Protein transport protein sec16
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1113 |
| AarI | CACCTGC | 1 cut(s) | 373 |
| AatII | GACGTC | 1 cut(s) | 741 |
| Acc16I | TGCGCA | 1 cut(s) | 561 |
| Acc36I | ACCTGC | 5 cut(s) | 373, 835, 2024, 2185, 3271 |
| Acc65I | GGTACC | 3 cut(s) | 885, 1814, 3732 |
| AccB1I | GGYRCC | 3 cut(s) | 885, 1814, 3732 |
| AccB7I | CCANNNNNTGG | 6 cut(s) | 1160, 1174, 1397, 3613, 3760, 3953 |
| AccI | GTMKAC | 1 cut(s) | 2933 |
| AccII | CGCG | 2 cut(s) | 188, 2027 |
| AcoI | YGGCCR | 2 cut(s) | 1103, 2940 |
| AcsI | RAATTY | 7 cut(s) | 496, 1226, 1543, 2293, 2422, 2770, 3775 |
| AcuI | CTGAAG | 6 cut(s) | 1790, 1929, 2637, 2712, 3276, 3387 |
| AcyI | GRCGYC | 2 cut(s) | 738, 1417 |
| AdeI | CACNNNGTG | 2 cut(s) | 517, 1930 |
| AfaI | GTAC | 9 cut(s) | 704, 887, 1341, 1816, 1980, 2495, 2648, 2818, 3734 |
| AflII | CTTAAG | 1 cut(s) | 3218 |
| AflIII | ACRYGT | 3 cut(s) | 897, 1062, 1598 |
| AhlI | ACTAGT | 1 cut(s) | 1097 |
| AjiI | CACGTC | 1 cut(s) | 1599 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1224, 1256, 1617, 1649, 2859, 2891 |
| AleI | CACNNNNGTG | 1 cut(s) | 3590 |
| Alw21I | GWGCWC | 6 cut(s) | 1051, 1897, 2550, 2689, 2746, 3833 |
| Alw26I | GTCTC | 1 cut(s) | 1202 |
| Alw44I | GTGCAC | 1 cut(s) | 1893 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1010, 1535, 2444, 3032 |
| ApaI | GGGCCC | 3 cut(s) | 1644, 2912, 3368 |
| ApaLI | GTGCAC | 1 cut(s) | 1893 |
| ApeKI | GCWGC | 9 cut(s) | 98, 101, 808, 811, 2390, 2710, 3290, 3560, 3925 |
| ApoI | RAATTY | 7 cut(s) | 496, 1226, 1543, 2293, 2422, 2770, 3775 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2414, 2446 |
| AseI | ATTAAT | 1 cut(s) | 2232 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 3022, 3975 |
| Asp718I | GGTACC | 3 cut(s) | 885, 1814, 3732 |
| AspLEI | GCGC | 5 cut(s) | 562, 2027, 2029, 2056, 2395 |
| AsuC2I | CCSGG | 3 cut(s) | 87, 364, 372 |
| AsuII | TTCGAA | 1 cut(s) | 8 |
| AsuNHI | GCTAGC | 1 cut(s) | 2498 |
| AvaII | GGWCC | 4 cut(s) | 79, 3155, 3395, 3408 |
| BaeGI | GKGCMC | 4 cut(s) | 1644, 1897, 2912, 3368 |
| BalI | TGGCCA | 1 cut(s) | 2942 |
| BamHI | GGATCC | 3 cut(s) | 440, 1513, 3347 |
| BanI | GGYRCC | 3 cut(s) | 885, 1814, 3732 |
| BanII | GRGCYC | 5 cut(s) | 1644, 2746, 2912, 3368, 3833 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1941, 1973 |
| BauI | CACGAG | 1 cut(s) | 3447 |
| Bbv12I | GWGCWC | 6 cut(s) | 1051, 1897, 2550, 2689, 2746, 3833 |
