AT5G47490

transport protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
19263826 .. 19270899
7074 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47490.3

Sequence Viewer

Length: 4086 bp
ATGGCTTCGGCTTCTCAATTCCTGCTGGAGGATCAGACGGATGAGGATTTCTTCGACAAGCTTGTTGATGATGCTTATTCTCCCACCGAAGCTCAGGCTTCATCCTCTGTGACGGAGCTGAAGTTCGACGATGAAAGTGACTCCGATGATATCAGAGCTTTTTCGAATCTCTCTATTGGTAAAGATCCTTTGGGCGGAGGAGATGGCACACTGAATGAAGCAATTTTGGGGAACGATGTTGCAAACGAGGGTGCAAGCGGTTCGGTGGGGGAAGACGAGCCTTCATCTATTGCTCCGGAAGCTGTTCAATTTCCCCATAGTGATGCAAGGGAATTAAGAGATGATGAAATGAGATCGGAGGTAGCTGATATGCCACTATCTGAAACAGCAAAAGAATGCACGATAGTTAACGAGCCCGGGATTCCTGGGGTTAAGGAGCTAGATTGGGGTTCATTTGATGCGGATTTATCTGTAAATGACGGTCGTGGGTTTGGTTCATACTCTGATTTCTTCACTGAGCTGGATGCAACTGCAGGAAATTTACAGGGAAAGGCGGATGTAGCTGTGGCCACTGGAGGAAACTTAGTAGCCAATGATACAAATAACACAAGTGTTGGGTTTGAGCAACACCAGGGTCAATTGCACCACGATTCTGCAAGCGGGCAGTACGTGGATAACAGTCAATCTTGGGAAAATCTCTATCCTGGATGGAAATATGATGCAAGTACTGGTCAGTGGTTTCAAGTTGATGGTCATGATGCAAGCATGAATTCACAGGAGAGCTATGAAAACTCAACTAGTAACTGGGAAAACGTTGCTGCGAACAACTCGGATGTTGCTTATCAGAGACAGAGTACAGCATCTGCAGTGGCTGGCACAGTTGAGAATGTTTCTACTTGGAACCAGGTTTCACAAGTGAGCAATGGGTATCCAGAACACATGGTCTTTGACTCCCAGTATCCGGGATGGTACTATGACACAATTGCTCAAGAATGGCGCTCTCTTGACAGCTACAACCAGGCTTTTCAAACAACTGGTCAAGCTAATGATCAGCAAGTTCAGAATGGCAATTCTTTTACAGCTGTGGACCATAGTAGAGAGAGTAACGTACATGATGTTTACGATAAAAATCAGATACTCAGAACACAAAAATTTGATATCCAGAGCCAACATGGAAGTTGGGATCAATCGTACTATGACAAAAATCAGCAGGCTACAAACATGTGGCAACCAGAAAATGCAGGTGCGGCTGAGGCGGCTGTGACTCCTGCCTCATTATCAAACTCCGGAGGAAACCAGCAAGTAAATAATTTGTACAGTACAGGACCTGTGGCTGAACAGTTTAAGCCATATGAGAGTGGCGTTCAGAGCTTCATTCCTCAGCATATGAATGTGGCTAATGTCACGCAGAATGGACCCATGAGTTTCTCGAACGGTTTTTATAGTAGACAGGAATCTGTAGATGATGCTCCACAGTCATTTCAGAGCAGTCAGCTTTTCTCCCCAAGTGCAGGAAGATCATCTGATGGGCGTCCACCACATGCACTTGTCAATTTTGGATTTGGCGGAAAGCTCATTCTTATGAAGGACGATAGTGGTTCTCTCCAGAATTCATCATTTGGAAGTCAGAAGGGAACTGGGGGAAGCTCCATCTCTGTCTTAAACTTGGCAGAAGTTATTTCTGGGAGTGCCTCTTATTCAAGTCTCGGAGAAAACTCTTTGAGTTACTTCAGTTGTCTGGATCAACAATCTCTTCCAGGACCCTTGGTTGGAGGAAATGTTGGAAGTAAAGACTTACATAAGTGGCTTGATGAGAGAATTTTGAATTGTGAATCTTCCTACATGGACTTTTCAAGAGGGAAACTTTTAAAGATGCTTCTTTCTTTGCTCAGAATATCTTGTCAGTATTATGGGAAACTCCGTTCTCCTTTTGGTTCCGATGCATTGCAAAAGGAAACGGACTCTGCTGAAGCAGCAGTCGCTAAGCTTTTTGCAATTGCCAAGGAAGATGGCGTACAAAATGGTTATGCTCCTATTAGCCAATGCTTACAGCATTTACCACCGGAATCACAAATGCAAGTAACTGCTTCAGAGGTGCAGAATCTTCTGGCTTCTGGCAGGAAGATGGAGGCTCTCCAATGTGCACAAGAAGGTCATTTATGGGGACCAGCGCTTGTTATCGCAGCACAACTTGGGCAACAGTTCTATGTTGACACTGTGAAACAAATGGCCCTTCGCCAGCTGGTACCCGGGTCACCTTTACGAACACTGTGCCTGCTGGTTGCAGGGCAACCAGCTGAAGTGTTCTCCACTGGAAGTACAAGCGATATCTCTTTTCCTGGTTCCGTAAATTTACCTCCACAGCAACCTCAGTTTGGATGTAGTAGCATGCTTGACAGTTGGGAAGAGAATTTGGGTATAATTACTGCGAACAGAACCACAGATGATGAGCTTGTGATTACTCATCTTGGAGATTGCATGTGGAAAGAAAGGGGCGAGATTATTGCGGCCCATATTTGCTATTTAATTGCGGATAAGAACTTTGATACATACTCAGATACTGCCAGACTGTGCCTTGTTGGAGCGGATCACTGGAAATATCCTCGAACATATGCAAGTCCAGAGGCTATACAGAGAACAGAGTTATATGAATACTCTAAGACGCTGGGAAACTCTCAGTATACCCTGTTAACGTTTCAACCATATAAAGTCATGTATGCCCATATGCTGGCTGAAGTTGGTAAACTTTCGACTGCACAAAAGTACTGTCAAGCAGTATTAAAATGCCTCAAGACAGGCCGATCACCAGAAGTGGAAATGTGGAAACAGTTTGTTTCATCTCTTGAAGAGAGAATCCGTATCCACCAACAGGGCGGGTATACAGCGAATTTACACCCAGAAAAACTTGTTGGAGTACTGCTAAACTTTTTTGGTAGTAAGACACATCGTCCTGTTGGGGGCATGCCACCACCTGCACCACATTCAACCAAAGGAAACCTACAGGGAAATGAGTATCAACATCAACAGCAGGAAGCTACTAAGTTAGCATATAGTCAATCGGTTAATACAATGTCATCATTGATGCCACCTGCTTCAGTGGAACCCACACATGAGTCGGGTGGGAGTGGGAGGAGAATGGCAGTACATACTAGAAGTGTATCAGAGCCAGATTTCGGTAGGACGCCGATACAGGAAATGGCTGACTCCTCGAAAGAAAAGGCAGTTGATGGGGTGACAAAGTTGAAATCATCTGGGTCAGTGGCAGGTTCGCGGTTTAGTCGCTTTGGTTTTGGCATTTTTAAGGACACTGTAGGAAGGGTCTTAGCTCGGTCATCCAAAGAGGCAAAATTGGGCGCAGAAAATCAGTTCTACTATGACGACAAACTAAAGAGATGGGTGGAAAGAGGTGTGGAACCCCCAGCTGAGGAAGCTGCACTGCCTCCTCCTCCAACAATAGGCGCATTCCAAAACAACTCATTGGGTTATGAAAACAAATCTGATATGATTCCATCTAATGGGAACTGGAGTTCTGGTGGCCCAACTCCGTCAGAGAATTCTTCAGGAATCCCACCAATCTCACACGGTTCGAATCAATTCTCAGCTCGTGGGCGTACGGGTGTGAGGGCAAGATACGTTGACACCTATAATCCTCCAGGCCGTGGAAACTCTCATACCATGATTCCGTCACCTTCCGTACAAACTGCAAAACCACCAATCCCCGCAAAAGCAAAGTTCTTTGTTCCCGCAGCACCTGCATCGTTTTCAAACGACCAGGCAATGGAACCGGCTGCTGCTGAAACCAGACAGGAGGAGATTTCAGCAGATGAAGTAGTAGCCTCTTCAGGGGCTCCACCACCAATGATGATGCAGAGATATCCAAGTATGGATAACATCCAAAGAAATGGATTGGGGATAAGCGTCAATGGGGATAATCATCAGCCTCCTACTTCCAGAAGAACAGCTTCATGGAGTGGAAACTTTAACACCTCGTTTACGCCTCCTACCAGTCCATCAACCTTCAAACCAGTCCTACTCAACAGTAGCAGCAGCAGCTTAGGAGAGGAGCTTCAGGAAGTGGAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1361

Amino Acids

147.81

Weight (kDa)

4.87

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec16 PF12932 514 - 638 4.6e-18 Vesicle coat trafficking protein Sec16 mid-region
TPR_Sec16 PF12931 699 - 957 8e-53 Sec16 Sec23-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 4 cut(s) 1232, 2980, 3097, 3760
