTTTCTGCTTTCAACTTTGATTCTTTTAGTTTCGGTTGTCCTAGGGGCTTCCGGTTTTCAATGCGAGGTGCTGAGTCAAAGCAAGTCTGCCCACAAATTCAGCTGGTCCAAGTCCCAGTAGCACGTGGTAAAGCTGACCTGAACTCATACCGGAATGCAGGTTCAGCGGTGGTTTCTATTCTATCAAGGAAGGGTCGATGTGAGAGGGCTTCAATTGACGAAGTGTATCTTGACCTTACCGATGCAGCAGAAACCATGTTAGCTGAAGCTCCTCCAGAAAGCTTGGAAGAAATTGAGGAGGAAGCTCTCAAGTCACATGTTTTGGGGCTCGATAATGAGGACGGAAGTGAAGCCAAAGAAAATGTGAGGAAATGGCTTTGCAAAAGCAATGCTGATCGTCGTGATAAGCTATTAGCTTGTGGGGCTCTCATTGTTGCAGAACTTAGGTTGCTAGTGTTGAAGGAGACAGAATTTACTTGTTCAGCTGGCATTGCTCATAACAAGATGCTGGCCAAACTTGCAAGTGGTATGAATAAACCTGCACAACAGACTGTTGTGCCGTTATCATCTGTGAAAGGATTGCTAGAGTCCTTGCCAATTAAGAAAATGAAACAGCTTGGAGGAAAGCTGGGGAGTTCCTTACAAACTGACCTGGGTGTTAACACTGTCGGAGATTTATTGCAGTTTTCAGAGGAAAAGCTACAGCAACGCTACGGAATTAATACTGGTACCTGGTTATGGAACATTGCAAGGGGGATAAGTGGGGAAGAAGTTGAGGGGCGCCTTCTTCCGAAAAGCCATGGTTCTGGGAAGACATTTCCTGGACCTCAGGCTTTGAAGACGATTTCTTCTGTTCAACACTGGCTTAATGAACTTTGTGAAGATTTGAGTGAACGTCTTCACTTGGACTTGGAAGAAAACAAACGTATCGCTCATACACTAGTGCTGCATGGCAACGCATACAAGGCCAGTGATTCAGATTCACAGAAGAAGTTCCCTTCTAAATCTTGTCCCCTTAGGTATGGGGCTGCCAAGATACAAGAAGATGTTCTTAATCTTTTTCAAGCTGCATTACGTGAATACTTAGGTCTATTCACAGCCAAAATCCAAGGAAGTCAAAATAACCAATGGGGAATAACATCCCTCTCTGTTTCAGCAAGTAAAATTGTTCCTATACCATCGAATCCGTGTTGCTTTTTAAAAAATCAAGCACAAGATGAATTCATGCAAGAAAGTTTACCCTTGCCAACCTCAGGGAGCGAACACTTCTCAGGAGTGAATCAAAGTCAGCTAATGAAAAATTCTTCTGGTGAAGACCCTTCTGTTAAATTGGCCATGCCTGGTTTCAGAAGATTGGAGCAGAAAAGGAAAACAGTGAAAAACAAGGGAACCTCTTCAATATTGAGATTTTTTAAGAACCAAGATCCATCTTCCTCTCCGAAAAAGCTAGAACATGTAGAAAATACTGAAGATGCTAAAGCACTGCTATCTGTTGGCCCTCAGTCTAGAAGTGATAATTATTTGGATCATAATCAATCTGAGTTGCCAAAAGAAAGGCCTTTCGAAGAAACTGGGACTTCTAGTGCACCTAGTTCATCTCAATTTGAACAAAGAAGGGGAGTATGGAGTTACAATAATGACGAGATTGACCCCTCTGTCATTGATGAGTTACCACCAGAAATTCAACAAGAAGTTCGTGCCTGGCTCAGGCCTCACAAGCGGCAAAATGTAGCGAAACAGGGTTCTAGTATTGCCTCTCCCTTATTGGGAGATAAGGGAGAGGATCCTCTCCTGAGCTCATTCCCCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

922

Amino Acids

101.83

Weight (kDa)

8.5

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMS	PF00817	8 - 51	1.4e-07	impB/mucB/samB family
RVT_3	PF13456	182 - 301	3.1e-23	Reverse transcriptase-like
IMS	PF00817	335 - 494	3.2e-19	impB/mucB/samB family
POLH-Rev1_HhH	PF21704	517 - 572	7.3e-24	DNApol eta/Rev1, HhH motif
IMS_HHH_1	PF21999	528 - 572	6.7e-06	DNA polymerase-iota, thumb domain