| BbvI | GCAGC | 9 cut(s) | 88, 110, 820, 823, 2402, 2722, 3302, 3547, 3912 |
| BceAI | ACGGC | 2 cut(s) | 1157, 3828 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 418, 452, 740, 774, 2136, 2170, 2801, 2835 |
| BciVI | GTATCC | 5 cut(s) | 28, 532, 729, 2089, 2753 |
| BclI | TGATCA | 2 cut(s) | 285, 1294 |
| BcnI | CCSGG | 3 cut(s) | 87, 364, 372 |
| BcoDI | GTCTC | 1 cut(s) | 1202 |
| BcuI | ACTAGT | 1 cut(s) | 1097 |
| BfaI | CTAG | 5 cut(s) | 1098, 1433, 2499, 2714, 2922 |
| BfmI | CTRYAG | 4 cut(s) | 1518, 2388, 3288, 3910 |
| BfoI | RGCGCY | 1 cut(s) | 2057 |
| BfrI | CTTAAG | 1 cut(s) | 3218 |
| BfuAI | ACCTGC | 5 cut(s) | 373, 835, 2024, 2185, 3271 |
| BfuI | GTATCC | 5 cut(s) | 28, 532, 729, 2089, 2753 |
| BglII | AGATCT | 2 cut(s) | 3326, 3973 |
| BlpI | GCTNAGC | 1 cut(s) | 1863 |
| BmcAI | AGTACT | 2 cut(s) | 704, 2818 |
| Bme18I | GGWCC | 4 cut(s) | 79, 3155, 3395, 3408 |
| BmgBI | CACGTC | 1 cut(s) | 1599 |
| BmrI | ACTGGG | 3 cut(s) | 715, 940, 3174 |
| BmsI | GCATC | 6 cut(s) | 235, 1883, 2002, 2997, 3607, 3824 |
| BmtI | GCTAGC | 1 cut(s) | 2502 |
| BmuI | ACTGGG | 3 cut(s) | 715, 940, 3174 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2420, 2452 |
| BpmI | CTGGAG | 3 cut(s) | 3234, 3375, 3573 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1149 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1863 |
| Bpu14I | TTCGAA | 1 cut(s) | 8 |
| BpuEI | CTTGAG | 2 cut(s) | 2747, 3343 |
| BpuMI | CCSGG | 3 cut(s) | 87, 364, 372 |
| Bsa29I | ATCGAT | 1 cut(s) | 2811 |
| BsaAI | YACGTR | 1 cut(s) | 1063 |
| BsaHI | GRCGYC | 2 cut(s) | 738, 1417 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 222, 252, 1644, 1674, 3370, 3400 |
| Bse118I | RCCGGY | 1 cut(s) | 2050 |
| Bse1I | ACTGG | 8 cut(s) | 710, 935, 1995, 2340, 2480, 3169, 3523, 3590 |
| Bse3DI | GCAATG | 2 cut(s) | 1894, 3266 |
| BseCI | ATCGAT | 1 cut(s) | 2811 |
| BseMI | GCAATG | 2 cut(s) | 1894, 3266 |
| BseMII | CTCAG | 9 cut(s) | 161, 1140, 1542, 1965, 2451, 2514, 2573, 3062, 3456 |
| BseNI | ACTGG | 8 cut(s) | 710, 935, 1995, 2340, 2480, 3169, 3523, 3590 |
| BsePI | GCGCGC | 1 cut(s) | 2025 |
| BseRI | GAGGAG | 4 cut(s) | 6, 2303, 3264, 3378 |
| BseSI | GKGCMC | 4 cut(s) | 1644, 1897, 2912, 3368 |
| BseXI | GCAGC | 9 cut(s) | 88, 110, 820, 823, 2402, 2722, 3302, 3547, 3912 |
| BseYI | CCCAGC | 2 cut(s) | 1412, 3425 |
| BsgI | GTGCAG | 3 cut(s) | 606, 876, 1952 |
