Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Forward (+)

15372545 .. 15375524

Gene Structure 2980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30119

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTTTGTAGATGCCAGTGATTCAGATTCACAGAAGAAGTTCCCTTCTAAGTCTTGTCTTCTAGGGTATGGGGCTGCCAAGATACAAGAGGATGCTCTTAGTTCTTTCAAGCTGCGTTACGTGAATACTTGGGGAACAGCTTCAATCACAAAATACTTTCATGGTCAACAGCCATCCTCTTCCAGAAAGCAATCACAGGATAATCTCATAGAAGAATCTTCTCCCCTGCCACCTTCAGGTAATGAGAACTACTCGGAGGTGAATGTAACTACGCCACAAATCGAGTTCCCTTATAAAGAAACTAGGATCAAGTATGCTGTGCCTAGTTTGCATCAACTGGAAGACAAAAAGGATTTGCTGAATGAGCAGAATCCATGTTGCTCTCCAAAAAATCCAAAAAATCAGGCACAGGATGATTTCACCCAAGGAAGTTTACTATCGTCAATCTCAGGGACTGAACTCTGCTTAGGAGAGAATCAAGGTCAACTAATAAAAAATGATTCTCGTGAAGAACCTTGCCTTAAAGCTGCAATGCCTGGTTTCAATAGACAGGAGCAGAAAAGGAAAACAGTGAAAGTCAAGGGAACATCTTCAATATTGAGATTCTTTAAGAACCAAGATCCATCTTGTGCACCCCGAAAGCTGGAACATGTTGAAAATACTGAAGATATTAGACTGCCACTATCTGTTGGCCCTCAGTCTAGAAGTAATAGTTCTTTGGATCACAATCAATCTGAGTTGTCAAAAGAAAGGCCTTTTGAAGAAACTGGGACTTCTAGTGCGCCTAGTTCAGCCCAATTTGAACAAAGAAGGGGAGTATGGAGTTACAATACTGACGAGATTGACCCCTCTGTCATTGATGAGTTACCACCCGAAATTGAAGAAGAAGTTCGTGCCTGGCTCAGGCCTCACAAGCGGCAAAATGTAGTGAAACGGGGTTCTAGTATTGCCGATTATTTCTTACCCACAAGGAATGCAGTCTATGACATTCTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

332

Amino Acids

37.41

Weight (kDa)

5.88

Isoelectric Point (pI)