IMS_C	PF11799	583 - 710	3.4e-08	impB/mucB/samB family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	388
AasI	GACNNNNNNGTC	1 cut(s)	2612
Acc36I	ACCTGC	3 cut(s)	388, 1106, 1504
Acc65I	GGTACC	1 cut(s)	1685
AccB1I	GGYRCC	2 cut(s)	1685, 1737
AccB7I	CCANNNNNTGG	1 cut(s)	786
AccII	CGCG	1 cut(s)	896
AccIII	TCCGGA	1 cut(s)	49
AciI	CCGC	6 cut(s)	404, 584, 626, 665, 1124, 2677
AclWI	GGATC	6 cut(s)	174, 233, 2375, 2490, 2735, 2748
AcoI	YGGCCR	3 cut(s)	488, 1467, 2289
AcsI	RAATTY	7 cut(s)	330, 874, 1053, 1427, 2177, 2257, 2637
AcuI	CTGAAG	4 cut(s)	444, 753, 1242, 2445
AcvI	CACGTG	1 cut(s)	1082
AcyI	GRCGYC	1 cut(s)	1738
AdeI	CACNNNGTG	1 cut(s)	786
AfaI	GTAC	3 cut(s)	81, 799, 1687
AfiI	CCNNNNNNNGG	7 cut(s)	527, 786, 868, 1695, 2210, 2664, 2723
AflIII	ACRYGT	2 cut(s)	1273, 2410
AhlI	ACTAGT	1 cut(s)	1897
AjnI	CCWGG	6 cut(s)	526, 1608, 1688, 1777, 2296, 2657
AloI	GAACNNNNNNTCC	2 cut(s)	1102, 1134
Alw21I	GWGCWC	3 cut(s)	843, 2545, 2756
Alw26I	GTCTC	2 cut(s)	376, 1415
Alw44I	GTGCAC	1 cut(s)	2541
AlwI	GGATC	6 cut(s)	174, 233, 2375, 2490, 2735, 2748
AlwNI	CAGNNNCTG	1 cut(s)	659
Ama87I	CYCGRG	1 cut(s)	864
Aor13HI	TCCGGA	1 cut(s)	49
AoxI	GGCC	9 cut(s)	129, 468, 488, 1467, 1923, 2289, 2452, 2513, 2666
ApaLI	GTGCAC	1 cut(s)	2541
ApeKI	GCWGC	6 cut(s)	578, 581, 1202, 1903, 1985, 2024
ApoI	RAATTY	7 cut(s)	330, 874, 1053, 1427, 2177, 2257, 2637
AseI	ATTAAT	1 cut(s)	1677
AsiSI	GCGATCGC	1 cut(s)	894
Asp700I	GAANNNNTTC	4 cut(s)	1854, 1949, 2004, 2350
Asp718I	GGTACC	1 cut(s)	1685
AspA2I	CCTAGG	1 cut(s)	998
AspLEI	GCGC	2 cut(s)	431, 1740
AspS9I	GGNCC	5 cut(s)	130, 630, 1063, 1781, 2453
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	4 cut(s)	369, 749, 899, 2279
AsuII	TTCGAA	1 cut(s)	2520
AvaI	CYCGRG	1 cut(s)	864
AvaII	GGWCC	3 cut(s)	630, 1063, 1781
AvrII	CCTAGG	1 cut(s)	998
AxyI	CCTNAGG	3 cut(s)	1785, 1973, 2209
BaeGI	GKGCMC	1 cut(s)	2545
BaeI	ACNNNNGTAYC	2 cut(s)	1867, 1900
BalI	TGGCCA	2 cut(s)	1469, 2291
BamHI	GGATCC	1 cut(s)	2740
BanI	GGYRCC	2 cut(s)	1685, 1737
BanII	GRGCYC	3 cut(s)	1287, 1384, 2756
BbrPI	CACGTG	1 cut(s)	1082
BbsI	GAAGAC	7 cut(s)	385, 923, 946, 1775, 1802, 1847, 2277
Bbv12I	GWGCWC	3 cut(s)	843, 2545, 2756
BbvI	GCAGC	6 cut(s)	565, 568, 1214, 1890, 1972, 2011
BccI	CCATC	4 cut(s)	545, 680, 2143, 2392
BceAI	ACGGC	1 cut(s)	1501
