AT5G47480

transport protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
19257027 .. 19263425
6399 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47480.1

Sequence Viewer

Length: 4053 bp
ATGGCTTCGACTGCTGATTTCCTCCTGGATGATCAAACGGACGAGGATTTCTTCGACAAACTTGTTGATGATTCCTATACTCCTACCGCTTCATCCTCTGCCAAGGAGCTGAAATTCGATGACGGTAGTGATTCCGATGACGCCAAAGCTTTTGCTAATCTCTCCGTCGTTGACGATGTTTTGGGTGATGGAGATGTCGCATTGAATGAAGCAGGTTTGGGGAACGATGTTGCAAACGAGGGTACAAGTGGTTCGGTGGGAAAAGAAGAGCCTTCTTCATCTATTGCTCCGGAAGCTGTTCAATTTGTCAACAGTGATGCAAATAGGTTAAGGGATGTTGATGTGGTGCGATCGGAGGTGGATGATATGGCACTAACTGAAACAGGAAAAGAGAGTAATATAGTCGATGGATCTGGGAGTCCTGGGGTTAAGGAGGTTGACTGGGGCTCGTTTTATGCAGATTCATCTGTAAATGACGGTGGTGGGTTTGGTTCATACTCTGATTTCTTCACTGAGTTGGATGCAACTGCAGGAAATGTACAGGGACAGGCGGAGGTAGCTGTGGCCACTGGAGGAAACTTAGTAGCCAATGATACAATTAACACAAGTGTTGGTTTAGATAATTCGGCAGGCTTTGAGCAACACCAGGGTCAAGTGCAACACGATTCTGGAAGCGGGCAGTATGTGGATAACAGTCAATCTTGGGAAAATCTCTATCCTGGATGGAAATATGATGCAAGTACTGGTCAATGGTATCAAGTTGATGGTCAGGATGCAACCGTTAATTCACAGGAGAGCTATATTAACTCAACAGGTAACTGGGAAAGCGTTGCTGCTGATAACTCGGATGTTGCTTATCTGAAACAGAGTACAACATCTGCAATGGCTGGCACAGCTGAGAGTGTGTCTACATGGAACCAGGTTTCACAAGTGGGCAATGGATATCCAGAACACATGGTATTTGACGCCCAGTATCCTGGATGGTACTATGACACAATTGCTCAAGAATGGCGCTCTCTGGACAGCTACAACCAGGCTTCCCAAACAACTGTAACTGGTCAAGCTCATGATCAGCAAGTTCAGAACGGTCATGCTCGTACAACTACGTATCACAATAATAGCCAGAGTAGTGTGTATGATGTTAACAACAAAAACCAGACATTCAAAGCGCAAGACTTTGCTATTCAGGGCCAACACGGAAGTTGGGACGAATCTTACTATGCCAACAATCAGCAGGCTGGAAACACTTGGCAACCAGTAAATGTAGGTAAGGCTGAGCCTGCGGTAACTTCTGATTCATTATCACGCTTCGGAGGAAACCAGCAAGTAAATAATTTGTACAGTACAGAATCTGTGGCTGAACAGTTTAAGCCAAATACGATTGGAGCCCAGAGCTTTATCCCTCAGCATATGAATGTGGCTAGTGCCACACAAAATGGACCATTGAGTTTCTCAAACGATTTGTATAATAGACAGCAATCGGTAGATCATGCTCAAAAGTCTTTTCAGAACAATCAGCTTTTCTCCCCAAGTGTGGGAAGATCATCTGATAGGCGTCCACCACACGCACTAGTCAGTTTTGGATTTGGTGGGAAGCTCATTGTTATGAAGGATAATAATGGTTCTCTGCAGAATACATCATTTGGGAGTCAGGGGATTGGGGGAAGCTCCATCACTGTCTTAAACTTGGCAGAAGTTATTTCTGGGAGTGCCTCTTATTCCAGTCCCGGGGAAGACTCTTTGAGCTACTTTCGTTGTCTGCATCAACAATCTCTTCCAGGCCCTTTGGTAGGGGGAAATGTTGGAAGTAAAGAGTTGCATAAGTGGATTGATGAGAGACTCTTGCATTGTGAATCTTCCAACATGGATTTTTCAAGAGGGAAACTCTTAAAGATGCTTCTTTCTTTGCTCAGAATATCTTGTCAGTATTATGGGAAACTCCGATCTCCTTTTGGCTCTGATGCATCGCAAAAGGAAACGGATACTCCAGAAGCAGCAGTTGCTAAACTTTTTGCATTTGCCAAGAAAGATGGCATCCAAAATGGTTATGCTCCTATTAGCCAATGCTTGCAGCATTTACCACCTGAATCGCAAATGCAAGTAACTGCTTCAGAGGTTCAGAATCTTCTGGCTTCTGGTAGAAAAATGGAGGCTCTACAATGTGCGCAAGAAGGCCATTTATGGGGACCGGCACTTGTCATCGCGGCTCAACTTGGGGATCAGTTCTATGTAGACACTGTGAAACAAATGGCCCTTCGCCAGCTGATACCCGGGTCACCTTTACGGACATTGTGCCTACTCGTTGCGGGACAACCAGCTGAAGTGTGTCCCACTGGAAGTAGTAGTAGCATGCTTGACAATTGGGAAGAGAATTTGGGTATAATAACTGCTAACAGAACCACAGATGACGACCTTGTGATTATTCATCTTGGAGATAGCATGTGGAAAGAAAGAGGGGAGATAATTGCGGCGCATATTTGCTATTTAATCGCAGACAAGAACTTTGATCCATACTCAGAAAGCGCCAGACTCTGCCTTGTCGGAGCGGACCATTGGAAATGTCCTCGAACATACGCAAGTCCAGATGCTATACAGAGAACAGAGTTATATGAATACTCTAAGACGCTGGGAAACTCTCAGTATATCCTGTTACCGTTTCAACCATATAAAATCATATATGCTCATATGCTGGCTGAAGTTGGTAAACTTTCTACTGCACAAAAGTACTGTCAAGCAGTAATAAGATGCCTCAAGACTAGCCGATCATCTGAAGTAGAAATGTGGAAGCAGTTTGCTTCATCTCTTGAAGAGAGAATCCGTAGCCATCAAGAGGGTGGGAATTTGGCCCCAGCAAAACTTGTTGGAAAGCTGCTGAACTCTTTGTGGGGGATGCCACCACCTGCACCACATTCAACAACTGGAAACCCGCAGGTAAATGAGTATCAACATCAACAGCAGGAAGCGGCTAAGTTATCATATAGTCAATCCGCTAATACAATGTCATCATTGATGCCACCTGCTTCAATTGAACCCGTACATGAGTGGGGTGGGAACGGGAGGACAATGGCAGCACATTCTAGAAGTGTATCAGAGCCAGATTTCAGTAGGACGCCAATACAGGATCAGACTGACTCCTCAAAAGACAAAGCTCCTGATGGGGTGACACAGGTGAAATCAACTCGGAAGGTGCCAAGTTCTCGGTTTAGCCGCTTTGGTATTGGCATATTGAAGAACACTGTAGGGAAGGTCTTCCCATCTCGATCATCTAATGAGGCAAAACTGGGTAATGAGAATCAATTCTACTATGACGATAACCTAAAGAGATGGGTGGAAAGAGGTGTGGAACCCCCAGCTGAGGAAGCTGCACTACCTCCTCCTCCAACGTCAGTCCCATTCCGAAGCAACTCATTGGGTCATGAAAACAAGTCTGAGATAAAGAACGAGATGTCTCCATCTAGTGGGAGCTGGAGTAGTGGCAGCCCAACTCCGTCAGAGAATTCTCCGGGAATCCCACCAGTCTCACAGGGCTCAAACCAATTCTCAGCTCGTGGACGTATGGGTGTGCGTGCAAGGTACGTTGACACCTATAATCAAGGCTCCTCGAGCATGTATCAGTCACCTCCCGTGCAATCTTCTAAACCACCGATTCCTGCGAAAGCAAAATTCTTTGTCCCAGCAGCACCGGCATCGTTTGCAAACGACCAGGTAATGGAATCGGTTAGTGCTGAAACCAGACAAGAGAACTCAGGAGATGAAGCAGTAGTAGGCTCTGCAGGCGCTCCAGGACCAAGCCAGGCTTCATTCCAGTCCCCGACACCATCTCCAATTGCAATGCAGAGATTTCCAAGTGTAGACAACATCAGAAGAAGTGGATCAGGAACAAGCCTTAATGGTGATCTTCCTCAGTCAGTATCAAGAAGAACAGCTTCATGGAGCGGAAGCGTCAACAGCTCGTCGTTTATGTCTCCAACGAGTGCATCAACATTCAGACCAAGCCCACTGAACAGTAGCAGTAGCAGCTTAGGAGAGGAGCTTCAGGAAGTTGAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1350

Amino Acids

145.88