| Bsh1236I | CGCG | 2 cut(s) | 188, 2027 |
| BshNI | GGYRCC | 3 cut(s) | 885, 1814, 3732 |
| BshVI | ATCGAT | 1 cut(s) | 2811 |
| BsiHKAI | GWGCWC | 6 cut(s) | 1051, 1897, 2550, 2689, 2746, 3833 |
| BsiSI | CCGG | 6 cut(s) | 86, 363, 371, 525, 683, 2051 |
| BsiWI | CGTACG | 1 cut(s) | 2493 |
| BslFI | GGGAC | 6 cut(s) | 889, 947, 3121, 3168, 3421, 3883 |
| BsmAI | GTCTC | 1 cut(s) | 1202 |
| BsmFI | GGGAC | 6 cut(s) | 889, 947, 3121, 3168, 3421, 3883 |
| BsmI | GAATGC | 1 cut(s) | 3510 |
| Bsp119I | TTCGAA | 1 cut(s) | 8 |
| Bsp120I | GGGCCC | 3 cut(s) | 1640, 2908, 3364 |
| Bsp1286I | GDGCHC | 9 cut(s) | 1051, 1644, 1897, 2550, 2689, 2746, 2912, 3368, 3833 |
| Bsp1407I | TGTACA | 1 cut(s) | 1339 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1863 |
| Bsp19I | CCATGG | 1 cut(s) | 2937 |
| BspCNI | CTCAG | 9 cut(s) | 162, 1141, 1541, 1966, 2450, 2515, 2572, 3061, 3455 |
| BspDI | ATCGAT | 1 cut(s) | 2811 |
| BspFNI | CGCG | 2 cut(s) | 188, 2027 |
| BspHI | TCATGA | 2 cut(s) | 310, 3979 |
| BspMAI | CTGCAG | 2 cut(s) | 2392, 3292 |
| BspMI | ACCTGC | 5 cut(s) | 373, 835, 2024, 2185, 3271 |
| BspOI | GCTAGC | 1 cut(s) | 2502 |
| BspT104I | TTCGAA | 1 cut(s) | 8 |
| BspT107I | GGYRCC | 3 cut(s) | 885, 1814, 3732 |
| BspTI | CTTAAG | 1 cut(s) | 3218 |
| BsrDI | GCAATG | 2 cut(s) | 1894, 3266 |
| BsrFI | RCCGGY | 1 cut(s) | 2050 |
| BsrGI | TGTACA | 1 cut(s) | 1339 |
| BsrI | ACTGG | 8 cut(s) | 710, 935, 1995, 2340, 2480, 3169, 3523, 3590 |
| BssAI | RCCGGY | 1 cut(s) | 2050 |
| BssHII | GCGCGC | 1 cut(s) | 2025 |
| BssNI | GRCGYC | 2 cut(s) | 738, 1417 |
| BssSI | CACGAG | 1 cut(s) | 3447 |
| BssT1I | CCWWGG | 5 cut(s) | 153, 871, 1644, 1830, 2937 |
| Bst2BI | CACGAG | 1 cut(s) | 3447 |
| BstACI | GRCGYC | 2 cut(s) | 738, 1417 |
| BstAFI | CTTAAG | 1 cut(s) | 3218 |
| BstAUI | TGTACA | 1 cut(s) | 1339 |
| BstBAI | YACGTR | 1 cut(s) | 1063 |
| BstBI | TTCGAA | 1 cut(s) | 8 |
| BstDSI | CCRYGG | 2 cut(s) | 186, 2937 |
| BstEII | GGTNACC | 1 cut(s) | 3602 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1521, 1947, 3390 |
| BstFNI | CGCG | 2 cut(s) | 188, 2027 |
| BstH2I | RGCGCY | 1 cut(s) | 2057 |
| BstHHI | GCGC | 5 cut(s) | 562, 2027, 2029, 2056, 2395 |
| BstMAI | GTCTC | 1 cut(s) | 1202 |
| BstNSI | RCATGY | 6 cut(s) | 901, 1194, 2611, 3079, 3635, 3898 |
| BstPI | GGTNACC | 1 cut(s) | 3602 |
| BstSFI | CTRYAG | 4 cut(s) | 1518, 2388, 3288, 3910 |
| BstSLI | GKGCMC | 4 cut(s) | 1644, 1897, 2912, 3368 |