BciT130I	CCWGG	6 cut(s)	528, 1610, 1690, 1779, 2298, 2659
BcnI	CCSGG	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	376, 1415
BcuI	ACTAGT	1 cut(s)	1897
BfaI	CTAG	9 cut(s)	999, 1409, 1541, 1898, 2405, 2463, 2538, 2547, 2703
BfmI	CTRYAG	1 cut(s)	1658
BfoI	RGCGCY	1 cut(s)	1741
BfuAI	ACCTGC	3 cut(s)	388, 1106, 1504
BisI	GCNGC	8 cut(s)	405, 579, 582, 1203, 1904, 1986, 2025, 2678
BlnI	CCTAGG	1 cut(s)	998
BlsI	GCNGC	8 cut(s)	406, 580, 583, 1204, 1905, 1987, 2026, 2679
Bme1390I	CCNGG	7 cut(s)	133, 528, 1610, 1690, 1779, 2298, 2659
Bme18I	GGWCC	3 cut(s)	630, 1063, 1781
BmeT110I	CYCGRG	1 cut(s)	864
BmgT120I	GGNCC	5 cut(s)	130, 630, 1063, 1781, 2453
BmiI	GGNNCC	6 cut(s)	556, 631, 1687, 1739, 2347, 2742
BmrFI	CCNGG	7 cut(s)	133, 528, 1610, 1690, 1779, 2298, 2659
BmrI	ACTGGG	2 cut(s)	1067, 2538
BmsI	GCATC	5 cut(s)	416, 654, 1189, 1452, 2419
BmuI	ACTGGG	2 cut(s)	1067, 2538
BpiI	GAAGAC	7 cut(s)	385, 923, 946, 1775, 1802, 1847, 2277
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpmI	CTGGAG	1 cut(s)	1215
Bpu10I	CCTNAGC	2 cut(s)	2663, 2750
Bpu14I	TTCGAA	1 cut(s)	2520
BpuEI	CTTGAG	1 cut(s)	1250
BpuMI	CCSGG	1 cut(s)	133
Bsa29I	ATCGAT	1 cut(s)	816
BsaAI	YACGTR	2 cut(s)	1082, 2033
BsaBI	GATNNNNATC	1 cut(s)	2487
BsaHI	GRCGYC	1 cut(s)	1738
BsaJI	CCNNGG	7 cut(s)	709, 785, 863, 998, 1609, 1756, 2065
BsaWI	WCCGGW	4 cut(s)	49, 478, 1008, 1107
BsaXI	ACNNNNNCTCC	2 cut(s)	781, 811
Bsc4I	CCNNNNNNNGG	7 cut(s)	527, 786, 868, 1695, 2210, 2664, 2723
Bse1I	ACTGG	5 cut(s)	1073, 1687, 1823, 1926, 2533
Bse21I	CCTNAGG	3 cut(s)	1785, 1973, 2209
Bse3DI	GCAATG	3 cut(s)	1351, 1446, 1701
Bse8I	GATNNNNATC	1 cut(s)	2487
BseAI	TCCGGA	1 cut(s)	49
BseBI	CCWGG	6 cut(s)	528, 1610, 1690, 1779, 2298, 2659
BseCI	ATCGAT	1 cut(s)	816
BseDI	CCNNGG	7 cut(s)	709, 785, 863, 998, 1609, 1756, 2065
BseGI	GGATG	4 cut(s)	211, 719, 858, 2096
BseJI	GATNNNNATC	1 cut(s)	2487
BseLI	CCNNNNNNNGG	7 cut(s)	527, 786, 868, 1695, 2210, 2664, 2723
BseMI	GCAATG	3 cut(s)	1351, 1446, 1701
BseNI	ACTGG	5 cut(s)	1073, 1687, 1823, 1926, 2533
BseRI	GAGGAG	6 cut(s)	364, 388, 640, 698, 1218, 1268
BseSI	GKGCMC	1 cut(s)	2545
BseXI	GCAGC	6 cut(s)	565, 568, 1214, 1890, 1972, 2011
BseYI	CCCAGC	2 cut(s)	221, 1585
BsgI	GTGCAG	1 cut(s)	1482
Bsh1236I	CGCG	1 cut(s)	896
Bsh1285I	CGRYCG	1 cut(s)	894
