Rmu_sc0012988.1_g000001

Protein transport protein sec16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012988.1
OG0001182
Physical Location & Seq
Reverse (-)
1 .. 684
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012988.1_g000001.1.cds

Sequence Viewer

Length: 345 bp
atggatgtttattaccatgtgaaggatcctgtagcgggctcagtttctgttctgaacttgacagaagttttcatgcaaaagcctgatgcttcaagttttggaatgactacttgtgattattttcgtgccttgtgccaacagtcctttccagggccgttggttggagggaatgttggaagtaaagagttgaacaagtggattgatgaaaggattgcttactgtgaatcacccgacatggactataggaaaggcaaagtattgaggttacttatttctttgcttaagatagcttgtcaacactatggaaaactccgatctccttttggtaccgacactctatccaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec16 Sec16_C

Protein Analysis

115

Amino Acids

12.89

Weight (kDa)

8.35

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 326
AccB1I GGYRCC 1 cut(s) 326
AciI CCGC 1 cut(s) 35
AclWI GGATC 2 cut(s) 20, 33
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 4 cut(s) 22, 35, 150, 161
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 93, 190
AjnI CCWGG 1 cut(s) 148
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
AlwI GGATC 2 cut(s) 20, 33
AlwNI CAGNNNCTG 1 cut(s) 47
AoxI GGCC 1 cut(s) 152
Asp718I GGTACC 1 cut(s) 326
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 219
BamHI GGATCC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 41
BceAI ACGGC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 150
BfmI CTRYAG 2 cut(s) 30, 241
BfrI CTTAAG 1 cut(s) 281
Bme1390I CCNGG 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 2 cut(s) 27, 328
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 35, 150, 161
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 4 cut(s) 22, 35, 150, 161
BseMII CTCAG 1 cut(s) 54
BshFI GGCC 1 cut(s) 154
BshNI GGYRCC 1 cut(s) 326
BslI CCNNNNNNNGG 4 cut(s) 22, 35, 150, 161
BsnI GGCC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 25, 314
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 53
BspLI GGNNCC 2 cut(s) 27, 328
BspPI GGATC 2 cut(s) 20, 33
BspT107I GGYRCC 1 cut(s) 326
BspTI CTTAAG 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 2 cut(s) 25, 314
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 141, 221
BstAFI CTTAAG 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 40
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 28, 317
BstMBI GATC 2 cut(s) 25, 314
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 2 cut(s) 30, 241
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BsuRI GGCC 1 cut(s) 154
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 37
CaiI CAGNNNCTG 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 327
CviAII CATG 3 cut(s) 17, 73, 235
CviJI RGCY 4 cut(s) 39, 82, 154, 290
CviKI_1 RGCY 4 cut(s) 39, 82, 154, 290
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 1 cut(s) 40
DpnI GATC 2 cut(s) 27, 316
DpnII GATC 2 cut(s) 25, 314
Eco24I GRGCYC 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 41
FaeI CATG 3 cut(s) 20, 76, 238
FaiI YATR 5 cut(s) 18, 74, 236, 243, 303
FalI AAGNNNNNCTT 2 cut(s) 199, 231
FatI CATG 3 cut(s) 16, 72, 234
FauI CCCGC 1 cut(s) 28
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 41
HaeIII GGCC 1 cut(s) 154
Hin1II CATG 3 cut(s) 20, 76, 238
HincII GTYRAC 1 cut(s) 296
HindII GTYRAC 1 cut(s) 296
HinfI GANTC 1 cut(s) 224
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 2 cut(s) 54, 314
Hpy8I GTNNAC 1 cut(s) 296
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 2 cut(s) 141, 221
HpyCH4V TGCA 1 cut(s) 76
HpyF3I CTNAG 1 cut(s) 40
Hsp92II CATG 3 cut(s) 20, 76, 238
KpnI GGTACC 1 cut(s) 330
Kzo9I GATC 2 cut(s) 25, 314
LpnPI CCDG 4 cut(s) 42, 96, 135, 162
LweI GCATC 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 264
MalI GATC 2 cut(s) 27, 316
MboI GATC 2 cut(s) 25, 314
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 41
MmeI TCCRAC 2 cut(s) 142, 154
MnlI CCTC 2 cut(s) 158, 255
MseI TTAA 1 cut(s) 282
MspCI CTTAAG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
NdeII GATC 2 cut(s) 25, 314
NlaIII CATG 3 cut(s) 20, 76, 238
NlaIV GGNNCC 2 cut(s) 27, 328
PfeI GAWTC 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 2 cut(s) 27, 328
PspPI GGNCC 1 cut(s) 152
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SaqAI TTAA 1 cut(s) 282
Sau3AI GATC 2 cut(s) 25, 314
Sau96I GGNCC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 1 cut(s) 41
SetI ASST 2 cut(s) 266, 292
SfaNI GCATC 1 cut(s) 76
SfcI CTRYAG 2 cut(s) 30, 241
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SsiI CCGC 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 2 cut(s) 141, 221
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TspDTI ATGAA 2 cut(s) 61, 219
Vha464I CTTAAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.