Weight (kDa)

4.91

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec16 PF12932 522 - 645 1.8e-16 Vesicle coat trafficking protein Sec16 mid-region
TPR_Sec16 PF12931 706 - 962 1.6e-51 Sec16 Sec23-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 2908, 3025
Acc16I TGCGCA 1 cut(s) 2166
Acc36I ACCTGC 4 cut(s) 203, 2908, 2920, 3025
AccB1I GGYRCC 1 cut(s) 3187
AccB7I CCANNNNNTGG 2 cut(s) 3458, 3709
AccBSI CCGCTC 2 cut(s) 2546, 3936
AccI GTMKAC 3 cut(s) 908, 2232, 3852
AccII CGCG 1 cut(s) 2204
AccIII TCCGGA 1 cut(s) 289
AclWI GGATC 5 cut(s) 418, 2226, 2501, 3129, 3880
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 5 cut(s) 113, 2371, 2839, 3496, 3662
AcuI CTGAAG 5 cut(s) 2094, 2340, 2715, 2790, 4019
AcyI GRCGYC 4 cut(s) 141, 966, 1555, 3110
AfiI CCNNNNNNNGG 9 cut(s) 1534, 1535, 1728, 1790, 2182, 2830, 3355, 3458, 3709
AhlI ACTAGT 1 cut(s) 1570
AjuI GAANNNNNNNTTGG 2 cut(s) 3781, 3813
Alw26I GTCTC 4 cut(s) 1831, 3453, 3523, 3969
AlwI GGATC 5 cut(s) 418, 2226, 2501, 3129, 3880
AlwNI CAGNNNCTG 2 cut(s) 1352, 2532
Ama87I CYCGRG 3 cut(s) 1727, 2270, 3601
Aor13HI TCCGGA 1 cut(s) 289
AoxI GGCC 6 cut(s) 564, 1189, 1780, 2173, 2250, 2844
ApeKI GCWGC 9 cut(s) 833, 1994, 2071, 2869, 3068, 3362, 3477, 3677, 4017
ApoI RAATTY 5 cut(s) 113, 2371, 2839, 3496, 3662
ArsI GACNNNNNNTTYG 4 cut(s) 2486, 2518, 2713, 2745
Asp700I GAANNNNTTC 4 cut(s) 297, 3248, 3296, 3925
AspLEI GCGC 6 cut(s) 1014, 1171, 2167, 2473, 2525, 3779
AspS9I GGNCC 8 cut(s) 1189, 1439, 1781, 2186, 2251, 2548, 2845, 3785
AsuC2I CCSGG 5 cut(s) 1728, 1729, 2271, 2272, 3504
AsuHPI GGTGA 6 cut(s) 197, 2268, 3172, 3181, 3609, 3905
AvaI CYCGRG 3 cut(s) 1727, 2270, 3601
AvaII GGWCC 4 cut(s) 1439, 2186, 2548, 3785
BaeI ACNNNNGTAYC 2 cut(s) 2258, 2291
BalI TGGCCA 1 cut(s) 566
BanI GGYRCC 1 cut(s) 3187
BanII GRGCYC 3 cut(s) 449, 1390, 3530
BarI GAAGNNNNNNTAC 2 cut(s) 3351, 3383
BauI CACGAG 1 cut(s) 3546
BbsI GAAGAC 2 cut(s) 1740, 3241
BbvCI CCTCAGC 2 cut(s) 1404, 3354
BbvI GCAGC 9 cut(s) 820, 2006, 2083, 2856, 3080, 3349, 3489, 3689, 4029
BcgI CGANNNNNNTGC 2 cut(s) 3669, 3703
BciVI GTATCC 2 cut(s) 984, 1975
BclI TGATCA 2 cut(s) 31, 1069
BcnI CCSGG 5 cut(s) 1728, 1729, 2271, 2272, 3504