68.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
AasI	GACNNNNNNGTC	1 cut(s)	851
AciI	CCGC	1 cut(s)	916
AclWI	GGATC	3 cut(s)	314, 614, 729
AcuI	CTGAAG	2 cut(s)	219, 684
AfiI	CCNNNNNNNGG	3 cut(s)	236, 643, 903
AflIII	ACRYGT	1 cut(s)	649
AgsI	TTSAA	8 cut(s)	109, 144, 544, 594, 656, 761, 803, 881
AjnI	CCWGG	2 cut(s)	535, 896
AluBI	AGCT	4 cut(s)	112, 140, 527, 643
AluI	AGCT	4 cut(s)	112, 140, 527, 643
Alw21I	GWGCWC	1 cut(s)	634
Alw44I	GTGCAC	1 cut(s)	630
AlwI	GGATC	3 cut(s)	314, 614, 729
AlwNI	CAGNNNCTG	1 cut(s)	455
AoxI	GGCC	3 cut(s)	691, 752, 905
ApaLI	GTGCAC	1 cut(s)	630
ApeKI	GCWGC	3 cut(s)	74, 112, 527
Asp700I	GAANNNNTTC	4 cut(s)	38, 139, 589, 888
AspLEI	GCGC	1 cut(s)	784
AspS9I	GGNCC	1 cut(s)	692
AsuHPI	GGTGA	2 cut(s)	271, 412
BaeGI	GKGCMC	1 cut(s)	634
BauI	CACGAG	1 cut(s)	504
BbsI	GAAGAC	2 cut(s)	50, 348
Bbv12I	GWGCWC	1 cut(s)	634
BbvI	GCAGC	3 cut(s)	61, 99, 514
BccI	CCATC	2 cut(s)	181, 631
BciT130I	CCWGG	2 cut(s)	537, 898
BfaI	CTAG	7 cut(s)	62, 303, 324, 702, 777, 786, 942
BisI	GCNGC	4 cut(s)	75, 113, 528, 917
BlsI	GCNGC	4 cut(s)	76, 114, 529, 918
Bme1390I	CCNGG	2 cut(s)	537, 898
BmgT120I	GGNCC	1 cut(s)	692
BmrFI	CCNGG	2 cut(s)	537, 898
BmrI	ACTGGG	1 cut(s)	777
BmsI	GCATC	2 cut(s)	82, 340
BmuI	ACTGGG	1 cut(s)	777
BpiI	GAAGAC	2 cut(s)	50, 348
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
Bpu10I	CCTNAGC	2 cut(s)	466, 902
BsaAI	YACGTR	1 cut(s)	121
BsaBI	GATNNNNATC	1 cut(s)	726
BsaJI	CCNNGG	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 643, 903
Bse1I	ACTGG	3 cut(s)	15, 342, 772
Bse3DI	GCAATG	1 cut(s)	537
Bse8I	GATNNNNATC	1 cut(s)	726
BseBI	CCWGG	2 cut(s)	537, 898
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	3 cut(s)	97, 173, 418
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	3 cut(s)	236, 643, 903
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	4 cut(s)	462, 710, 726, 916
BseNI	ACTGG	3 cut(s)	15, 342, 772
BseSI	GKGCMC	1 cut(s)	634
BseXI	GCAGC	3 cut(s)	61, 99, 514
BshFI	GGCC	3 cut(s)	693, 754, 907
BsiHKAI	GWGCWC	1 cut(s)	634
BslFI	GGGAC	2 cut(s)	466, 784
BslI	CCNNNNNNNGG	3 cut(s)	236, 643, 903
BsmFI	GGGAC	2 cut(s)	466, 784
BsmI	GAATGC	1 cut(s)	979
BsnI	GGCC	3 cut(s)	693, 754, 907
Bsp1286I	GDGCHC	1 cut(s)	634
Bsp143I	GATC	3 cut(s)	306, 619, 721
BspACI	CCGC	1 cut(s)	916
BspANI	GGCC	3 cut(s)	693, 754, 907
BspCNI	CTCAG	4 cut(s)	461, 709, 727, 915
BspPI	GGATC	3 cut(s)	314, 614, 729
BsrDI	GCAATG	1 cut(s)	537
BsrI	ACTGG	3 cut(s)	15, 342, 772
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	3 cut(s)	306, 619, 721
BssSI	CACGAG	1 cut(s)	504
BssT1I	CCWWGG	1 cut(s)	424
Bst2BI	CACGAG	1 cut(s)	504
Bst2UI	CCWGG	2 cut(s)	537, 898
Bst4CI	ACNGT	1 cut(s)	571
Bst6I	CTCTTC	1 cut(s)	184
BstBAI	YACGTR	1 cut(s)	121
BstDEI	CTNAG	7 cut(s)	48, 98, 448, 466, 696, 735, 902
BstENI	CCTNNNNNAGG	1 cut(s)	901
BstF5I	GGATG	3 cut(s)	97, 173, 418
BstHHI	GCGC	1 cut(s)	784
BstKTI	GATC	3 cut(s)	309, 622, 724
BstMBI	GATC	3 cut(s)	306, 619, 721
BstMWI	GCNNNNNNNGC	3 cut(s)	328, 364, 913
BstNI	CCWGG	2 cut(s)	537, 898
BstNSI	RCATGY	1 cut(s)	653
BstSCI	CCNGG	2 cut(s)	535, 896
BstSLI	GKGCMC	1 cut(s)	634
BstV1I	GCAGC	3 cut(s)	61, 99, 514
BstV2I	GAAGAC	2 cut(s)	50, 348
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BsuRI	GGCC	3 cut(s)	693, 754, 907
BtsCI	GGATG	3 cut(s)	97, 173, 418
BtsIMutI	CAGTG	2 cut(s)	22, 576
CaiI	CAGNNNCTG	1 cut(s)	455
CfoI	GCGC	1 cut(s)	784
Cfr13I	GGNCC	1 cut(s)	692
CviAII	CATG	3 cut(s)	161, 375, 650
DdeI	CTNAG	7 cut(s)	48, 98, 448, 466, 696, 735, 902
DpnI	GATC	3 cut(s)	308, 621, 723
DpnII	GATC	3 cut(s)	306, 619, 721
DrdI	GACNNNNNNGTC	1 cut(s)	851
DseDI	GACNNNNNNGTC	1 cut(s)	851
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	424
