Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001182

Physical Location & Seq

Genomic Coordinates Reverse (-)

19919506 .. 19919979

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG217500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGTCACAAGGTGTCAGTAACCAAGGTCAAGAGGGTAGCTGGTCTCAGTTATAATAATTACAATAAGCAAGTTTCAAATATGTGGCAACCTGAGGCTGTAGCTACCAGCGAGTATTTTCCAAGTTTTGGAGGAAACCAACAGTTGGGTAATTCATTAGCTTCTATGGTTAACAATGATCAGCAGAAGCCGGTCAGCTCTTTCGGAGCAGTTCCTTTGTATAACAAAGCAAGTCAGGGTCATGGTGAGGCTAATGGGACTTTTGGGTTCCAAAGTTTCACCCCAGGTGGAAACTTTAACCAGCAGTTTAATCAAGGAAATGCAAAGCAGAATGAACAAACCCAATTTTCAGAGGATTACTATGGCAGTCAGAAACTGAAAATTATTCGCAACAATCTTTCCAGAGTGGCAATCAGTTTACATATGCTCCAACTGTTGGAAGATCTTCTGCCGGGCGTCCTCCACATGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec16 Sec16_C

Protein Analysis

157

Amino Acids

17.33

Weight (kDa)

9.19

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47480 AT5G47480 AT5G47490 AT5G47490 AT5G47490
fragaria_vesca	FvH4_5g19020 FvH4_5g19020 FvH4_5g19020 FvH4_5g19020 FvH4_5g19020 FvH4_5g19020 FvH4_7g11010 FvH4_7g11010 FvH4_7g11010
malus_domestica	MD00G1171200.v1.1 MD02G1211000.v1.1 MD06G1059400.v1.1 MD07G1114300.v1.1
prunus_persica	Prupe.2G136900_v2.0.a1 Prupe.2G136900_v2.0.a1 Prupe.5G070400_v2.0.a1 Prupe.5G070400_v2.0.a1 Prupe.5G070400_v2.0.a1
pyrus_communis	pycom02g17400 pycom06g04940 pycom07g09920 pycom976g00050
rosa_chinensis	RchiOBHm_Chr1g0349011 RchiOBHm_Chr7g0203401 RchiOBHm_Chr7g0203431
rosa_laevigata	RLG00000003530 RLG00000028612
rosa_multiflora	Rmu_co7982226.1_g000001 Rmu_co8315573.1_g000001 Rmu_sc0003347.1_g000007 Rmu_sc0003347.1_g000018 Rmu_sc0005723.1_g000007 Rmu_sc0009855.1_g000009 Rmu_sc0012988.1_g000001 Rmu_sc0018299.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253830 Rroxscaffold_4G00306240
rosa_rugosa	Rorug01G0199400 Rorug07G0075900
rosa_samantha	Rh1AG217000 Rh1BG182500 Rh1CG201300 Rh1DG212500 Rh7AG205400 Rh7BG205300 Rh7CG216800 Rh7CG217500 Rh7DG212100 Rh7DG212600
rosa_wichuraiana	Rw0G005400 Rw1G018450 Rw7G017950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
AccB7I	CCANNNNNTGG	3 cut(s)	128, 145, 436
AcyI	GRCGYC	1 cut(s)	456
AdeI	CACNNNGTG	1 cut(s)	13
AfiI	CCNNNNNNNGG	3 cut(s)	128, 145, 436
AgsI	TTSAA	1 cut(s)	78
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	4 cut(s)	41, 104, 161, 198
AluI	AGCT	4 cut(s)	41, 104, 161, 198
Alw26I	GTCTC	1 cut(s)	50
AlwNI	CAGNNNCTG	1 cut(s)	376
Asp700I	GAANNNNTTC	1 cut(s)	444
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	2 cut(s)	257, 271
AxyI	CCTNAGG	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	285
BclI	TGATCA	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	472
BfmI	CTRYAG	1 cut(s)	99
BglII	AGATCT	1 cut(s)	442
Bme1390I	CCNGG	2 cut(s)	285, 453
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	2 cut(s)	285, 453
BpuMI	CCSGG	1 cut(s)	453
BsaHI	GRCGYC	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	24, 283
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 145, 436
Bse118I	RCCGGY	1 cut(s)	190
Bse21I	CCTNAGG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	24, 283
BseLI	CCNNNNNNNGG	3 cut(s)	128, 145, 436
BseMII	CTCAG	2 cut(s)	61, 84
BsiSI	CCGG	2 cut(s)	191, 452
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	3 cut(s)	128, 145, 436
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	271
Bso31I	GGTCTC	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	178, 442