BcoDI GTCTC 4 cut(s) 1831, 3453, 3523, 3969
BcuI ACTAGT 1 cut(s) 1570
BfaI CTAG 5 cut(s) 1422, 1571, 2757, 3078, 3456
BfmI CTRYAG 4 cut(s) 528, 1628, 3237, 3771
BfoI RGCGCY 3 cut(s) 1015, 2526, 3780
BfuAI ACCTGC 4 cut(s) 203, 2908, 2920, 3025
BfuI GTATCC 2 cut(s) 984, 1975
BlpI GCTNAGC 1 cut(s) 1275
BmcAI AGTACT 2 cut(s) 742, 2726
Bme18I GGWCC 4 cut(s) 1439, 2186, 2548, 3785
BmeT110I CYCGRG 3 cut(s) 1727, 2270, 3601
BmgT120I GGNCC 8 cut(s) 1189, 1439, 1781, 2186, 2251, 2548, 2845, 3785
BmiI GGNNCC 7 cut(s) 917, 1387, 2187, 2847, 3189, 3345, 3598
BmrI ACTGGG 4 cut(s) 451, 829, 964, 3290
BmuI ACTGGG 4 cut(s) 451, 829, 964, 3290
BpiI GAAGAC 2 cut(s) 1740, 3241
BplI GAGNNNNNCTC 2 cut(s) 1869, 1901
BpmI CTGGAG 4 cut(s) 591, 1971, 3487, 3765
Bpu10I CCTNAGC 3 cut(s) 1404, 3354, 4021
Bpu1102I GCTNAGC 1 cut(s) 1275
BpuEI CTTGAG 2 cut(s) 987, 2735
BpuMI CCSGG 5 cut(s) 1728, 1729, 2271, 2272, 3504
BsaAI YACGTR 1 cut(s) 1107
BsaHI GRCGYC 4 cut(s) 141, 966, 1555, 3110
BsaJI CCNNGG 6 cut(s) 102, 422, 646, 1727, 1728, 2270
BsaWI WCCGGW 1 cut(s) 289
BsaXI ACNNNNNCTCC 6 cut(s) 1969, 1999, 3454, 3484, 3805, 3835
Bsc4I CCNNNNNNNGG 9 cut(s) 1534, 1535, 1728, 1790, 2182, 2830, 3355, 3458, 3709
Bse118I RCCGGY 2 cut(s) 2188, 3682
Bse3DI GCAATG 3 cut(s) 888, 943, 3837
BseAI TCCGGA 1 cut(s) 289
BseDI CCNNGG 6 cut(s) 102, 422, 646, 1727, 1728, 2270
BseLI CCNNNNNNNGG 9 cut(s) 1534, 1535, 1728, 1790, 2182, 2830, 3355, 3458, 3709
BseMI GCAATG 3 cut(s) 888, 943, 3837
BseRI GAGGAG 5 cut(s) 3124, 3363, 3366, 3589, 4043
BseXI GCAGC 9 cut(s) 820, 2006, 2083, 2856, 3080, 3349, 3489, 3689, 4029
BseYI CCCAGC 4 cut(s) 2626, 2848, 3349, 3673
BsgI GTGCAG 3 cut(s) 2700, 2886, 3348
Bsh1236I CGCG 1 cut(s) 2204
Bsh1285I CGRYCG 1 cut(s) 353
BshFI GGCC 6 cut(s) 566, 1191, 1782, 2175, 2252, 2846
BshNI GGYRCC 1 cut(s) 3187
BsiEI CGRYCG 1 cut(s) 353
BsiHKCI CYCGRG 3 cut(s) 1727, 2270, 3601
BsiSI CCGG 6 cut(s) 290, 1728, 2189, 2271, 3503, 3683
BslFI GGGAC 9 cut(s) 558, 1220, 1710, 2199, 2313, 2322, 3374, 3656, 3793
BslI CCNNNNNNNGG 9 cut(s) 1534, 1535, 1728, 1790, 2182, 2830, 3355, 3458, 3709
BsmAI GTCTC 4 cut(s) 1831, 3453, 3523, 3969
