Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8315573.1

Orthogroup ID

OG0001182

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 932

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8315573.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

aaggctaaattaggtgaagcgaataaattctactatgatgagaaactcaagcgatgggtcgaagaaggtgctgaacctccagctgaggaagcagccttaccaccacctccgccaacaactgcagctatccagaatagaatgcaagattacaacatgaatgatgcactgaaaactactagttttcatgcagttggtgggccagaaatcaaaagcccagcatcttccgagaattcaggagcaccgcccgttccacccagttcaaaccagttctctgcacgtgggcgtatgggtgttcgctcaaggtatgttgatacattcaacaagggcagtgcgaccccaggaaacttatttcagccaccatctcttccagctgctaaaccagggggtggttccaatcccaagtttttcatcccctctccagtaacttcttatcaggaaacagttcaaacaactgaaggaagcacacaagaatcttttgtgaccagtaacaatcctccaaaatcagtagacacattctctactccgccaacctcaacaccatcgtcaatgaccatgcaacggtttcctagcatggataacattgtacaaaagagagcaggagaattgacaaatggcagtagctttgttccacctgaatctcgtcgtgtggcatcatggagtggaagccttagtgaagcaagcaatccttcggtaaggagtgaaataaaaccaacagcacttggtatgtccccattgtcatatatgcctagtttttctccatcaatgcagtctgaaagaagcagtggtagtttgggggatgaccttcatgaagttgaactataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec16 Sec16_C

Protein Analysis

273

Amino Acids

29.19

Weight (kDa)

5.84

Isoelectric Point (pI)