BshFI	GGCC	9 cut(s)	131, 470, 490, 1469, 1925, 2291, 2454, 2515, 2668
BshNI	GGYRCC	2 cut(s)	1685, 1737
BshVI	ATCGAT	1 cut(s)	816
BsiEI	CGRYCG	1 cut(s)	894
BsiHKAI	GWGCWC	3 cut(s)	843, 2545, 2756
BsiHKCI	CYCGRG	1 cut(s)	864
BsiSI	CCGG	5 cut(s)	50, 133, 479, 1009, 1108
BslFI	GGGAC	3 cut(s)	1055, 1953, 2545
BslI	CCNNNNNNNGG	7 cut(s)	527, 786, 868, 1695, 2210, 2664, 2723
BsmAI	GTCTC	2 cut(s)	376, 1415
BsmFI	GGGAC	3 cut(s)	1055, 1953, 2545
BsmI	GAATGC	1 cut(s)	1117
BsnI	GGCC	9 cut(s)	131, 470, 490, 1469, 1925, 2291, 2454, 2515, 2668
BsoBI	CYCGRG	1 cut(s)	864
Bsp119I	TTCGAA	1 cut(s)	2520
Bsp1286I	GDGCHC	5 cut(s)	843, 1287, 1384, 2545, 2756
Bsp13I	TCCGGA	1 cut(s)	49
Bsp143I	GATC	7 cut(s)	166, 225, 891, 1351, 2380, 2482, 2740
Bsp19I	CCATGG	1 cut(s)	1756
Bsp68I	TCGCGA	1 cut(s)	896
BspACI	CCGC	6 cut(s)	404, 584, 626, 665, 1124, 2677
BspANI	GGCC	9 cut(s)	131, 470, 490, 1469, 1925, 2291, 2454, 2515, 2668
BspDI	ATCGAT	1 cut(s)	816
BspEI	TCCGGA	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	896
BspLI	GGNNCC	6 cut(s)	556, 631, 1687, 1739, 2347, 2742
BspMI	ACCTGC	3 cut(s)	388, 1106, 1504
BspPI	GGATC	6 cut(s)	174, 233, 2375, 2490, 2735, 2748
BspQI	GCTCTTC	1 cut(s)	684
BspT104I	TTCGAA	1 cut(s)	2520
BspT107I	GGYRCC	2 cut(s)	1685, 1737
BsrDI	GCAATG	3 cut(s)	1351, 1446, 1701
BsrI	ACTGG	5 cut(s)	1073, 1687, 1823, 1926, 2533
BssECI	CCNNGG	7 cut(s)	709, 785, 863, 998, 1609, 1756, 2065
BssMI	GATC	7 cut(s)	166, 225, 891, 1351, 2380, 2482, 2740
BssNI	GRCGYC	1 cut(s)	1738
BssT1I	CCWWGG	3 cut(s)	998, 1756, 2065
Bst2UI	CCWGG	6 cut(s)	528, 1610, 1690, 1779, 2298, 2659
Bst4CI	ACNGT	7 cut(s)	16, 73, 84, 370, 1510, 1624, 2332
Bst6I	CTCTTC	3 cut(s)	235, 684, 2356
BstACI	GRCGYC	1 cut(s)	1738
BstBAI	YACGTR	2 cut(s)	1082, 2033
BstBI	TTCGAA	1 cut(s)	2520
BstC8I	GCNNGC	2 cut(s)	1444, 1467
BstDSI	CCRYGG	2 cut(s)	785, 1756
BstEII	GGTNACC	2 cut(s)	611, 905
BstENI	CCTNNNNNAGG	1 cut(s)	2662
BstF5I	GGATG	4 cut(s)	211, 719, 858, 2096
BstFNI	CGCG	1 cut(s)	896
BstH2I	RGCGCY	1 cut(s)	1741
BstHHI	GCGC	2 cut(s)	431, 1740
BstKTI	GATC	7 cut(s)	169, 228, 894, 1354, 2383, 2485, 2743
BstMAI	GTCTC	2 cut(s)	376, 1415
BstMBI	GATC	7 cut(s)	166, 225, 891, 1351, 2380, 2482, 2740
BstMCI	CGRYCG	1 cut(s)	894
BstMWI	GCNNNNNNNGC	8 cut(s)	410, 962, 1121, 1379, 1448, 1475, 1922, 2674