BsmFI GGGAC 9 cut(s) 558, 1220, 1710, 2199, 2313, 2322, 3374, 3656, 3793
BsnI GGCC 6 cut(s) 566, 1191, 1782, 2175, 2252, 2846
BsoBI CYCGRG 3 cut(s) 1727, 2270, 3601
Bsp1286I GDGCHC 3 cut(s) 449, 1390, 3530
Bsp13I TCCGGA 1 cut(s) 289
Bsp1407I TGTACA 2 cut(s) 538, 1338
Bsp1720I GCTNAGC 1 cut(s) 1275
BspANI GGCC 6 cut(s) 566, 1191, 1782, 2175, 2252, 2846
BspEI TCCGGA 1 cut(s) 289
BspFNI CGCG 1 cut(s) 2204
BspHI TCATGA 2 cut(s) 1066, 3415
BspLI GGNNCC 7 cut(s) 917, 1387, 2187, 2847, 3189, 3345, 3598
BspMAI CTGCAG 3 cut(s) 532, 1632, 3775
BspMI ACCTGC 4 cut(s) 203, 2908, 2920, 3025
BspPI GGATC 5 cut(s) 418, 2226, 2501, 3129, 3880
BspQI GCTCTTC 1 cut(s) 261
BspT107I GGYRCC 1 cut(s) 3187
BsrBI CCGCTC 2 cut(s) 2546, 3936
BsrDI GCAATG 3 cut(s) 888, 943, 3837
BsrFI RCCGGY 2 cut(s) 2188, 3682
BsrGI TGTACA 2 cut(s) 538, 1338
BssAI RCCGGY 2 cut(s) 2188, 3682
BssECI CCNNGG 6 cut(s) 102, 422, 646, 1727, 1728, 2270
BssNI GRCGYC 4 cut(s) 141, 966, 1555, 3110
BssSI CACGAG 1 cut(s) 3546
BssT1I CCWWGG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 3546
Bst6I CTCTTC 4 cut(s) 261, 1779, 2361, 2802
BstACI GRCGYC 4 cut(s) 141, 966, 1555, 3110
BstAPI GCANNNNNTGC 2 cut(s) 2000, 3692
BstAUI TGTACA 2 cut(s) 538, 1338
BstBAI YACGTR 1 cut(s) 1107
BstEII GGTNACC 1 cut(s) 2274
BstENI CCTNNNNNAGG 1 cut(s) 1788
BstFNI CGCG 1 cut(s) 2204
BstH2I RGCGCY 3 cut(s) 1015, 2526, 3780
BstHHI GCGC 6 cut(s) 1014, 1171, 2167, 2473, 2525, 3779
BstMAI GTCTC 4 cut(s) 1831, 3453, 3523, 3969
BstMCI CGRYCG 1 cut(s) 353
BstNSI RCATGY 3 cut(s) 2353, 2443, 3610
BstPI GGTNACC 1 cut(s) 2274
BstSFI CTRYAG 4 cut(s) 528, 1628, 3237, 3771
BstSNI TACGTA 1 cut(s) 1107
BstUI CGCG 1 cut(s) 2204
BstV1I GCAGC 9 cut(s) 820, 2006, 2083, 2856, 3080, 3349, 3489, 3689, 4029
BstV2I GAAGAC 2 cut(s) 1740, 3241
BstX2I RGATCY 1 cut(s) 410
BstXI CCANNNNNNTGG 1 cut(s) 977
BstYI RGATCY 1 cut(s) 410
BsuI GTATCC 2 cut(s) 984, 1975
BsuRI GGCC 6 cut(s) 566, 1191, 1782, 2175, 2252, 2846
BtgZI GCGATG 2 cut(s) 1950, 2185
BtsIMutI CAGTG 8 cut(s) 319, 510, 567, 1674, 2235, 2331, 3234, 3998
BveI ACCTGC 4 cut(s) 203, 2908, 2920, 3025
CaiI CAGNNNCTG 2 cut(s) 1352, 2532
CciI TCATGA 2 cut(s) 1066, 3415
CfoI GCGC 6 cut(s) 1014, 1171, 2167, 2473, 2525, 3779