70.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47480 AT5G47480 AT5G47490 AT5G47490 AT5G47490
fragaria_vesca	FvH4_5g19020 FvH4_5g19020 FvH4_5g19020 FvH4_5g19020 FvH4_5g19020 FvH4_5g19020 FvH4_7g11010 FvH4_7g11010 FvH4_7g11010
malus_domestica	MD00G1171200.v1.1 MD02G1211000.v1.1 MD06G1059400.v1.1 MD07G1114300.v1.1
prunus_persica	Prupe.2G136900_v2.0.a1 Prupe.2G136900_v2.0.a1 Prupe.5G070400_v2.0.a1 Prupe.5G070400_v2.0.a1 Prupe.5G070400_v2.0.a1
pyrus_communis	pycom02g17400 pycom06g04940 pycom07g09920 pycom976g00050
rosa_chinensis	RchiOBHm_Chr1g0349011 RchiOBHm_Chr7g0203401 RchiOBHm_Chr7g0203431
rosa_laevigata	RLG00000003530 RLG00000028612
rosa_multiflora	Rmu_co7982226.1_g000001 Rmu_co8315573.1_g000001 Rmu_sc0003347.1_g000007 Rmu_sc0003347.1_g000018 Rmu_sc0005723.1_g000007 Rmu_sc0009855.1_g000009 Rmu_sc0012988.1_g000001 Rmu_sc0018299.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253830 Rroxscaffold_4G00306240
rosa_rugosa	Rorug01G0199400 Rorug07G0075900
rosa_samantha	Rh1AG217000 Rh1BG182500 Rh1CG201300 Rh1DG212500 Rh7AG205400 Rh7BG205300 Rh7CG216800 Rh7CG217500 Rh7DG212100 Rh7DG212600
rosa_wichuraiana	Rw0G005400 Rw1G018450 Rw7G017950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	386
AccI	GTMKAC	1 cut(s)	507
AciI	CCGC	3 cut(s)	110, 242, 524
AcsI	RAATTY	2 cut(s)	26, 229
AcuI	CTGAAG	1 cut(s)	474
AcvI	CACGTG	1 cut(s)	278
AfaI	GTAC	1 cut(s)	585
AfiI	CCNNNNNNNGG	2 cut(s)	386, 558
AgsI	TTSAA	4 cut(s)	261, 319, 446, 815
AhlI	ACTAGT	1 cut(s)	176
AjnI	CCWGG	2 cut(s)	337, 379
AluBI	AGCT	4 cut(s)	83, 125, 371, 621
AluI	AGCT	4 cut(s)	83, 125, 371, 621
Alw21I	GWGCWC	1 cut(s)	241
AoxI	GGCC	1 cut(s)	197
ApeKI	GCWGC	3 cut(s)	92, 122, 371
ApoI	RAATTY	2 cut(s)	26, 229
Asp700I	GAANNNNTTC	2 cut(s)	26, 441
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	26
BarI	GAAGNNNNNNTAC	2 cut(s)	81, 113
BbrPI	CACGTG	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	241
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	3 cut(s)	104, 134, 358
BccI	CCATC	4 cut(s)	48, 367, 547, 766
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BciT130I	CCWGG	2 cut(s)	339, 381
BcuI	ACTAGT	1 cut(s)	176
BfaI	CTAG	3 cut(s)	177, 567, 747
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	3 cut(s)	93, 123, 372
BlsI	GCNGC	3 cut(s)	94, 124, 373
Bme1390I	CCNGG	2 cut(s)	339, 381
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	2 cut(s)	339, 381
BmrI	ACTGGG	1 cut(s)	249
BmsI	GCATC	3 cut(s)	151, 227, 659
BmuI	ACTGGG	1 cut(s)	249
BpmI	CTGGAG	2 cut(s)	63, 402
Bpu10I	CCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	2 cut(s)	32, 283
BsaAI	YACGTR	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	337, 380
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 558
Bse1I	ACTGG	4 cut(s)	255, 265, 419, 483
BseBI	CCWGG	2 cut(s)	339, 381
BseDI	CCNNGG	2 cut(s)	337, 380
BseGI	GGATG	2 cut(s)	408, 802
BseLI	CCNNNNNNNGG	2 cut(s)	386, 558
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	4 cut(s)	255, 265, 419, 483
BseXI	GCAGC	3 cut(s)	104, 134, 358
BseYI	CCCAGC	1 cut(s)	214
BsgI	GTGCAG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	712
BslI	CCNNNNNNNGG	2 cut(s)	386, 558
BsmFI	GGGAC	1 cut(s)	712
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp1407I	TGTACA	1 cut(s)	583
BspACI	CCGC	3 cut(s)	110, 242, 524
BspANI	GGCC	1 cut(s)	199
BspCNI	CTCAG	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	1 cut(s)	391
BspMAI	CTGCAG	1 cut(s)	124
BsrGI	TGTACA	1 cut(s)	583
BsrI	ACTGG	4 cut(s)	255, 265, 419, 483
BssECI	CCNNGG	2 cut(s)	337, 380
Bst2UI	CCWGG	2 cut(s)	339, 381
Bst4CI	ACNGT	2 cut(s)	442, 561
Bst6I	CTCTTC	1 cut(s)	369
BstAUI	TGTACA	1 cut(s)	583
BstBAI	YACGTR	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	679
BstDEI	CTNAG	2 cut(s)	84, 668
BstF5I	GGATG	2 cut(s)	408, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	2 cut(s)	339, 381
BstSCI	CCNGG	2 cut(s)	337, 379