Acc36I ACCTGC 5 cut(s) 1232, 2980, 3097, 3254, 3760
Acc65I GGTACC 1 cut(s) 2245
AccB1I GGYRCC 1 cut(s) 2245
AccB7I CCANNNNNTGG 4 cut(s) 2728, 3515, 3659, 3778
AccBSI CCGCTC 1 cut(s) 2585
AccI GTMKAC 3 cut(s) 1447, 2681, 2879
AccII CGCG 1 cut(s) 3271
AccIII TCCGGA 2 cut(s) 295, 1286
AclI AACGTT 2 cut(s) 813, 2693
AclWI GGATC 5 cut(s) 39, 179, 1191, 1749, 2595
AcoI YGGCCR 1 cut(s) 567
AcsI RAATTY 9 cut(s) 538, 769, 1151, 1609, 1818, 2350, 2410, 2887, 3553
AcyI GRCGYC 2 cut(s) 1531, 3182
AfeI AGCGCT 1 cut(s) 2172
AflIII ACRYGT 1 cut(s) 1221
AhdI GACNNNNNGTC 1 cut(s) 2946
AhlI ACTAGT 1 cut(s) 797
AjnI CCWGG 9 cut(s) 424, 630, 703, 903, 1017, 1756, 2338, 3652, 3771
AjuI GAANNNNNNNTTGG 2 cut(s) 2892, 2924
AloI GAACNNNNNNTCC 6 cut(s) 107, 139, 1906, 1938, 3511, 3543
Alw21I GWGCWC 1 cut(s) 2146
Alw26I GTCTC 2 cut(s) 841, 1709
Alw44I GTGCAC 1 cut(s) 2142
AlwI GGATC 5 cut(s) 39, 179, 1191, 1749, 2595
AlwNI CAGNNNCTG 5 cut(s) 863, 872, 1328, 2561, 3752
Ama87I CYCGRG 2 cut(s) 416, 2249
Aor13HI TCCGGA 2 cut(s) 295, 1286
Aor51HI AGCGCT 1 cut(s) 2172
AoxI GGCC 6 cut(s) 567, 2229, 2508, 2797, 3535, 3655
ApaLI GTGCAC 1 cut(s) 2142
ApoI RAATTY 9 cut(s) 538, 769, 1151, 1609, 1818, 2350, 2410, 2887, 3553
ArsI GACNNNNNNTTYG 4 cut(s) 1021, 1053, 2752, 2784
Asp700I GAANNNNTTC 3 cut(s) 303, 3593, 3961
Asp718I GGTACC 1 cut(s) 2245
AspLEI GCGC 4 cut(s) 999, 2173, 3356, 3461
AspS9I GGNCC 8 cut(s) 1087, 1325, 1415, 1760, 2165, 2230, 2509, 3536
AsuC2I CCSGG 5 cut(s) 417, 418, 963, 2250, 2251
AsuHPI GGTGA 4 cut(s) 2247, 2796, 3244, 3678
AsuII TTCGAA 2 cut(s) 164, 3587
AvaI CYCGRG 2 cut(s) 416, 2249
AvaII GGWCC 5 cut(s) 1087, 1325, 1415, 1760, 2165
BaeGI GKGCMC 1 cut(s) 2146
BaeI ACNNNNGTAYC 2 cut(s) 2237, 2270
BalI TGGCCA 1 cut(s) 569
BanI GGYRCC 1 cut(s) 2245
BanII GRGCYC 2 cut(s) 417, 3850
BarI GAAGNNNNNNTAC 2 cut(s) 1998, 2030
BauI CACGAG 1 cut(s) 3603
BbsI GAAGAC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 2146
BbvCI CCTCAGC 3 cut(s) 1251, 1380, 3423
BceAI ACGGC 1 cut(s) 3642
BcgI CGANNNNNNTGC 8 cut(s) 243, 277, 2253, 2287, 2486, 2520, 3738, 3772
BciT130I CCWGG 9 cut(s) 426, 632, 705, 905, 1019, 1758, 2340, 3654, 3773
BciVI GTATCC 3 cut(s) 939, 969, 2870
BclI TGATCA 1 cut(s) 1048
BcnI CCSGG 5 cut(s) 417, 418, 963, 2250, 2251