Cfr10I RCCGGY 2 cut(s) 2188, 3682
Cfr13I GGNCC 8 cut(s) 1189, 1439, 1781, 2186, 2251, 2548, 2845, 3785
Cfr9I CCCGGG 2 cut(s) 1727, 2270
CseI GACGC 6 cut(s) 149, 974, 1544, 2632, 3118, 3931
CsiI ACCWGGT 2 cut(s) 918, 3702
EaeI YGGCCR 1 cut(s) 564
Eam1104I CTCTTC 4 cut(s) 261, 1779, 2361, 2802
EarI CTCTTC 4 cut(s) 261, 1779, 2361, 2802
EciI GGCGGA 1 cut(s) 566
Eco105I TACGTA 1 cut(s) 1107
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 3 cut(s) 449, 1390, 3530
Eco32I GATATC 1 cut(s) 944
Eco47I GGWCC 4 cut(s) 1439, 2186, 2548, 3785
Eco57I CTGAAG 5 cut(s) 2094, 2340, 2715, 2790, 4019
Eco88I CYCGRG 3 cut(s) 1727, 2270, 3601
Eco91I GGTNACC 1 cut(s) 2274
EcoNI CCTNNNNNAGG 1 cut(s) 1788
EcoO109I RGGNCCY 1 cut(s) 1781
EcoO65I GGTNACC 1 cut(s) 2274
EcoRI GAATTC 1 cut(s) 3496
EcoRV GATATC 1 cut(s) 944
EcoT14I CCWWGG 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 1966
EcoT38I GRGCYC 3 cut(s) 449, 1390, 3530
ErhI CCWWGG 1 cut(s) 102
FalI AAGNNNNNCTT 4 cut(s) 3781, 3813, 3910, 3942
FaqI GGGAC 9 cut(s) 558, 1220, 1710, 2199, 2313, 2322, 3374, 3656, 3793
FauI CCCGC 3 cut(s) 668, 2299, 2934
FauNDI CATATG 2 cut(s) 1410, 2685
FbaI TGATCA 2 cut(s) 31, 1069
FblI GTMKAC 3 cut(s) 908, 2232, 3852
FriOI GRGCYC 3 cut(s) 449, 1390, 3530
FspBI CTAG 5 cut(s) 1422, 1571, 2757, 3078, 3456
FspI TGCGCA 1 cut(s) 2166
GlaI GCGC 6 cut(s) 1013, 1170, 2166, 2472, 2524, 3778
GsaI CCCAGC 4 cut(s) 2630, 2852, 3353, 3677
GsuI CTGGAG 4 cut(s) 591, 1971, 3487, 3765
HaeII RGCGCY 3 cut(s) 1015, 2526, 3780
HaeIII GGCC 6 cut(s) 566, 1191, 1782, 2175, 2252, 2846
HapII CCGG 6 cut(s) 290, 1728, 2189, 2271, 3503, 3683
HgaI GACGC 6 cut(s) 149, 974, 1544, 2632, 3118, 3931
HhaI GCGC 6 cut(s) 1014, 1171, 2167, 2473, 2525, 3779
Hin1I GRCGYC 4 cut(s) 141, 966, 1555, 3110
Hin6I GCGC 6 cut(s) 1012, 1169, 2165, 2471, 2523, 3777
HinP1I GCGC 6 cut(s) 1012, 1169, 2165, 2471, 2523, 3777
HincII GTYRAC 6 cut(s) 172, 310, 439, 1144, 3580, 3946
HindII GTYRAC 6 cut(s) 172, 310, 439, 1144, 3580, 3946
HindIII AAGCTT 1 cut(s) 147
HpaI GTTAAC 1 cut(s) 1144
HpaII CCGG 6 cut(s) 290, 1728, 2189, 2271, 3503, 3683
HphI GGTGA 6 cut(s) 197, 2268, 3172, 3181, 3609, 3905
Hpy99I CGWCG 2 cut(s) 170, 3958