BstNI	CCWGG	6 cut(s)	528, 1610, 1690, 1779, 2298, 2659
BstNSI	RCATGY	2 cut(s)	1277, 2414
BstPI	GGTNACC	2 cut(s)	611, 905
BstSCI	CCNGG	7 cut(s)	131, 526, 1608, 1688, 1777, 2296, 2657
BstSFI	CTRYAG	1 cut(s)	1658
BstSLI	GKGCMC	1 cut(s)	2545
BstUI	CGCG	1 cut(s)	896
BstV1I	GCAGC	6 cut(s)	565, 568, 1214, 1890, 1972, 2011
BstV2I	GAAGAC	7 cut(s)	385, 923, 946, 1775, 1802, 1847, 2277
BstX2I	RGATCY	4 cut(s)	166, 225, 2380, 2740
BstXI	CCANNNNNNTGG	1 cut(s)	1763
BstYI	RGATCY	4 cut(s)	166, 225, 2380, 2740
Bsu15I	ATCGAT	1 cut(s)	816
Bsu36I	CCTNAGG	3 cut(s)	1785, 1973, 2209
BsuRI	GGCC	9 cut(s)	131, 470, 490, 1469, 1925, 2291, 2454, 2515, 2668
BsuTUI	ATCGAT	1 cut(s)	816
BtgI	CCRYGG	2 cut(s)	785, 1756
BtsCI	GGATG	4 cut(s)	211, 719, 858, 2096
BtsI	GCAGTG	1 cut(s)	2438
BtsIMutI	CAGTG	5 cut(s)	1620, 1816, 1933, 2337, 2438
BtuMI	TCGCGA	1 cut(s)	896
BveI	ACCTGC	3 cut(s)	388, 1106, 1504
Cac8I	GCNNGC	2 cut(s)	1444, 1467
CaiI	CAGNNNCTG	1 cut(s)	659
CfoI	GCGC	2 cut(s)	431, 1740
Cfr13I	GGNCC	5 cut(s)	130, 630, 1063, 1781, 2453
ClaI	ATCGAT	1 cut(s)	816
CsiI	ACCWGGT	1 cut(s)	1688
Csp6I	GTAC	3 cut(s)	80, 798, 1686
CviQI	GTAC	3 cut(s)	80, 798, 1686
DinI	GGCGCC	1 cut(s)	1739
DpnI	GATC	7 cut(s)	168, 227, 893, 1353, 2382, 2484, 2742
DpnII	GATC	7 cut(s)	166, 225, 891, 1351, 2380, 2482, 2740
DraI	TTTAAA	1 cut(s)	2157
DraIII	CACNNNGTG	1 cut(s)	786
DrdI	GACNNNNNNGTC	1 cut(s)	2612
DseDI	GACNNNNNNGTC	1 cut(s)	2612
EaeI	YGGCCR	3 cut(s)	488, 1467, 2289
Eam1104I	CTCTTC	3 cut(s)	235, 684, 2356
EarI	CTCTTC	3 cut(s)	235, 684, 2356
Ecl136II	GAGCTC	1 cut(s)	2754
Eco130I	CCWWGG	3 cut(s)	998, 1756, 2065
Eco147I	AGGCCT	2 cut(s)	2515, 2668
Eco24I	GRGCYC	3 cut(s)	1287, 1384, 2756
Eco32I	GATATC	1 cut(s)	814
Eco47I	GGWCC	3 cut(s)	630, 1063, 1781
Eco53kI	GAGCTC	1 cut(s)	2754
Eco57I	CTGAAG	4 cut(s)	444, 753, 1242, 2445
Eco72I	CACGTG	1 cut(s)	1082
Eco81I	CCTNAGG	3 cut(s)	1785, 1973, 2209
Eco88I	CYCGRG	1 cut(s)	864
Eco91I	GGTNACC	2 cut(s)	611, 905
EcoICRI	GAGCTC	1 cut(s)	2754
EcoNI	CCTNNNNNAGG	1 cut(s)	2662
EcoO65I	GGTNACC	2 cut(s)	611, 905
EcoRI	GAATTC	1 cut(s)	2177
EcoRII	CCWGG	6 cut(s)	526, 1608, 1688, 1777, 2296, 2657
EcoRV	GATATC	1 cut(s)	814
EcoT14I	CCWWGG	3 cut(s)	998, 1756, 2065
EcoT38I	GRGCYC	3 cut(s)	1287, 1384, 2756
EgeI	GGCGCC	1 cut(s)	1739
EheI	GGCGCC	1 cut(s)	1739
ErhI	CCWWGG	3 cut(s)	998, 1756, 2065