BcoDI GTCTC 2 cut(s) 841, 1709
BcuI ACTAGT 1 cut(s) 797
BfaI CTAG 3 cut(s) 440, 798, 3150
BfmI CTRYAG 5 cut(s) 531, 864, 1458, 2999, 3309
BfoI RGCGCY 2 cut(s) 1000, 2174
BfuAI ACCTGC 5 cut(s) 1232, 2980, 3097, 3254, 3760
BfuI GTATCC 3 cut(s) 939, 969, 2870
BlpI GCTNAGC 1 cut(s) 1983
BmcAI AGTACT 3 cut(s) 727, 2765, 2916
Bme18I GGWCC 5 cut(s) 1087, 1325, 1415, 1760, 2165
BmeRI GACNNNNNGTC 1 cut(s) 2946
BmeT110I CYCGRG 2 cut(s) 416, 2249
BmgT120I GGNCC 8 cut(s) 1087, 1325, 1415, 1760, 2165, 2230, 2509, 3536
BmrI ACTGGG 3 cut(s) 814, 949, 1647
BmuI ACTGGG 3 cut(s) 814, 949, 1647
BpiI GAAGAC 1 cut(s) 279
BpmI CTGGAG 5 cut(s) 47, 594, 1589, 3544, 3636
Bpu10I CCTNAGC 5 cut(s) 93, 1251, 1380, 3423, 4054
Bpu1102I GCTNAGC 1 cut(s) 1983
Bpu14I TTCGAA 2 cut(s) 164, 3587
BpuEI CTTGAG 2 cut(s) 972, 2774
BpuMI CCSGG 5 cut(s) 417, 418, 963, 2250, 2251
BsaAI YACGTR 1 cut(s) 670
BsaBI GATNNNNATC 2 cut(s) 1128, 3933
BsaHI GRCGYC 2 cut(s) 1531, 3182
BsaJI CCNNGG 7 cut(s) 416, 425, 631, 1764, 2001, 2249, 3658
BsaWI WCCGGW 3 cut(s) 295, 1286, 2062
BsaXI ACNNNNNCTCC 6 cut(s) 107, 137, 1764, 1794, 3517, 3547
Bse118I RCCGGY 1 cut(s) 3784
Bse3DI GCAATG 3 cut(s) 928, 1943, 3783
Bse8I GATNNNNATC 2 cut(s) 1128, 3933
BseAI TCCGGA 2 cut(s) 295, 1286
BseBI CCWGG 9 cut(s) 426, 632, 705, 905, 1019, 1758, 2340, 3654, 3773
BseDI CCNNGG 7 cut(s) 416, 425, 631, 1764, 2001, 2249, 3658
BseJI GATNNNNATC 2 cut(s) 1128, 3933
BseMI GCAATG 3 cut(s) 928, 1943, 3783
BseRI GAGGAG 7 cut(s) 213, 3145, 3196, 3432, 3435, 3824, 4076
BseSI GKGCMC 1 cut(s) 2146
BseYI CCCAGC 2 cut(s) 2665, 3418
BsgI GTGCAG 5 cut(s) 1530, 2117, 2739, 2958, 3417
Bsh1236I CGCG 1 cut(s) 3271
Bsh1285I CGRYCG 1 cut(s) 484
BshFI GGCC 6 cut(s) 569, 2231, 2510, 2799, 3537, 3657
BshNI GGYRCC 1 cut(s) 2245
BsiEI CGRYCG 1 cut(s) 484
BsiHKAI GWGCWC 1 cut(s) 2146
BsiHKCI CYCGRG 2 cut(s) 416, 2249
BsiSI CCGG 7 cut(s) 296, 417, 962, 1287, 2063, 2250, 3785
BsiWI CGTACG 1 cut(s) 3611
BslFI GGGAC 1 cut(s) 2178
BsmAI GTCTC 2 cut(s) 841, 1709
BsmFI GGGAC 1 cut(s) 2178
BsmI GAATGC 2 cut(s) 401, 3461
BsnI GGCC 6 cut(s) 569, 2231, 2510, 2799, 3537, 3657
BsoBI CYCGRG 2 cut(s) 416, 2249
Bsp119I TTCGAA 2 cut(s) 164, 3587
Bsp1286I GDGCHC 3 cut(s) 417, 2146, 3850
Bsp13I TCCGGA 2 cut(s) 295, 1286
Bsp1407I TGTACA 1 cut(s) 1314