HpyAV CCTTC 6 cut(s) 282, 1603, 2165, 2264, 3178, 3238
HpyCH4IV ACGT 4 cut(s) 1106, 3383, 3553, 3576
HpySE526I ACGT 4 cut(s) 1106, 3383, 3553, 3576
Hsp92I GRCGYC 4 cut(s) 141, 966, 1555, 3110
HspAI GCGC 6 cut(s) 1012, 1169, 2165, 2471, 2523, 3777
Kpn2I TCCGGA 1 cut(s) 289
Ksp22I TGATCA 2 cut(s) 31, 1069
KspAI GTTAAC 1 cut(s) 1144
LguI GCTCTTC 1 cut(s) 261
Lsp1109I GCAGC 9 cut(s) 820, 2006, 2083, 2856, 3080, 3349, 3489, 3689, 4029
MabI ACCWGGT 2 cut(s) 918, 3702
MaeI CTAG 5 cut(s) 1422, 1571, 2757, 3078, 3456
MaeII ACGT 4 cut(s) 1106, 3383, 3553, 3576
MaeIII GTNAC 8 cut(s) 815, 1051, 1285, 2101, 2274, 2649, 3160, 3615
MbiI CCGCTC 2 cut(s) 2546, 3936
MfeI CAATTG 4 cut(s) 996, 2359, 3024, 3825
MflI RGATCY 1 cut(s) 410
MhlI GDGCHC 3 cut(s) 449, 1390, 3530
MlsI TGGCCA 1 cut(s) 566
MluNI TGGCCA 1 cut(s) 566
MlyI GAGTC 6 cut(s) 427, 1657, 1730, 1833, 2523, 3125
MmeI TCCRAC 7 cut(s) 498, 1783, 1884, 2521, 2842, 3404, 3992
Mox20I TGGCCA 1 cut(s) 566
Mph1103I ATGCAT 1 cut(s) 1966
MroI TCCGGA 1 cut(s) 289
MroXI GAANNNNTTC 4 cut(s) 297, 3248, 3296, 3925
MscI TGGCCA 1 cut(s) 566
MslI CAYNNNNRTG 2 cut(s) 1413, 1604
Msp20I TGGCCA 1 cut(s) 566
MspA1I CMGCKG 4 cut(s) 896, 2263, 2318, 3353
MspI CCGG 6 cut(s) 290, 1728, 2189, 2271, 3503, 3683
MunI CAATTG 4 cut(s) 996, 2359, 3024, 3825
MvnI CGCG 1 cut(s) 2204
NciI CCSGG 5 cut(s) 1728, 1729, 2271, 2272, 3504
NdeI CATATG 2 cut(s) 1410, 2685
NlaIV GGNNCC 7 cut(s) 917, 1387, 2187, 2847, 3189, 3345, 3598
NmuCI GTSAC 3 cut(s) 2274, 3160, 3615
NsbI TGCGCA 1 cut(s) 2166
NsiI ATGCAT 1 cut(s) 1966
NspI RCATGY 3 cut(s) 2353, 2443, 3610
PaeI GCATGC 1 cut(s) 2353
PaeR7I CTCGAG 1 cut(s) 3601
PagI TCATGA 2 cut(s) 1066, 3415
PaqCI CACCTGC 2 cut(s) 2908, 3025
PciSI GCTCTTC 1 cut(s) 261
PdmI GAANNNNTTC 4 cut(s) 297, 3248, 3296, 3925
PflMI CCANNNNNTGG 2 cut(s) 3458, 3709
PfoI TCCNGGA 5 cut(s) 24, 718, 976, 3502, 3781
Ple19I CGATCG 1 cut(s) 353
PleI GAGTC 6 cut(s) 426, 1656, 1730, 1833, 2523, 3125
PpsI GAGTC 6 cut(s) 426, 1656, 1730, 1833, 2523, 3125
Ppu21I YACGTR 1 cut(s) 1107
PspEI GGTNACC 1 cut(s) 2274
PspFI CCCAGC 4 cut(s) 2626, 2848, 3349, 3673
PspN4I GGNNCC 7 cut(s) 917, 1387, 2187, 2847, 3189, 3345, 3598
