Rmu_co7982226.1_g000001

Protein transport protein sec16

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7982226.1
Physical Location & Seq
Reverse (-)
83 .. 469
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7982226.1_g000001.1.cds

Sequence Viewer

Length: 387 bp
atggttaacaaggatcagcagaagttcggagcagttcctttgtataacaaagcaagtcagggtcatggtgaggctaatgggactgttgggttccaaagttttgccccaggtggaaactttaaccagcagtttaatcaaggaaatgcaaagcagaatgaacaaacccaattttcagaggattactatggcagtcagaaacctgtaaattattcacaacaatctttccagagtggcaatcagtttacatatgctccaactgttggaagatcttctgccgggcgtcctccacatgccttagtaacttttggatttggtggaaaactcattgtgatgaaggacagtagtagtcttgggaactcttcctatggaagccaggtgaggctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

13.81

Weight (kDa)

9.48

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 260
AclWI GGATC 1 cut(s) 21
AcyI GRCGYC 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 260
AjnI CCWGG 2 cut(s) 106, 372
AlwI GGATC 1 cut(s) 21
Asp700I GAANNNNTTC 1 cut(s) 268
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 80
BciT130I CCWGG 2 cut(s) 108, 374
BcnI CCSGG 1 cut(s) 277
BglII AGATCT 1 cut(s) 266
Bme1390I CCNGG 3 cut(s) 108, 277, 374
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 3 cut(s) 108, 277, 374
BpuMI CCSGG 1 cut(s) 277
BsaHI GRCGYC 1 cut(s) 280
BsaJI CCNNGG 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 260
BseBI CCWGG 2 cut(s) 108, 374
BseDI CCNNGG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 260
BsiSI CCGG 1 cut(s) 276
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 94
Bsp143I GATC 2 cut(s) 13, 266
BspLI GGNNCC 1 cut(s) 92
BspPI GGATC 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 2 cut(s) 13, 266
BssNI GRCGYC 1 cut(s) 280
Bst2UI CCWGG 2 cut(s) 108, 374
Bst4CI ACNGT 3 cut(s) 85, 259, 341
Bst6I CTCTTC 1 cut(s) 364
BstACI GRCGYC 1 cut(s) 280
BstDEI CTNAG 1 cut(s) 295
BstKTI GATC 2 cut(s) 16, 269
BstMBI GATC 2 cut(s) 13, 266
BstNI CCWGG 2 cut(s) 108, 374
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 3 cut(s) 106, 275, 372
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
CseI GACGC 1 cut(s) 269
CviAII CATG 2 cut(s) 65, 290
CviJI RGCY 3 cut(s) 74, 372, 382
CviKI_1 RGCY 3 cut(s) 74, 372, 382
DdeI CTNAG 1 cut(s) 295
DpnI GATC 2 cut(s) 15, 268
DpnII GATC 2 cut(s) 13, 266
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
EcoRII CCWGG 2 cut(s) 106, 372
FaeI CATG 2 cut(s) 68, 293
FaiI YATR 7 cut(s) 45, 66, 186, 247, 249, 291, 366
FaqI GGGAC 1 cut(s) 94
FatI CATG 2 cut(s) 64, 289
FauNDI CATATG 1 cut(s) 247
HapII CCGG 1 cut(s) 276
HgaI GACGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 280
Hin1II CATG 2 cut(s) 68, 293
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HpaI GTTAAC 1 cut(s) 7
HpaII CCGG 1 cut(s) 276
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 2 cut(s) 7, 243
Hpy188I TCNGA 4 cut(s) 29, 175, 195, 386
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 2 cut(s) 7, 243
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 3 cut(s) 85, 259, 341
HpyCH4V TGCA 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 295
Hsp92I GRCGYC 1 cut(s) 280
Hsp92II CATG 2 cut(s) 68, 293
KspAI GTTAAC 1 cut(s) 7
Kzo9I GATC 2 cut(s) 13, 266
LmnI GCTCC 2 cut(s) 29, 256
LpnPI CCDG 8 cut(s) 44, 93, 120, 137, 213, 239, 289, 359
MaeIII GTNAC 1 cut(s) 298
MalI GATC 2 cut(s) 15, 268
MboI GATC 2 cut(s) 13, 266
MboII GAAGA 3 cut(s) 261, 276, 351
MflI RGATCY 1 cut(s) 266
MluCI AATT 2 cut(s) 167, 205
MmeI TCCRAC 2 cut(s) 241, 278
MnlI CCTC 4 cut(s) 64, 169, 294, 372
MroXI GAANNNNTTC 1 cut(s) 268
MseI TTAA 3 cut(s) 6, 120, 132
MslI CAYNNNNRTG 1 cut(s) 329
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 3 cut(s) 108, 277, 374
MvaI CCWGG 2 cut(s) 108, 374
NciI CCSGG 1 cut(s) 277
NdeI CATATG 1 cut(s) 247
NdeII GATC 2 cut(s) 13, 266
NlaIII CATG 2 cut(s) 68, 293
NlaIV GGNNCC 1 cut(s) 92
NspI RCATGY 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 268
PflMI CCANNNNNTGG 1 cut(s) 260
Psp6I CCWGG 2 cut(s) 106, 372
PspGI CCWGG 2 cut(s) 106, 372
PspN4I GGNNCC 1 cut(s) 92
PsuI RGATCY 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 329
SaqAI TTAA 3 cut(s) 6, 120, 132
Sau3AI GATC 2 cut(s) 13, 266
ScrFI CCNGG 3 cut(s) 108, 277, 374
SetI ASST 3 cut(s) 112, 202, 378
SmiMI CAYNNNNRTG 1 cut(s) 329
Sse9I AATT 2 cut(s) 167, 205
StyD4I CCNGG 3 cut(s) 106, 275, 372
TaaI ACNGT 3 cut(s) 85, 259, 341
TasI AATT 2 cut(s) 167, 205
Tru1I TTAA 3 cut(s) 6, 120, 132
Tru9I TTAA 3 cut(s) 6, 120, 132
TspDTI ATGAA 2 cut(s) 171, 347
Van91I CCANNNNNTGG 1 cut(s) 260
XceI RCATGY 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.