FalI	AAGNNNNNCTT	8 cut(s)	530, 562, 894, 926, 1170, 1202, 1992, 2024
FaqI	GGGAC	3 cut(s)	1055, 1953, 2545
FauI	CCCGC	2 cut(s)	577, 619
Fnu4HI	GCNGC	8 cut(s)	405, 579, 582, 1203, 1904, 1986, 2025, 2678
FokI	GGATG	4 cut(s)	218, 726, 845, 2083
FriOI	GRGCYC	3 cut(s)	1287, 1384, 2756
Fsp4HI	GCNGC	8 cut(s)	405, 579, 582, 1203, 1904, 1986, 2025, 2678
FspBI	CTAG	9 cut(s)	999, 1409, 1541, 1898, 2405, 2463, 2538, 2547, 2703
GlaI	GCGC	2 cut(s)	430, 1739
GluI	GCNGC	8 cut(s)	405, 579, 582, 1203, 1904, 1986, 2025, 2678
GsaI	CCCAGC	2 cut(s)	225, 1589
GsuI	CTGGAG	1 cut(s)	1215
HaeII	RGCGCY	1 cut(s)	1741
HaeIII	GGCC	9 cut(s)	131, 470, 490, 1469, 1925, 2291, 2454, 2515, 2668
HapII	CCGG	5 cut(s)	50, 133, 479, 1009, 1108
HhaI	GCGC	2 cut(s)	431, 1740
Hin1I	GRCGYC	1 cut(s)	1738
Hin6I	GCGC	2 cut(s)	429, 1738
HinP1I	GCGC	2 cut(s)	429, 1738
HincII	GTYRAC	1 cut(s)	1618
HindII	GTYRAC	1 cut(s)	1618
HindIII	AAGCTT	2 cut(s)	746, 1237
HpaI	GTTAAC	1 cut(s)	1618
HpaII	CCGG	5 cut(s)	50, 133, 479, 1009, 1108
HphI	GGTGA	4 cut(s)	369, 749, 899, 2279
Hpy166II	GTNNAC	4 cut(s)	1618, 1850, 2195, 2543
Hpy8I	GTNNAC	4 cut(s)	1618, 1850, 2195, 2543
Hpy99I	CGWCG	2 cut(s)	563, 1359
HpyCH4III	ACNGT	7 cut(s)	16, 73, 84, 370, 1510, 1624, 2332
HpyCH4IV	ACGT	6 cut(s)	496, 759, 1081, 1852, 1882, 2032
HpyF10VI	GCNNNNNNNGC	8 cut(s)	410, 962, 1121, 1379, 1448, 1475, 1922, 2674
HpySE526I	ACGT	6 cut(s)	496, 759, 1081, 1852, 1882, 2032
Hsp92I	GRCGYC	1 cut(s)	1738
HspAI	GCGC	2 cut(s)	429, 1738
KasI	GGCGCC	1 cut(s)	1737
Kpn2I	TCCGGA	1 cut(s)	49
KpnI	GGTACC	1 cut(s)	1689
KspAI	GTTAAC	1 cut(s)	1618
Kzo9I	GATC	7 cut(s)	166, 225, 891, 1351, 2380, 2482, 2740
LguI	GCTCTTC	1 cut(s)	684
LmnI	GCTCC	3 cut(s)	1231, 2214, 2314
Lsp1109I	GCAGC	6 cut(s)	565, 568, 1214, 1890, 1972, 2011
LweI	GCATC	5 cut(s)	416, 654, 1189, 1452, 2419
MabI	ACCWGGT	1 cut(s)	1688
MaeI	CTAG	9 cut(s)	999, 1409, 1541, 1898, 2405, 2463, 2538, 2547, 2703
MaeII	ACGT	6 cut(s)	496, 759, 1081, 1852, 1882, 2032
MaeIII	GTNAC	5 cut(s)	611, 905, 1269, 2585, 2625
MalI	GATC	7 cut(s)	168, 227, 893, 1353, 2382, 2484, 2742
MboI	GATC	7 cut(s)	166, 225, 891, 1351, 2380, 2482, 2740
MfeI	CAATTG	2 cut(s)	408, 1170
MflI	RGATCY	4 cut(s)	166, 225, 2380, 2740
MhlI	GDGCHC	5 cut(s)	843, 1287, 1384, 2545, 2756
MlsI	TGGCCA	2 cut(s)	1469, 2291