PspPI GGNCC 8 cut(s) 1189, 1439, 1781, 2186, 2251, 2548, 2845, 3785
PspXI VCTCGAGB 1 cut(s) 3601
PsrI GAACNNNNNNTAC 2 cut(s) 235, 267
PstI CTGCAG 3 cut(s) 532, 1632, 3775
PstNI CAGNNNCTG 2 cut(s) 1352, 2532
PsuI RGATCY 1 cut(s) 410
PvuI CGATCG 1 cut(s) 353
PvuII CAGCTG 4 cut(s) 896, 2263, 2318, 3353
RseI CAYNNNNRTG 2 cut(s) 1413, 1604
SapI GCTCTTC 1 cut(s) 261
Sau96I GGNCC 8 cut(s) 1189, 1439, 1781, 2186, 2251, 2548, 2845, 3785
ScaI AGTACT 2 cut(s) 742, 2726
SchI GAGTC 6 cut(s) 427, 1657, 1730, 1833, 2523, 3125
SduI GDGCHC 3 cut(s) 449, 1390, 3530
SexAI ACCWGGT 2 cut(s) 918, 3702
SfcI CTRYAG 4 cut(s) 528, 1628, 3237, 3771
Sfr274I CTCGAG 1 cut(s) 3601
SinI GGWCC 4 cut(s) 1439, 2186, 2548, 3785
SlaI CTCGAG 1 cut(s) 3601
SmaI CCCGGG 2 cut(s) 1729, 2272
SmiMI CAYNNNNRTG 2 cut(s) 1413, 1604
SmlI CTYRAG 3 cut(s) 1002, 2750, 3601
SmoI CTYRAG 3 cut(s) 1002, 2750, 3601
SnaBI TACGTA 1 cut(s) 1107
SpeI ACTAGT 1 cut(s) 1570
SphI GCATGC 1 cut(s) 2353
SspMI CTAG 5 cut(s) 1422, 1571, 2757, 3078, 3456
StyI CCWWGG 1 cut(s) 102
TaiI ACGT 4 cut(s) 1109, 3386, 3556, 3579
TaqI TCGA 7 cut(s) 8, 54, 117, 405, 2566, 3259, 3602
TatI WGTACW 6 cut(s) 538, 740, 869, 1338, 1343, 2724
TauI GCSGC 4 cut(s) 2207, 2471, 2966, 3210
TscAI CASTG 8 cut(s) 319, 517, 574, 1681, 2242, 2338, 3241, 4005
TseFI GTSAC 3 cut(s) 2274, 3160, 3615
TseI GCWGC 9 cut(s) 833, 1994, 2071, 2869, 3068, 3362, 3477, 3677, 4017
Tsp45I GTSAC 3 cut(s) 2274, 3160, 3615
TspGWI ACGGA 7 cut(s) 53, 154, 1212, 1994, 2299, 2807, 3477
TspMI CCCGGG 2 cut(s) 1727, 2270
TspRI CASTG 8 cut(s) 319, 517, 574, 1681, 2242, 2338, 3241, 4005
Van91I CCANNNNNTGG 2 cut(s) 3458, 3709
VpaK11BI GGWCC 4 cut(s) 1439, 2186, 2548, 3785
XagI CCTNNNNNAGG 1 cut(s) 1788
XapI RAATTY 5 cut(s) 113, 2371, 2839, 3496, 3662
XbaI TCTAGA 1 cut(s) 3077
XceI RCATGY 3 cut(s) 2353, 2443, 3610
XcmI CCANNNNNNNNNTGG 1 cut(s) 2831
XhoI CTCGAG 1 cut(s) 3601
XmaI CCCGGG 2 cut(s) 1727, 2270
XmiI GTMKAC 3 cut(s) 908, 2232, 3852
XmnI GAANNNNTTC 4 cut(s) 297, 3248, 3296, 3925
XspI CTAG 5 cut(s) 1422, 1571, 2757, 3078, 3456
ZrmI AGTACT 2 cut(s) 742, 2726
Zsp2I ATGCAT 1 cut(s) 1966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.