Bsp143I GATC 9 cut(s) 31, 184, 353, 1048, 1183, 1517, 1741, 2587, 2801
Bsp1720I GCTNAGC 1 cut(s) 1983
BspANI GGCC 6 cut(s) 569, 2231, 2510, 2799, 3537, 3657
BspEI TCCGGA 2 cut(s) 295, 1286
BspFNI CGCG 1 cut(s) 3271
BspHI TCATGA 1 cut(s) 754
BspMAI CTGCAG 2 cut(s) 535, 868
BspMI ACCTGC 5 cut(s) 1232, 2980, 3097, 3254, 3760
BspPI GGATC 5 cut(s) 39, 179, 1191, 1749, 2595
BspT104I TTCGAA 2 cut(s) 164, 3587
BspT107I GGYRCC 1 cut(s) 2245
BsrBI CCGCTC 1 cut(s) 2585
BsrDI GCAATG 3 cut(s) 928, 1943, 3783
BsrFI RCCGGY 1 cut(s) 3784
BsrGI TGTACA 1 cut(s) 1314
BssAI RCCGGY 1 cut(s) 3784
BssECI CCNNGG 7 cut(s) 416, 425, 631, 1764, 2001, 2249, 3658
BssMI GATC 9 cut(s) 31, 184, 353, 1048, 1183, 1517, 1741, 2587, 2801
BssNAI GTATAC 2 cut(s) 2682, 2880
BssNI GRCGYC 2 cut(s) 1531, 3182
BssSI CACGAG 1 cut(s) 3603
BssT1I CCWWGG 2 cut(s) 1764, 2001
Bst1107I GTATAC 2 cut(s) 2682, 2880
Bst2BI CACGAG 1 cut(s) 3603
Bst2UI CCWGG 9 cut(s) 426, 632, 705, 905, 1019, 1758, 2340, 3654, 3773
Bst6I CTCTTC 4 cut(s) 1758, 2400, 2841, 3844
BstACI GRCGYC 2 cut(s) 1531, 3182
BstAPI GCANNNNNTGC 1 cut(s) 3752
BstAUI TGTACA 1 cut(s) 1314
BstBAI YACGTR 1 cut(s) 670
BstBI TTCGAA 2 cut(s) 164, 3587
BstDSI CCRYGG 1 cut(s) 3658
BstEII GGTNACC 1 cut(s) 2253
BstENI CCTNNNNNAGG 1 cut(s) 26
BstFNI CGCG 1 cut(s) 3271
BstH2I RGCGCY 2 cut(s) 1000, 2174
BstHHI GCGC 4 cut(s) 999, 2173, 3356, 3461
BstKTI GATC 9 cut(s) 34, 187, 356, 1051, 1186, 1520, 1744, 2590, 2804
BstMAI GTCTC 2 cut(s) 841, 1709
BstMBI GATC 9 cut(s) 31, 184, 353, 1048, 1183, 1517, 1741, 2587, 2801
BstMCI CGRYCG 1 cut(s) 484
BstNI CCWGG 9 cut(s) 426, 632, 705, 905, 1019, 1758, 2340, 3654, 3773
BstNSI RCATGY 5 cut(s) 1225, 1544, 2392, 2482, 2965
BstPI GGTNACC 1 cut(s) 2253
BstSFI CTRYAG 5 cut(s) 531, 864, 1458, 2999, 3309
BstSLI GKGCMC 1 cut(s) 2146
BstUI CGCG 1 cut(s) 3271
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 184
BstXI CCANNNNNNTGG 1 cut(s) 3902
BstYI RGATCY 1 cut(s) 184
BstZ17I GTATAC 2 cut(s) 2682, 2880
BsuI GTATCC 3 cut(s) 939, 969, 2870
BsuRI GGCC 6 cut(s) 569, 2231, 2510, 2799, 3537, 3657
BtgI CCRYGG 1 cut(s) 3658
BtsI GCAGTG 2 cut(s) 873, 3434
BveI ACCTGC 5 cut(s) 1232, 2980, 3097, 3254, 3760
CaiI CAGNNNCTG 5 cut(s) 863, 872, 1328, 2561, 3752
CciI TCATGA 1 cut(s) 754
CfoI GCGC 4 cut(s) 999, 2173, 3356, 3461
Cfr10I RCCGGY 1 cut(s) 3784