| BstUI | CGCG | 2 cut(s) | 188, 2027 |
| BstV1I | GCAGC | 9 cut(s) | 88, 110, 820, 823, 2402, 2722, 3302, 3547, 3912 |
| BstX2I | RGATCY | 8 cut(s) | 440, 1403, 1513, 3326, 3347, 3467, 3664, 3973 |
| BstYI | RGATCY | 8 cut(s) | 440, 1403, 1513, 3326, 3347, 3467, 3664, 3973 |
| Bsu15I | ATCGAT | 1 cut(s) | 2811 |
| BsuI | GTATCC | 5 cut(s) | 28, 532, 729, 2089, 2753 |
| BsuTUI | ATCGAT | 1 cut(s) | 2811 |
| BtgI | CCRYGG | 2 cut(s) | 186, 2937 |
| BtrI | CACGTC | 1 cut(s) | 1599 |
| BtsI | GCAGTG | 3 cut(s) | 535, 589, 758 |
| BveI | ACCTGC | 5 cut(s) | 373, 835, 2024, 2185, 3271 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1010, 1535, 2444, 3032 |
| CciI | TCATGA | 2 cut(s) | 310, 3979 |
| CfoI | GCGC | 5 cut(s) | 562, 2027, 2029, 2056, 2395 |
| Cfr10I | RCCGGY | 1 cut(s) | 2050 |
| Cfr42I | CCGCGG | 1 cut(s) | 189 |
| ClaI | ATCGAT | 1 cut(s) | 2811 |
| CseI | GACGC | 1 cut(s) | 1406 |
| Csp6I | GTAC | 9 cut(s) | 703, 886, 1340, 1815, 1979, 2494, 2647, 2817, 3733 |
| CviQI | GTAC | 9 cut(s) | 703, 886, 1340, 1815, 1979, 2494, 2647, 2817, 3733 |
| DraI | TTTAAA | 2 cut(s) | 2673, 3336 |
| DraIII | CACNNNGTG | 2 cut(s) | 517, 1930 |
| EaeI | YGGCCR | 2 cut(s) | 1103, 2940 |
| EciI | GGCGGA | 4 cut(s) | 206, 257, 314, 2772 |
| Ecl136II | GAGCTC | 2 cut(s) | 2744, 3831 |
| Eco130I | CCWWGG | 5 cut(s) | 153, 871, 1644, 1830, 2937 |
| Eco24I | GRGCYC | 5 cut(s) | 1644, 2746, 2912, 3368, 3833 |
| Eco32I | GATATC | 1 cut(s) | 576 |
| Eco47I | GGWCC | 4 cut(s) | 79, 3155, 3395, 3408 |
| Eco53kI | GAGCTC | 2 cut(s) | 2744, 3831 |
| Eco57I | CTGAAG | 6 cut(s) | 1790, 1929, 2637, 2712, 3276, 3387 |
| Eco91I | GGTNACC | 1 cut(s) | 3602 |
| EcoICRI | GAGCTC | 2 cut(s) | 2744, 3831 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1521, 1947, 3390 |
| EcoO109I | RGGNCCY | 6 cut(s) | 1640, 1641, 2909, 3155, 3364, 3408 |
| EcoO65I | GGTNACC | 1 cut(s) | 3602 |
| EcoRV | GATATC | 1 cut(s) | 576 |
| EcoT14I | CCWWGG | 5 cut(s) | 153, 871, 1644, 1830, 2937 |
| EcoT22I | ATGCAT | 1 cut(s) | 3012 |
| EcoT38I | GRGCYC | 5 cut(s) | 1644, 2746, 2912, 3368, 3833 |
| ErhI | CCWWGG | 5 cut(s) | 153, 871, 1644, 1830, 2937 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 3975 |
| FaqI | GGGAC | 6 cut(s) | 889, 947, 3121, 3168, 3421, 3883 |
| FauI | CCCGC | 5 cut(s) | 90, 106, 487, 2857, 3122 |
| FauNDI | CATATG | 1 cut(s) | 1384 |
| FbaI | TGATCA | 2 cut(s) | 285, 1294 |
| FblI | GTMKAC | 1 cut(s) | 2933 |