MluNI	TGGCCA	2 cut(s)	1469, 2291
Mly113I	GGCGCC	1 cut(s)	1738
MlyI	GAGTC	6 cut(s)	473, 684, 913, 936, 1040, 1553
MmeI	TCCRAC	2 cut(s)	544, 1606
Mox20I	TGGCCA	2 cut(s)	1469, 2291
MroI	TCCGGA	1 cut(s)	49
MroXI	GAANNNNTTC	4 cut(s)	1854, 1949, 2004, 2350
MscI	TGGCCA	2 cut(s)	1469, 2291
Msp20I	TGGCCA	2 cut(s)	1469, 2291
MspA1I	CMGCKG	4 cut(s)	221, 1060, 1124, 1442
MspI	CCGG	5 cut(s)	50, 133, 479, 1009, 1108
MspR9I	CCNGG	7 cut(s)	133, 528, 1610, 1690, 1779, 2298, 2659
MunI	CAATTG	2 cut(s)	408, 1170
Mva1269I	GAATGC	1 cut(s)	1117
MvaI	CCWGG	6 cut(s)	528, 1610, 1690, 1779, 2298, 2659
MvnI	CGCG	1 cut(s)	896
MwoI	GCNNNNNNNGC	8 cut(s)	410, 962, 1121, 1379, 1448, 1475, 1922, 2674
NarI	GGCGCC	1 cut(s)	1738
NciI	CCSGG	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	1756
NdeII	GATC	7 cut(s)	166, 225, 891, 1351, 2380, 2482, 2740
NlaIV	GGNNCC	6 cut(s)	556, 631, 1687, 1739, 2347, 2742
NmuCI	GTSAC	2 cut(s)	905, 1269
NruI	TCGCGA	1 cut(s)	896
NspI	RCATGY	2 cut(s)	1277, 2414
NspV	TTCGAA	1 cut(s)	2520
PaqCI	CACCTGC	1 cut(s)	388
PceI	AGGCCT	2 cut(s)	2515, 2668
PciI	ACATGT	2 cut(s)	1273, 2410
PciSI	GCTCTTC	1 cut(s)	684
PcsI	WCGNNNNNNNCGW	1 cut(s)	493
PctI	GAATGC	1 cut(s)	1117
PdmI	GAANNNNTTC	4 cut(s)	1854, 1949, 2004, 2350
PfeI	GAWTC	7 cut(s)	740, 898, 977, 1931, 1937, 2140, 2236
PflFI	GACNNNGTC	1 cut(s)	761
PflMI	CCANNNNNTGG	1 cut(s)	786
PfoI	TCCNGGA	1 cut(s)	1777
PkrI	GCNGC	8 cut(s)	406, 580, 583, 1204, 1905, 1987, 2026, 2679
Ple19I	CGATCG	1 cut(s)	894
PleI	GAGTC	6 cut(s)	472, 684, 913, 936, 1039, 1552
PluTI	GGCGCC	1 cut(s)	1741
PmaCI	CACGTG	1 cut(s)	1082
PmlI	CACGTG	1 cut(s)	1082
PpsI	GAGTC	6 cut(s)	472, 684, 913, 936, 1039, 1552
Ppu21I	YACGTR	2 cut(s)	1082, 2033
PscI	ACATGT	2 cut(s)	1273, 2410
PshBI	ATTAAT	1 cut(s)	1677
Psp124BI	GAGCTC	1 cut(s)	2756
Psp6I	CCWGG	6 cut(s)	526, 1608, 1688, 1777, 2296, 2657
PspCI	CACGTG	1 cut(s)	1082
PspEI	GGTNACC	2 cut(s)	611, 905
PspFI	CCCAGC	2 cut(s)	221, 1585
PspGI	CCWGG	6 cut(s)	526, 1608, 1688, 1777, 2296, 2657
PspN4I	GGNNCC	6 cut(s)	556, 631, 1687, 1739, 2347, 2742
PspPI	GGNCC	5 cut(s)	130, 630, 1063, 1781, 2453
PstNI	CAGNNNCTG	1 cut(s)	659
PsuI	RGATCY	4 cut(s)	166, 225, 2380, 2740
PsyI	GACNNNGTC	1 cut(s)	761
PvuI	CGATCG	1 cut(s)	894
PvuII	CAGCTG	3 cut(s)	221, 1060, 1442
RgaI	GCGATCGC	1 cut(s)	894