Cfr13I GGNCC 8 cut(s) 1087, 1325, 1415, 1760, 2165, 2230, 2509, 3536
Cfr9I CCCGGG 2 cut(s) 416, 2249
CseI GACGC 4 cut(s) 1520, 2671, 3190, 3907
CsiI ACCWGGT 1 cut(s) 903
DpnI GATC 9 cut(s) 33, 186, 355, 1050, 1185, 1519, 1743, 2589, 2803
DpnII GATC 9 cut(s) 31, 184, 353, 1048, 1183, 1517, 1741, 2587, 2801
DraI TTTAAA 1 cut(s) 1869
DriI GACNNNNNGTC 1 cut(s) 2946
EaeI YGGCCR 1 cut(s) 567
Eam1104I CTCTTC 4 cut(s) 1758, 2400, 2841, 3844
Eam1105I GACNNNNNGTC 1 cut(s) 2946
EarI CTCTTC 4 cut(s) 1758, 2400, 2841, 3844
EciI GGCGGA 3 cut(s) 210, 569, 1581
Eco130I CCWWGG 2 cut(s) 1764, 2001
Eco24I GRGCYC 2 cut(s) 417, 3850
Eco32I GATATC 4 cut(s) 151, 1159, 2329, 3875
Eco47I GGWCC 5 cut(s) 1087, 1325, 1415, 1760, 2165
Eco47III AGCGCT 1 cut(s) 2172
Eco88I CYCGRG 2 cut(s) 416, 2249
Eco91I GGTNACC 1 cut(s) 2253
EcoNI CCTNNNNNAGG 1 cut(s) 26
EcoO109I RGGNCCY 2 cut(s) 1325, 1760
EcoO65I GGTNACC 1 cut(s) 2253
EcoRI GAATTC 3 cut(s) 769, 1609, 3553
EcoRII CCWGG 9 cut(s) 424, 630, 703, 903, 1017, 1756, 2338, 3652, 3771
EcoRV GATATC 4 cut(s) 151, 1159, 2329, 3875
EcoT14I CCWWGG 2 cut(s) 1764, 2001
EcoT22I ATGCAT 1 cut(s) 1945
EcoT38I GRGCYC 2 cut(s) 417, 3850
ErhI CCWWGG 2 cut(s) 1764, 2001
FalI AAGNNNNNCTT 2 cut(s) 3946, 3978
FaqI GGGAC 1 cut(s) 2178
FauI CCCGC 4 cut(s) 653, 2867, 3727, 3751
FauNDI CATATG 4 cut(s) 1351, 1386, 2611, 2724
FbaI TGATCA 1 cut(s) 1048
FblI GTMKAC 3 cut(s) 1447, 2681, 2879
FriOI GRGCYC 2 cut(s) 417, 3850
FspBI CTAG 3 cut(s) 440, 798, 3150
GlaI GCGC 4 cut(s) 998, 2172, 3355, 3460
GsaI CCCAGC 2 cut(s) 2669, 3422
GsuI CTGGAG 5 cut(s) 47, 594, 1589, 3544, 3636
HaeII RGCGCY 2 cut(s) 1000, 2174
HaeIII GGCC 6 cut(s) 569, 2231, 2510, 2799, 3537, 3657
HapII CCGG 7 cut(s) 296, 417, 962, 1287, 2063, 2250, 3785
HgaI GACGC 4 cut(s) 1520, 2671, 3190, 3907
HhaI GCGC 4 cut(s) 999, 2173, 3356, 3461
Hin1I GRCGYC 2 cut(s) 1531, 3182
Hin6I GCGC 4 cut(s) 997, 2171, 3354, 3459
HinP1I GCGC 4 cut(s) 997, 2171, 3354, 3459
HincII GTYRAC 4 cut(s) 409, 2212, 2691, 3637
HindII GTYRAC 4 cut(s) 409, 2212, 2691, 3637
HindIII AAGCTT 2 cut(s) 59, 1985
HpaI GTTAAC 2 cut(s) 409, 2691
HpaII CCGG 7 cut(s) 296, 417, 962, 1287, 2063, 2250, 3785
HphI GGTGA 4 cut(s) 2247, 2796, 3244, 3678
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 8 cut(s) 291, 1579, 1624, 2144, 2243, 3309, 3699, 4027