| FriOI | GRGCYC | 5 cut(s) | 1644, 2746, 2912, 3368, 3833 |
| FspBI | CTAG | 5 cut(s) | 1098, 1433, 2499, 2714, 2922 |
| FspI | TGCGCA | 1 cut(s) | 561 |
| GlaI | GCGC | 5 cut(s) | 561, 2026, 2028, 2055, 2394 |
| GsaI | CCCAGC | 2 cut(s) | 1416, 3429 |
| GsuI | CTGGAG | 3 cut(s) | 3234, 3375, 3573 |
| HaeII | RGCGCY | 1 cut(s) | 2057 |
| HapII | CCGG | 6 cut(s) | 86, 363, 371, 525, 683, 2051 |
| HgaI | GACGC | 1 cut(s) | 1406 |
| HhaI | GCGC | 5 cut(s) | 562, 2027, 2029, 2056, 2395 |
| Hin1I | GRCGYC | 2 cut(s) | 738, 1417 |
| Hin6I | GCGC | 5 cut(s) | 560, 2025, 2027, 2054, 2393 |
| HinP1I | GCGC | 5 cut(s) | 560, 2025, 2027, 2054, 2393 |
| HincII | GTYRAC | 5 cut(s) | 742, 943, 1784, 2934, 3597 |
| HindII | GTYRAC | 5 cut(s) | 742, 943, 1784, 2934, 3597 |
| HindIII | AAGCTT | 3 cut(s) | 651, 1234, 1865 |
| HpaI | GTTAAC | 1 cut(s) | 3597 |
| HpaII | CCGG | 6 cut(s) | 86, 363, 371, 525, 683, 2051 |
| Hpy166II | GTNNAC | 9 cut(s) | 691, 742, 766, 943, 1784, 1895, 2934, 3452, 3597 |
| Hpy8I | GTNNAC | 9 cut(s) | 691, 742, 766, 943, 1784, 1895, 2934, 3452, 3597 |
| Hpy99I | CGWCG | 2 cut(s) | 149, 1600 |
| HpyCH4IV | ACGT | 4 cut(s) | 738, 1062, 1598, 2492 |
| HpySE526I | ACGT | 4 cut(s) | 738, 1062, 1598, 2492 |
| Hsp92I | GRCGYC | 2 cut(s) | 738, 1417 |
| HspAI | GCGC | 5 cut(s) | 560, 2025, 2027, 2054, 2393 |
| KflI | GGGWCCC | 1 cut(s) | 3408 |
| KpnI | GGTACC | 3 cut(s) | 889, 1818, 3736 |
| KroI | GCCGGC | 1 cut(s) | 2050 |
| KroNI | GCCGGC | 1 cut(s) | 2052 |
| Ksp22I | TGATCA | 2 cut(s) | 285, 1294 |
| KspAI | GTTAAC | 1 cut(s) | 3597 |
| KspI | CCGCGG | 1 cut(s) | 189 |
| LmnI | GCTCC | 6 cut(s) | 1046, 1393, 1665, 2465, 3706, 3828 |
| Lsp1109I | GCAGC | 9 cut(s) | 88, 110, 820, 823, 2402, 2722, 3302, 3547, 3912 |
| LweI | GCATC | 6 cut(s) | 235, 1883, 2002, 2997, 3607, 3824 |
| MaeI | CTAG | 5 cut(s) | 1098, 1433, 2499, 2714, 2922 |
| MaeII | ACGT | 4 cut(s) | 738, 1062, 1598, 2492 |
| MaeIII | GTNAC | 9 cut(s) | 781, 841, 1058, 1065, 1079, 1367, 1435, 1752, 3602 |
| MfeI | CAATTG | 1 cut(s) | 2039 |
| MflI | RGATCY | 8 cut(s) | 440, 1403, 1513, 3326, 3347, 3467, 3664, 3973 |
| MhlI | GDGCHC | 9 cut(s) | 1051, 1644, 1897, 2550, 2689, 2746, 2912, 3368, 3833 |
| MlsI | TGGCCA | 1 cut(s) | 2942 |
| MluNI | TGGCCA | 1 cut(s) | 2942 |
| MlyI | GAGTC | 5 cut(s) | 191, 281, 838, 2438, 3774 |
| MmeI | TCCRAC | 7 cut(s) | 168, 306, 1208, 1378, 1415, 1630, 2602 |