Eco147I	AGGCCT	2 cut(s)	754, 907
Eco57I	CTGAAG	2 cut(s)	219, 684
EcoNI	CCTNNNNNAGG	1 cut(s)	901
EcoRII	CCWGG	2 cut(s)	535, 896
EcoT14I	CCWWGG	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	3 cut(s)	164, 378, 653
FaiI	YATR	9 cut(s)	69, 162, 209, 294, 315, 376, 651, 820, 984
FaqI	GGGAC	2 cut(s)	466, 784
FatI	CATG	3 cut(s)	160, 374, 649
Fnu4HI	GCNGC	4 cut(s)	75, 113, 528, 917
FokI	GGATG	3 cut(s)	104, 160, 425
Fsp4HI	GCNGC	4 cut(s)	75, 113, 528, 917
FspBI	CTAG	7 cut(s)	62, 303, 324, 702, 777, 786, 942
GlaI	GCGC	1 cut(s)	783
GluI	GCNGC	4 cut(s)	75, 113, 528, 917
HaeIII	GGCC	3 cut(s)	693, 754, 907
HhaI	GCGC	1 cut(s)	784
Hin1II	CATG	3 cut(s)	164, 378, 653
Hin6I	GCGC	1 cut(s)	782
HinP1I	GCGC	1 cut(s)	782
HincII	GTYRAC	2 cut(s)	167, 485
HindII	GTYRAC	2 cut(s)	167, 485
HinfI	GANTC	7 cut(s)	20, 26, 215, 370, 475, 500, 603
HphI	GGTGA	2 cut(s)	271, 412
Hpy166II	GTNNAC	4 cut(s)	167, 434, 485, 632
Hpy188I	TCNGA	3 cut(s)	25, 256, 736
Hpy188III	TCNNGA	3 cut(s)	183, 506, 702
Hpy8I	GTNNAC	4 cut(s)	167, 434, 485, 632
HpyAV	CCTTC	3 cut(s)	54, 243, 804
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	4 cut(s)	331, 530, 632, 977
HpyF10VI	GCNNNNNNNGC	3 cut(s)	328, 364, 913
HpyF3I	CTNAG	7 cut(s)	48, 98, 448, 466, 696, 735, 902
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	3 cut(s)	164, 378, 653
HspAI	GCGC	1 cut(s)	782
Kzo9I	GATC	3 cut(s)	306, 619, 721
LmnI	GCTCC	1 cut(s)	553
Lsp1109I	GCAGC	3 cut(s)	61, 99, 514
LweI	GCATC	2 cut(s)	82, 340
MaeI	CTAG	7 cut(s)	62, 303, 324, 702, 777, 786, 942
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	4 cut(s)	116, 265, 824, 864
MalI	GATC	3 cut(s)	308, 621, 723
MboI	GATC	3 cut(s)	306, 619, 721
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	1 cut(s)	634
MluCI	AATT	2 cut(s)	797, 876
MnlI	CCTC	6 cut(s)	82, 187, 250, 705, 859, 918
MroXI	GAANNNNTTC	4 cut(s)	38, 139, 589, 888
MseI	TTAA	2 cut(s)	522, 609
MspR9I	CCNGG	2 cut(s)	537, 898
Mva1269I	GAATGC	1 cut(s)	979
MvaI	CCWGG	2 cut(s)	537, 898
MwoI	GCNNNNNNNGC	3 cut(s)	328, 364, 913
NdeII	GATC	3 cut(s)	306, 619, 721
NlaIII	CATG	3 cut(s)	164, 378, 653
NspI	RCATGY	1 cut(s)	653
PceI	AGGCCT	2 cut(s)	754, 907
PciI	ACATGT	1 cut(s)	649
PctI	GAATGC	1 cut(s)	979
PdmI	GAANNNNTTC	4 cut(s)	38, 139, 589, 888
PfeI	GAWTC	7 cut(s)	20, 26, 215, 370, 475, 500, 603
PkrI	GCNGC	4 cut(s)	76, 114, 529, 918
Ppu21I	YACGTR	1 cut(s)	121
PscI	ACATGT	1 cut(s)	649
PsiI	TTATAA	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	535, 896
PspGI	CCWGG	2 cut(s)	535, 896
PspPI	GGNCC	1 cut(s)	692
PstNI	CAGNNNCTG	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	619
SaqAI	TTAA	2 cut(s)	522, 609
SatI	GCNGC	4 cut(s)	75, 113, 528, 917
Sau3AI	GATC	3 cut(s)	306, 619, 721
Sau96I	GGNCC	1 cut(s)	692
ScrFI	CCNGG	2 cut(s)	537, 898
SduI	GDGCHC	1 cut(s)	634
SfaNI	GCATC	2 cut(s)	82, 340
Sse9I	AATT	2 cut(s)	797, 876
SseBI	AGGCCT	2 cut(s)	754, 907
SsiI	CCGC	1 cut(s)	916
SspI	AATATT	1 cut(s)	597
SspMI	CTAG	7 cut(s)	62, 303, 324, 702, 777, 786, 942
StuI	AGGCCT	2 cut(s)	754, 907
StyD4I	CCNGG	2 cut(s)	535, 896
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	1 cut(s)	571
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	1 cut(s)	282
TasI	AATT	2 cut(s)	797, 876
TauI	GCSGC	1 cut(s)	919
TfiI	GAWTC	7 cut(s)	20, 26, 215, 370, 475, 500, 603
Tru1I	TTAA	2 cut(s)	522, 609
Tru9I	TTAA	2 cut(s)	522, 609
TscAI	CASTG	2 cut(s)	22, 576
TseI	GCWGC	3 cut(s)	74, 112, 527
TspDTI	ATGAA	1 cut(s)	149
TspRI	CASTG	2 cut(s)	22, 576
VneI	GTGCAC	1 cut(s)	630
XagI	CCTNNNNNAGG	1 cut(s)	901
XbaI	TCTAGA	1 cut(s)	701
XceI	RCATGY	1 cut(s)	653
XmnI	GAANNNNTTC	4 cut(s)	38, 139, 589, 888
XspI	CTAG	7 cut(s)	62, 303, 324, 702, 777, 786, 942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.