HpyCH4IV ACGT 5 cut(s) 669, 813, 1107, 2693, 3633
HpySE526I ACGT 5 cut(s) 669, 813, 1107, 2693, 3633
Hsp92I GRCGYC 2 cut(s) 1531, 3182
HspAI GCGC 4 cut(s) 997, 2171, 3354, 3459
Kpn2I TCCGGA 2 cut(s) 295, 1286
KpnI GGTACC 1 cut(s) 2249
Ksp22I TGATCA 1 cut(s) 1048
KspAI GTTAAC 2 cut(s) 409, 2691
Kzo9I GATC 9 cut(s) 31, 184, 353, 1048, 1183, 1517, 1741, 2587, 2801
LmnI GCTCC 9 cut(s) 115, 298, 436, 1474, 1652, 2035, 2582, 3853, 4063
MabI ACCWGGT 1 cut(s) 903
MaeI CTAG 3 cut(s) 440, 798, 3150
MaeII ACGT 5 cut(s) 669, 813, 1107, 2693, 3633
MalI GATC 9 cut(s) 33, 186, 355, 1050, 1185, 1519, 1743, 2589, 2803
MbiI CCGCTC 1 cut(s) 2585
MboI GATC 9 cut(s) 31, 184, 353, 1048, 1183, 1517, 1741, 2587, 2801
MfeI CAATTG 3 cut(s) 638, 981, 1995
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 3 cut(s) 417, 2146, 3850
MlsI TGGCCA 1 cut(s) 569
MluNI TGGCCA 1 cut(s) 569
MlyI GAGTC 6 cut(s) 134, 944, 1258, 1955, 3122, 3197
MmeI TCCRAC 5 cut(s) 1750, 1762, 2560, 2890, 3473
Mox20I TGGCCA 1 cut(s) 569
Mph1103I ATGCAT 1 cut(s) 1945
MroI TCCGGA 2 cut(s) 295, 1286
MroXI GAANNNNTTC 3 cut(s) 303, 3593, 3961
MscI TGGCCA 1 cut(s) 569
MslI CAYNNNNRTG 3 cut(s) 321, 1389, 1580
Msp20I TGGCCA 1 cut(s) 569
MspA1I CMGCKG 4 cut(s) 1082, 2242, 2297, 3422
MspI CCGG 7 cut(s) 296, 417, 962, 1287, 2063, 2250, 3785
MunI CAATTG 3 cut(s) 638, 981, 1995
Mva1269I GAATGC 2 cut(s) 401, 3461
MvaI CCWGG 9 cut(s) 426, 632, 705, 905, 1019, 1758, 2340, 3654, 3773
MvnI CGCG 1 cut(s) 3271
NciI CCSGG 5 cut(s) 417, 418, 963, 2250, 2251
NdeI CATATG 4 cut(s) 1351, 1386, 2611, 2724
NdeII GATC 9 cut(s) 31, 184, 353, 1048, 1183, 1517, 1741, 2587, 2801
NmuCI GTSAC 7 cut(s) 109, 137, 1261, 1402, 2253, 3232, 3684
NsiI ATGCAT 1 cut(s) 1945
NspI RCATGY 5 cut(s) 1225, 1544, 2392, 2482, 2965
NspV TTCGAA 2 cut(s) 164, 3587
PaeI GCATGC 2 cut(s) 2392, 2965
PagI TCATGA 1 cut(s) 754
PaqCI CACCTGC 4 cut(s) 1232, 2980, 3097, 3760
PciI ACATGT 1 cut(s) 1221
PctI GAATGC 2 cut(s) 401, 3461
PdmI GAANNNNTTC 3 cut(s) 303, 3593, 3961
Pfl23II CGTACG 1 cut(s) 3611
PflMI CCANNNNNTGG 4 cut(s) 2728, 3515, 3659, 3778
PfoI TCCNGGA 3 cut(s) 703, 961, 1756
PleI GAGTC 6 cut(s) 134, 944, 1258, 1955, 3121, 3197
PpsI GAGTC 6 cut(s) 134, 944, 1258, 1955, 3121, 3197
Ppu21I YACGTR 1 cut(s) 670
PpuMI RGGWCCY 2 cut(s) 1325, 1760
PscI ACATGT 1 cut(s) 1221