| Mox20I | TGGCCA | 1 cut(s) | 2942 |
| Mph1103I | ATGCAT | 1 cut(s) | 3012 |
| MroNI | GCCGGC | 1 cut(s) | 2050 |
| MroXI | GAANNNNTTC | 2 cut(s) | 3022, 3975 |
| MscI | TGGCCA | 1 cut(s) | 2942 |
| MslI | CAYNNNNRTG | 6 cut(s) | 751, 1200, 1466, 2883, 2942, 3590 |
| Msp20I | TGGCCA | 1 cut(s) | 2942 |
| MspA1I | CMGCKG | 3 cut(s) | 101, 188, 3254 |
| MspCI | CTTAAG | 1 cut(s) | 3218 |
| MspI | CCGG | 6 cut(s) | 86, 363, 371, 525, 683, 2051 |
| MunI | CAATTG | 1 cut(s) | 2039 |
| Mva1269I | GAATGC | 1 cut(s) | 3510 |
| MvnI | CGCG | 2 cut(s) | 188, 2027 |
| NaeI | GCCGGC | 1 cut(s) | 2052 |
| NciI | CCSGG | 3 cut(s) | 87, 364, 372 |
| NcoI | CCATGG | 1 cut(s) | 2937 |
| NdeI | CATATG | 1 cut(s) | 1384 |
| NgoMIV | GCCGGC | 1 cut(s) | 2050 |
| NheI | GCTAGC | 1 cut(s) | 2498 |
| NmeAIII | GCCGAG | 1 cut(s) | 724 |
| NmuCI | GTSAC | 4 cut(s) | 841, 1065, 1367, 3602 |
| NsbI | TGCGCA | 1 cut(s) | 561 |
| NsiI | ATGCAT | 1 cut(s) | 3012 |
| NspI | RCATGY | 6 cut(s) | 901, 1194, 2611, 3079, 3635, 3898 |
| NspV | TTCGAA | 1 cut(s) | 8 |
| OliI | CACNNNNGTG | 1 cut(s) | 3590 |
| PagI | TCATGA | 2 cut(s) | 310, 3979 |
| PaqCI | CACCTGC | 1 cut(s) | 373 |
| PauI | GCGCGC | 1 cut(s) | 2025 |
| PciI | ACATGT | 1 cut(s) | 897 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 126 |
| PctI | GAATGC | 1 cut(s) | 3510 |
| PdiI | GCCGGC | 1 cut(s) | 2052 |
| PdmI | GAANNNNTTC | 2 cut(s) | 3022, 3975 |
| Pfl23II | CGTACG | 1 cut(s) | 2493 |
| PflMI | CCANNNNNTGG | 6 cut(s) | 1160, 1174, 1397, 3613, 3760, 3953 |
| PfoI | TCCNGGA | 2 cut(s) | 2131, 3391 |
| PleI | GAGTC | 5 cut(s) | 190, 280, 838, 2437, 3773 |
| PpsI | GAGTC | 5 cut(s) | 190, 280, 838, 2437, 3773 |
| Ppu21I | YACGTR | 1 cut(s) | 1063 |
| PpuMI | RGGWCCY | 2 cut(s) | 3155, 3408 |
| PscI | ACATGT | 1 cut(s) | 897 |
| PshBI | ATTAAT | 1 cut(s) | 2232 |
| PsiI | TTATAA | 1 cut(s) | 1113 |
| Psp124BI | GAGCTC | 2 cut(s) | 2746, 3833 |
| Psp5II | RGGWCCY | 2 cut(s) | 3155, 3408 |
| PspEI | GGTNACC | 1 cut(s) | 3602 |
| PspFI | CCCAGC | 2 cut(s) | 1412, 3425 |
| PspLI | CGTACG | 1 cut(s) | 2493 |
| PspOMI | GGGCCC | 3 cut(s) | 1640, 2908, 3364 |
| PspPPI | RGGWCCY | 2 cut(s) | 3155, 3408 |
| PstI | CTGCAG | 2 cut(s) | 2392, 3292 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1010, 1535, 2444, 3032 |
| PsuI | RGATCY | 8 cut(s) | 440, 1403, 1513, 3326, 3347, 3467, 3664, 3973 |
| PteI | GCGCGC | 1 cut(s) | 2025 |
| PvuII | CAGCTG | 2 cut(s) | 101, 3254 |
