Rorug01G0199400

Protein transport protein sec16

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
27884937 .. 27885983
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0199400.1

Sequence Viewer

Length: 1047 bp
ATGGAGTTTAGTTCTGATGAGAGCGCATATAAAGCTTATGCTAAATATGGAGGAAAATCTGGTTTCAATGTGAGAAAACAACGAAAGAAGAGAAACAACAAGGGTTTGGTTGTAAAGTGGCTTTATTGTTGCTCAAAAGAAGGTTACCGAAAGACCAGAACAAAGAGGGAAACATCTTATTCATTACCAGTTATAAGGGTCGGTTGTAAAGCCCATATGAGTTGCTATCGTCAAAGCAACGGAAAATTCAAGATTGTGTCGTTTGAGACAAATCACAATCATGAGTTGATTAAAACACCTATGAAGCATATGTTAAAGATTAATCGAAGTTTCTCTAAAGCTCAAAAAGAACATGCTGATGATGCTGAGATGTCAGGAATTTCAGCAAAAGCAACAGTTGAATTGATGAGTAGAGAAGTTGGGGGACGAGAAAATCTTGGTTTTATGGAAAAGGACTATCGGAATTACATACATCGAAAGCGAAGGATGAAGATGGAAAAAGGAGATGCTGGAGCTATATTTCAATACTTCCAAAAAATGAAAGAGGATAATTCATCTTCTTTTTATTCAATGCAACTTGATGAGGATGATATGAGCACAAATATTTTTTGGGCAGATGAGCGTTCAGTAAGTGATTATGGTCTCTTTGGGGATGTCGTTTGTTTTGGCACAACTTATCAGACTAATGAATATGGTAGACCATTTGCTCCATTTGTTGGGGTCAATCATCATAAGCAAACAGTGGTATTTGGTGCAGCTTTATTATATGATGAAACCATTGAGTCCTTTAAGTGGCTTTTTGAGACTTTTCTTGGAGCGATGTCTGGAAAGCAACCAAGAACCATACTTACAGACCAATCTGCAGCAATGGCTAGTGCAATAGCAGAAGTATTTCCTATAACTTATCATAGACTATGTGTTTGGCATATTTATCAAAATGCTACAAAGAGGTTAAGTCGTGTGTTTCACGGATCAGAACAGTTTGCTCATGATTTTGGAAAGTGTGTATACGACTATGAGGATGAAGATGATTGGTTATTGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

348

Amino Acids

40.31

Weight (kDa)