RruI	TCGCGA	1 cut(s)	896
RsaI	GTAC	3 cut(s)	81, 799, 1687
RsaNI	GTAC	3 cut(s)	80, 798, 1686
SacI	GAGCTC	1 cut(s)	2756
SapI	GCTCTTC	1 cut(s)	684
SatI	GCNGC	8 cut(s)	405, 579, 582, 1203, 1904, 1986, 2025, 2678
Sau3AI	GATC	7 cut(s)	166, 225, 891, 1351, 2380, 2482, 2740
Sau96I	GGNCC	5 cut(s)	130, 630, 1063, 1781, 2453
SchI	GAGTC	6 cut(s)	473, 684, 913, 936, 1040, 1553
ScrFI	CCNGG	7 cut(s)	133, 528, 1610, 1690, 1779, 2298, 2659
SduI	GDGCHC	5 cut(s)	843, 1287, 1384, 2545, 2756
SexAI	ACCWGGT	1 cut(s)	1688
SfaAI	GCGATCGC	1 cut(s)	894
SfaNI	GCATC	5 cut(s)	416, 654, 1189, 1452, 2419
SfcI	CTRYAG	1 cut(s)	1658
SfoI	GGCGCC	1 cut(s)	1739
SfuI	TTCGAA	1 cut(s)	2520
SgfI	GCGATCGC	1 cut(s)	894
SinI	GGWCC	3 cut(s)	630, 1063, 1781
SmlI	CTYRAG	1 cut(s)	1265
SmoI	CTYRAG	1 cut(s)	1265
SpeI	ACTAGT	1 cut(s)	1897
SseBI	AGGCCT	2 cut(s)	2515, 2668
SsiI	CCGC	6 cut(s)	404, 584, 626, 665, 1124, 2677
SspDI	GGCGCC	1 cut(s)	1737
SspI	AATATT	3 cut(s)	295, 640, 2358
SspMI	CTAG	9 cut(s)	999, 1409, 1541, 1898, 2405, 2463, 2538, 2547, 2703
SstI	GAGCTC	1 cut(s)	2756
StuI	AGGCCT	2 cut(s)	2515, 2668
StyD4I	CCNGG	7 cut(s)	131, 526, 1608, 1688, 1777, 2296, 2657
StyI	CCWWGG	3 cut(s)	998, 1756, 2065
TaaI	ACNGT	7 cut(s)	16, 73, 84, 370, 1510, 1624, 2332
TaiI	ACGT	6 cut(s)	499, 762, 1084, 1855, 1885, 2035
TaqI	TCGA	7 cut(s)	276, 598, 816, 1153, 1287, 2138, 2520
TauI	GCSGC	2 cut(s)	407, 2680
TfiI	GAWTC	7 cut(s)	740, 898, 977, 1931, 1937, 2140, 2236
TscAI	CASTG	5 cut(s)	1627, 1823, 1933, 2337, 2445
TseFI	GTSAC	2 cut(s)	905, 1269
TseI	GCWGC	6 cut(s)	578, 581, 1202, 1903, 1985, 2024
Tsp45I	GTSAC	2 cut(s)	905, 1269
TspDTI	ATGAA	9 cut(s)	303, 847, 1502, 1580, 1842, 2170, 2190, 2267, 2541
TspGWI	ACGGA	5 cut(s)	547, 774, 1314, 1686, 2133
TspRI	CASTG	5 cut(s)	1627, 1823, 1933, 2337, 2445
Tth111I	GACNNNGTC	1 cut(s)	761
Van91I	CCANNNNNTGG	1 cut(s)	786
VneI	GTGCAC	1 cut(s)	2541
VpaK11BI	GGWCC	3 cut(s)	630, 1063, 1781
VspI	ATTAAT	1 cut(s)	1677
XagI	CCTNNNNNAGG	1 cut(s)	2662
XapI	RAATTY	7 cut(s)	330, 874, 1053, 1427, 2177, 2257, 2637
XbaI	TCTAGA	1 cut(s)	2462
XceI	RCATGY	2 cut(s)	1277, 2414
XmaJI	CCTAGG	1 cut(s)	998
XmnI	GAANNNNTTC	4 cut(s)	1854, 1949, 2004, 2350
XspI	CTAG	9 cut(s)	999, 1409, 1541, 1898, 2405, 2463, 2538, 2547, 2703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.