BspCNI	CTCAG	2 cut(s)	60, 85
BspLI	GGNNCC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	24, 283
BssMI	GATC	2 cut(s)	178, 442
BssNI	GRCGYC	1 cut(s)	456
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	144, 435
BstACI	GRCGYC	1 cut(s)	456
BstDEI	CTNAG	2 cut(s)	47, 93
BstKTI	GATC	2 cut(s)	181, 445
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	2 cut(s)	178, 442
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	2 cut(s)	283, 451
BstSFI	CTRYAG	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
Bsu36I	CCTNAGG	1 cut(s)	93
CaiI	CAGNNNCTG	1 cut(s)	376
Cfr10I	RCCGGY	1 cut(s)	190
CseI	GACGC	1 cut(s)	445
CviAII	CATG	2 cut(s)	242, 466
CviJI	RGCY	7 cut(s)	41, 98, 104, 161, 190, 198, 251
CviKI_1	RGCY	7 cut(s)	41, 98, 104, 161, 190, 198, 251
DdeI	CTNAG	2 cut(s)	47, 93
DpnI	GATC	2 cut(s)	180, 444
DpnII	GATC	2 cut(s)	178, 442
DraIII	CACNNNGTG	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	50
Eco81I	CCTNAGG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	2 cut(s)	245, 469
FaiI	YATR	9 cut(s)	54, 83, 167, 222, 243, 363, 423, 425, 467
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	2 cut(s)	241, 465
FauNDI	CATATG	1 cut(s)	423
FbaI	TGATCA	1 cut(s)	178
FspBI	CTAG	1 cut(s)	472
HapII	CCGG	2 cut(s)	191, 452
HgaI	GACGC	1 cut(s)	445
Hin1I	GRCGYC	1 cut(s)	456
Hin1II	CATG	2 cut(s)	245, 469
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HpaI	GTTAAC	1 cut(s)	172
HpaII	CCGG	2 cut(s)	191, 452
HphI	GGTGA	2 cut(s)	257, 271
Hpy166II	GTNNAC	2 cut(s)	172, 419
Hpy188I	TCNGA	3 cut(s)	206, 352, 372
Hpy188III	TCNNGA	2 cut(s)	31, 402
Hpy8I	GTNNAC	2 cut(s)	172, 419
HpyCH4III	ACNGT	2 cut(s)	144, 435
HpyCH4V	TGCA	1 cut(s)	323
HpyF3I	CTNAG	2 cut(s)	47, 93
Hsp92I	GRCGYC	1 cut(s)	456
Hsp92II	CATG	2 cut(s)	245, 469
Ksp22I	TGATCA	1 cut(s)	178
KspAI	GTTAAC	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	178, 442
LmnI	GCTCC	2 cut(s)	206, 432
MaeI	CTAG	1 cut(s)	472
MaeIII	GTNAC	2 cut(s)	5, 19
MalI	GATC	2 cut(s)	180, 444
MboI	GATC	2 cut(s)	178, 442
MboII	GAAGA	2 cut(s)	437, 452
MflI	RGATCY	1 cut(s)	442
MluCI	AATT	4 cut(s)	58, 151, 344, 381
MmeI	TCCRAC	2 cut(s)	417, 454
MnlI	CCTC	6 cut(s)	27, 88, 125, 241, 346, 470
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	3 cut(s)	171, 297, 309
MspI	CCGG	2 cut(s)	191, 452
MspR9I	CCNGG	2 cut(s)	285, 453
MvaI	CCWGG	1 cut(s)	285
NciI	CCSGG	1 cut(s)	453
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	2 cut(s)	178, 442
NlaIII	CATG	2 cut(s)	245, 469
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	444
PflMI	CCANNNNNTGG	3 cut(s)	128, 145, 436
PsiI	TTATAA	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	269
PstNI	CAGNNNCTG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	442
SaqAI	TTAA	3 cut(s)	171, 297, 309
Sau3AI	GATC	2 cut(s)	178, 442
ScrFI	CCNGG	2 cut(s)	285, 453
SetI	ASST	8 cut(s)	15, 30, 43, 94, 106, 163, 200, 289
SfcI	CTRYAG	1 cut(s)	99
Sse9I	AATT	4 cut(s)	58, 151, 344, 381
SspMI	CTAG	1 cut(s)	472
StyD4I	CCNGG	2 cut(s)	283, 451
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	2 cut(s)	144, 435
TasI	AATT	4 cut(s)	58, 151, 344, 381
Tru1I	TTAA	3 cut(s)	171, 297, 309
Tru9I	TTAA	3 cut(s)	171, 297, 309
TseFI	GTSAC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	144, 348
Van91I	CCANNNNNTGG	3 cut(s)	128, 145, 436
XceI	RCATGY	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.