9.0

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 13 - 97 1.7e-17 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 179 - 299 3.9e-09 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 219 - 313 1.2e-29 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 716
AccI GTMKAC 2 cut(s) 697, 1008
AclWI GGATC 1 cut(s) 979
AcsI RAATTY 2 cut(s) 245, 378
AfiI CCNNNNNNNGG 2 cut(s) 716, 792
AgsI TTSAA 5 cut(s) 67, 250, 401, 524, 570
AluBI AGCT 4 cut(s) 35, 341, 515, 758
AluI AGCT 4 cut(s) 35, 341, 515, 758
Alw21I GWGCWC 1 cut(s) 599
Alw26I GTCTC 3 cut(s) 260, 647, 797
AlwI GGATC 1 cut(s) 979
ApeKI GCWGC 2 cut(s) 755, 863
ApoI RAATTY 2 cut(s) 245, 378
ArsI GACNNNNNNTTYG 2 cut(s) 903, 935
AseI ATTAAT 1 cut(s) 321
Asp700I GAANNNNTTC 1 cut(s) 891
AspLEI GCGC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 599
BbvI GCAGC 2 cut(s) 767, 875
BccI CCATC 1 cut(s) 487
BcoDI GTCTC 3 cut(s) 260, 647, 797
BfaI CTAG 1 cut(s) 873
BfmI CTRYAG 1 cut(s) 861
BisI GCNGC 2 cut(s) 756, 864
BlsI GCNGC 2 cut(s) 757, 865
BmsI GCATC 2 cut(s) 352, 496
BpmI CTGGAG 1 cut(s) 531
BsaI GGTCTC 1 cut(s) 647
Bsc4I CCNNNNNNNGG 2 cut(s) 716, 792
Bse1I ACTGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 873
BseGI GGATG 4 cut(s) 492, 592, 658, 1027
BseLI CCNNNNNNNGG 2 cut(s) 716, 792
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 188
BseXI GCAGC 2 cut(s) 767, 875
BsgI GTGCAG 1 cut(s) 774
BsiHKAI GWGCWC 1 cut(s) 599
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 2 cut(s) 716, 792
BsmAI GTCTC 3 cut(s) 260, 647, 797
BsmFI GGGAC 1 cut(s) 438
Bso31I GGTCTC 1 cut(s) 647
Bsp1286I GDGCHC 1 cut(s) 599
Bsp143I GATC 1 cut(s) 971
BspCNI CTCAG 1 cut(s) 358
BspHI TCATGA 2 cut(s) 280, 988
BspMAI CTGCAG 1 cut(s) 865
BspPI GGATC 1 cut(s) 979
BspTNI GGTCTC 1 cut(s) 647
BsrDI GCAATG 1 cut(s) 873
BsrI ACTGG 1 cut(s) 188
BssMI GATC 1 cut(s) 971
BssNAI GTATAC 1 cut(s) 1009
Bst1107I GTATAC 1 cut(s) 1009
Bst4CI ACNGT 3 cut(s) 397, 742, 981
Bst6I CTCTTC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 366
BstEII GGTNACC 1 cut(s) 143
BstF5I GGATG 4 cut(s) 492, 592, 658, 1027
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 1 cut(s) 974
BstMAI GTCTC 3 cut(s) 260, 647, 797
BstMBI GATC 1 cut(s) 971
BstMWI GCNNNNNNNGC 3 cut(s) 32, 362, 869
BstNSI RCATGY 1 cut(s) 356
BstPI GGTNACC 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 861
BstV1I GCAGC 2 cut(s) 767, 875
BstZ17I GTATAC 1 cut(s) 1009
BtgZI GCGATG 1 cut(s) 833
BtsCI GGATG 4 cut(s) 492, 592, 658, 1027
BtsIMutI CAGTG 1 cut(s) 747
CciI TCATGA 2 cut(s) 280, 988
CfoI GCGC 1 cut(s) 26
CviAII CATG 3 cut(s) 281, 353, 989
CviJI RGCY 8 cut(s) 35, 121, 212, 341, 515, 758, 796, 872
CviKI_1 RGCY 8 cut(s) 35, 121, 212, 341, 515, 758, 796, 872
DdeI CTNAG 1 cut(s) 366
DpnI GATC 1 cut(s) 973
DpnII GATC 1 cut(s) 971
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Eco31I GGTCTC 1 cut(s) 647
Eco91I GGTNACC 1 cut(s) 143
EcoO65I GGTNACC 1 cut(s) 143
FaeI CATG 3 cut(s) 284, 356, 992