Psp1406I AACGTT 2 cut(s) 813, 2693
Psp5II RGGWCCY 2 cut(s) 1325, 1760
Psp6I CCWGG 9 cut(s) 424, 630, 703, 903, 1017, 1756, 2338, 3652, 3771
PspEI GGTNACC 1 cut(s) 2253
PspFI CCCAGC 2 cut(s) 2665, 3418
PspGI CCWGG 9 cut(s) 424, 630, 703, 903, 1017, 1756, 2338, 3652, 3771
PspLI CGTACG 1 cut(s) 3611
PspPI GGNCC 8 cut(s) 1087, 1325, 1415, 1760, 2165, 2230, 2509, 3536
PspPPI RGGWCCY 2 cut(s) 1325, 1760
PstI CTGCAG 2 cut(s) 535, 868
PstNI CAGNNNCTG 5 cut(s) 863, 872, 1328, 2561, 3752
PsuI RGATCY 1 cut(s) 184
PvuII CAGCTG 4 cut(s) 1082, 2242, 2297, 3422
RseI CAYNNNNRTG 3 cut(s) 321, 1389, 1580
Sau3AI GATC 9 cut(s) 31, 184, 353, 1048, 1183, 1517, 1741, 2587, 2801
Sau96I GGNCC 8 cut(s) 1087, 1325, 1415, 1760, 2165, 2230, 2509, 3536
ScaI AGTACT 3 cut(s) 727, 2765, 2916
SchI GAGTC 6 cut(s) 134, 944, 1258, 1955, 3122, 3197
SduI GDGCHC 3 cut(s) 417, 2146, 3850
SexAI ACCWGGT 1 cut(s) 903
SfcI CTRYAG 5 cut(s) 531, 864, 1458, 2999, 3309
SfuI TTCGAA 2 cut(s) 164, 3587
SinI GGWCC 5 cut(s) 1087, 1325, 1415, 1760, 2165
SmaI CCCGGG 2 cut(s) 418, 2251
SmiMI CAYNNNNRTG 3 cut(s) 321, 1389, 1580
SmlI CTYRAG 2 cut(s) 987, 2789
SmoI CTYRAG 2 cut(s) 987, 2789
SpeI ACTAGT 1 cut(s) 797
SphI GCATGC 2 cut(s) 2392, 2965
SspMI CTAG 3 cut(s) 440, 798, 3150
StyI CCWWGG 2 cut(s) 1764, 2001
TaiI ACGT 5 cut(s) 672, 816, 1110, 2696, 3636
TaqI TCGA 8 cut(s) 54, 126, 164, 1430, 2605, 2750, 3209, 3587
TaqII GACCGA 1 cut(s) 3318
TatI WGTACW 8 cut(s) 725, 854, 1314, 1319, 2318, 2763, 2914, 3142
TauI GCSGC 3 cut(s) 1250, 1259, 2510
TseFI GTSAC 7 cut(s) 109, 137, 1261, 1402, 2253, 3232, 3684
Tsp45I GTSAC 7 cut(s) 109, 137, 1261, 1402, 2253, 3232, 3684
TspGWI ACGGA 9 cut(s) 53, 128, 1910, 1973, 2335, 2846, 3534, 3672, 3682
TspMI CCCGGG 2 cut(s) 416, 2249
Van91I CCANNNNNTGG 4 cut(s) 2728, 3515, 3659, 3778
VneI GTGCAC 1 cut(s) 2142
VpaK11BI GGWCC 5 cut(s) 1087, 1325, 1415, 1760, 2165
XagI CCTNNNNNAGG 1 cut(s) 26
XapI RAATTY 9 cut(s) 538, 769, 1151, 1609, 1818, 2350, 2410, 2887, 3553
XceI RCATGY 5 cut(s) 1225, 1544, 2392, 2482, 2965
XcmI CCANNNNNNNNNTGG 1 cut(s) 1169
XmaI CCCGGG 2 cut(s) 416, 2249
XmiI GTMKAC 3 cut(s) 1447, 2681, 2879
XmnI GAANNNNTTC 3 cut(s) 303, 3593, 3961
XspI CTAG 3 cut(s) 440, 798, 3150
ZrmI AGTACT 3 cut(s) 727, 2765, 2916
Zsp2I ATGCAT 1 cut(s) 1945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.