| RsaI | GTAC | 9 cut(s) | 704, 887, 1341, 1816, 1980, 2495, 2648, 2818, 3734 |
| RsaNI | GTAC | 9 cut(s) | 703, 886, 1340, 1815, 1979, 2494, 2647, 2817, 3733 |
| RseI | CAYNNNNRTG | 6 cut(s) | 751, 1200, 1466, 2883, 2942, 3590 |
| SacI | GAGCTC | 2 cut(s) | 2746, 3833 |
| SacII | CCGCGG | 1 cut(s) | 189 |
| SalI | GTCGAC | 1 cut(s) | 2932 |
| ScaI | AGTACT | 2 cut(s) | 704, 2818 |
| SchI | GAGTC | 5 cut(s) | 191, 281, 838, 2438, 3774 |
| SduI | GDGCHC | 9 cut(s) | 1051, 1644, 1897, 2550, 2689, 2746, 2912, 3368, 3833 |
| SfaNI | GCATC | 6 cut(s) | 235, 1883, 2002, 2997, 3607, 3824 |
| SfcI | CTRYAG | 4 cut(s) | 1518, 2388, 3288, 3910 |
| Sfr303I | CCGCGG | 1 cut(s) | 189 |
| SfuI | TTCGAA | 1 cut(s) | 8 |
| SgrBI | CCGCGG | 1 cut(s) | 189 |
| SinI | GGWCC | 4 cut(s) | 79, 3155, 3395, 3408 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 751, 1200, 1466, 2883, 2942, 3590 |
| SmlI | CTYRAG | 3 cut(s) | 2726, 3218, 3322 |
| SmoI | CTYRAG | 3 cut(s) | 2726, 3218, 3322 |
| SpeI | ACTAGT | 1 cut(s) | 1097 |
| SspI | AATATT | 2 cut(s) | 2537, 2661 |
| SspMI | CTAG | 5 cut(s) | 1098, 1433, 2499, 2714, 2922 |
| SstI | GAGCTC | 2 cut(s) | 2746, 3833 |
| StyI | CCWWGG | 5 cut(s) | 153, 871, 1644, 1830, 2937 |
| TaiI | ACGT | 4 cut(s) | 741, 1065, 1601, 2495 |
| TaqI | TCGA | 8 cut(s) | 8, 275, 1801, 2427, 2488, 2811, 2933, 3627 |
| TatI | WGTACW | 3 cut(s) | 702, 1339, 2816 |
| TauI | GCSGC | 6 cut(s) | 98, 107, 110, 113, 191, 299 |
| TseFI | GTSAC | 4 cut(s) | 841, 1065, 1367, 3602 |
| TseI | GCWGC | 9 cut(s) | 98, 101, 808, 811, 2390, 2710, 3290, 3560, 3925 |
| Tsp45I | GTSAC | 4 cut(s) | 841, 1065, 1367, 3602 |
| TspGWI | ACGGA | 2 cut(s) | 53, 812 |
| Van91I | CCANNNNNTGG | 6 cut(s) | 1160, 1174, 1397, 3613, 3760, 3953 |
| Vha464I | CTTAAG | 1 cut(s) | 3218 |
| VneI | GTGCAC | 1 cut(s) | 1893 |
| VpaK11BI | GGWCC | 4 cut(s) | 79, 3155, 3395, 3408 |
| VspI | ATTAAT | 1 cut(s) | 2232 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1521, 1947, 3390 |
| XapI | RAATTY | 7 cut(s) | 496, 1226, 1543, 2293, 2422, 2770, 3775 |
| XceI | RCATGY | 6 cut(s) | 901, 1194, 2611, 3079, 3635, 3898 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 878 |
| XmiI | GTMKAC | 1 cut(s) | 2933 |
| XmnI | GAANNNNTTC | 2 cut(s) | 3022, 3975 |
| XspI | CTAG | 5 cut(s) | 1098, 1433, 2499, 2714, 2922 |
| ZraI | GACGTC | 1 cut(s) | 739 |
| ZrmI | AGTACT | 2 cut(s) | 704, 2818 |
| Zsp2I | ATGCAT | 1 cut(s) | 3012 |