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	104, 134, 358
BsuRI	GGCC	1 cut(s)	199
BtgZI	GCGATG	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	408, 802
BtsI	GCAGTG	2 cut(s)	334, 787
BtsIMutI	CAGTG	3 cut(s)	164, 334, 787
Cac8I	GCNNGC	1 cut(s)	679
CciI	TCATGA	1 cut(s)	805
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	584
CviAII	CATG	6 cut(s)	154, 185, 553, 571, 654, 806
CviQI	GTAC	1 cut(s)	584
DdeI	CTNAG	2 cut(s)	84, 668
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	2 cut(s)	99, 513
Eco57I	CTGAAG	1 cut(s)	474
Eco72I	CACGTG	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	337, 379
FaeI	CATG	6 cut(s)	157, 188, 556, 574, 657, 809
FalI	AAGNNNNNCTT	2 cut(s)	670, 702
FaqI	GGGAC	1 cut(s)	712
FatI	CATG	6 cut(s)	153, 184, 552, 570, 653, 805
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	3 cut(s)	93, 123, 372
FokI	GGATG	2 cut(s)	395, 809
Fsp4HI	GCNGC	3 cut(s)	93, 123, 372
FspBI	CTAG	3 cut(s)	177, 567, 747
GluI	GCNGC	3 cut(s)	93, 123, 372
GsaI	CCCAGC	1 cut(s)	218
GsuI	CTGGAG	2 cut(s)	63, 402
HaeIII	GGCC	1 cut(s)	199
Hin1II	CATG	6 cut(s)	157, 188, 556, 574, 657, 809
HinfI	GANTC	2 cut(s)	470, 635
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	2 cut(s)	226, 772
Hpy188III	TCNNGA	4 cut(s)	130, 234, 434, 806
Hpy8I	GTNNAC	1 cut(s)	508
Hpy99I	CGWCG	1 cut(s)	645
HpyAV	CCTTC	4 cut(s)	59, 449, 696, 812
HpyCH4III	ACNGT	2 cut(s)	442, 561
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	7 cut(s)	122, 142, 164, 188, 275, 556, 766
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	84, 668
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	6 cut(s)	157, 188, 556, 574, 657, 809
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	3 cut(s)	104, 134, 358
LweI	GCATC	3 cut(s)	151, 227, 659
MaeI	CTAG	3 cut(s)	177, 567, 747
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	3 cut(s)	421, 478, 485
MboII	GAAGA	3 cut(s)	74, 213, 356
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	4 cut(s)	8, 26, 229, 602
MnlI	CCTC	6 cut(s)	79, 87, 117, 424, 504, 541
MroXI	GAANNNNTTC	2 cut(s)	26, 441
MspA1I	CMGCKG	2 cut(s)	83, 371
MspR9I	CCNGG	2 cut(s)	339, 381
Mva1269I	GAATGC	1 cut(s)	144
MvaI	CCWGG	2 cut(s)	339, 381
MwoI	GCNNNNNNNGC	1 cut(s)	89
NlaIII	CATG	6 cut(s)	157, 188, 556, 574, 657, 809
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	478
PagI	TCATGA	1 cut(s)	805
PctI	GAATGC	1 cut(s)	144
PdmI	GAANNNNTTC	2 cut(s)	26, 441
PfeI	GAWTC	2 cut(s)	470, 635
PflMI	CCANNNNNTGG	1 cut(s)	386
PkrI	GCNGC	3 cut(s)	94, 124, 373
PmaCI	CACGTG	1 cut(s)	278
PmlI	CACGTG	1 cut(s)	278
Ppu21I	YACGTR	1 cut(s)	278
Psp6I	CCWGG	2 cut(s)	337, 379
PspCI	CACGTG	1 cut(s)	278
PspFI	CCCAGC	1 cut(s)	214
PspGI	CCWGG	2 cut(s)	337, 379
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	124
PvuII	CAGCTG	2 cut(s)	83, 371
RsaI	GTAC	1 cut(s)	585
RsaNI	GTAC	1 cut(s)	584
SatI	GCNGC	3 cut(s)	93, 123, 372
Sau96I	GGNCC	1 cut(s)	197
ScrFI	CCNGG	2 cut(s)	339, 381
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	3 cut(s)	151, 227, 659
SfcI	CTRYAG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	47, 298
SmoI	CTYRAG	2 cut(s)	47, 298
SpeI	ACTAGT	1 cut(s)	176
Sse9I	AATT	4 cut(s)	8, 26, 229, 602
SsiI	CCGC	3 cut(s)	110, 242, 524
SspMI	CTAG	3 cut(s)	177, 567, 747
StyD4I	CCNGG	2 cut(s)	337, 379
TaaI	ACNGT	2 cut(s)	442, 561
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	1 cut(s)	60
TasI	AATT	4 cut(s)	8, 26, 229, 602
TatI	WGTACW	1 cut(s)	583
TfiI	GAWTC	2 cut(s)	470, 635
TscAI	CASTG	3 cut(s)	171, 334, 787
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	3 cut(s)	92, 122, 371
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	5 cut(s)	170, 173, 397, 794, 822
TspRI	CASTG	3 cut(s)	171, 334, 787
Van91I	CCANNNNNTGG	1 cut(s)	386
XapI	RAATTY	2 cut(s)	26, 229
XmiI	GTMKAC	1 cut(s)	507
XmnI	GAANNNNTTC	2 cut(s)	26, 441
XspI	CTAG	3 cut(s)	177, 567, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.