FaqI GGGAC 1 cut(s) 438
FatI CATG 3 cut(s) 280, 352, 988
FauNDI CATATG 2 cut(s) 216, 309
FblI GTMKAC 2 cut(s) 697, 1008
Fnu4HI GCNGC 2 cut(s) 756, 864
FokI GGATG 4 cut(s) 499, 599, 665, 1034
Fsp4HI GCNGC 2 cut(s) 756, 864
FspBI CTAG 1 cut(s) 873
GlaI GCGC 1 cut(s) 25
GluI GCNGC 2 cut(s) 756, 864
GsuI CTGGAG 1 cut(s) 531
HhaI GCGC 1 cut(s) 26
Hin1II CATG 3 cut(s) 284, 356, 992
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 33
HinfI GANTC 1 cut(s) 782
Hpy166II GTNNAC 2 cut(s) 698, 1009
Hpy188I TCNGA 4 cut(s) 16, 462, 681, 976
Hpy188III TCNNGA 5 cut(s) 250, 281, 375, 825, 989
Hpy8I GTNNAC 2 cut(s) 698, 1009
HpyAV CCTTC 2 cut(s) 134, 477
HpyCH4III ACNGT 3 cut(s) 397, 742, 981
HpyCH4V TGCA 4 cut(s) 574, 755, 863, 878
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 362, 869
HpyF3I CTNAG 1 cut(s) 366
Hsp92II CATG 3 cut(s) 284, 356, 992
HspAI GCGC 1 cut(s) 24
Kzo9I GATC 1 cut(s) 971
LmnI GCTCC 3 cut(s) 512, 712, 815
LpnPI CCDG 6 cut(s) 45, 169, 201, 360, 495, 810
Lsp1109I GCAGC 2 cut(s) 767, 875
LweI GCATC 2 cut(s) 352, 496
MaeI CTAG 1 cut(s) 873
MaeIII GTNAC 1 cut(s) 143
MalI GATC 1 cut(s) 973
MboI GATC 1 cut(s) 971
MboII GAAGA 4 cut(s) 100, 502, 549, 1037
MhlI GDGCHC 1 cut(s) 599
MluCI AATT 5 cut(s) 245, 378, 401, 463, 550
MlyI GAGTC 1 cut(s) 791
MnlI CCTC 6 cut(s) 44, 159, 538, 577, 942, 1012
MroXI GAANNNNTTC 1 cut(s) 891
MseI TTAA 5 cut(s) 291, 314, 321, 789, 953
MslI CAYNNNNRTG 2 cut(s) 279, 357
MwoI GCNNNNNNNGC 3 cut(s) 32, 362, 869
NdeI CATATG 2 cut(s) 216, 309
NdeII GATC 1 cut(s) 971
NlaIII CATG 3 cut(s) 284, 356, 992
NspI RCATGY 1 cut(s) 356
PagI TCATGA 2 cut(s) 280, 988
PdmI GAANNNNTTC 1 cut(s) 891
PflMI CCANNNNNTGG 1 cut(s) 716
PkrI GCNGC 2 cut(s) 757, 865
PleI GAGTC 1 cut(s) 790
PpsI GAGTC 1 cut(s) 790
PshBI ATTAAT 1 cut(s) 321
PsiI TTATAA 1 cut(s) 194
PspEI GGTNACC 1 cut(s) 143
PsrI GAACNNNNNNTAC 2 cut(s) 832, 864
PstI CTGCAG 1 cut(s) 865
RseI CAYNNNNRTG 2 cut(s) 279, 357
SaqAI TTAA 5 cut(s) 291, 314, 321, 789, 953
SatI GCNGC 2 cut(s) 756, 864
Sau3AI GATC 1 cut(s) 971
SchI GAGTC 1 cut(s) 791
SduI GDGCHC 1 cut(s) 599
SetI ASST 7 cut(s) 37, 145, 301, 343, 517, 760, 953
SfaNI GCATC 2 cut(s) 352, 496
SfcI CTRYAG 1 cut(s) 861
SmiMI CAYNNNNRTG 2 cut(s) 279, 357
Sse9I AATT 5 cut(s) 245, 378, 401, 463, 550
SspI AATATT 1 cut(s) 604
SspMI CTAG 1 cut(s) 873
TaaI ACNGT 3 cut(s) 397, 742, 981
TaqI TCGA 2 cut(s) 325, 475
TasI AATT 5 cut(s) 245, 378, 401, 463, 550
Tru1I TTAA 5 cut(s) 291, 314, 321, 789, 953
Tru9I TTAA 5 cut(s) 291, 314, 321, 789, 953
TscAI CASTG 1 cut(s) 747
TseI GCWGC 2 cut(s) 755, 863
TspDTI ATGAA 8 cut(s) 171, 317, 503, 543, 554, 702, 786, 1038
TspGWI ACGGA 2 cut(s) 255, 984
TspRI CASTG 1 cut(s) 747
Van91I CCANNNNNTGG 1 cut(s) 716
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 2 cut(s) 245, 378
XceI RCATGY 1 cut(s) 356
XmiI GTMKAC 2 cut(s) 697, 1008
XmnI GAANNNNTTC 1 cut(s) 891
XspI CTAG 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.