FvH4_7g11010

Protein transport protein sec16

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
10323758 .. 10332733
8976 bp
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UTR
Exon/CDS
Intron
FvH4_7g11010.t1

Sequence Viewer

Length: 4920 bp
ATGGCAAGTTCTGCGTTTGAGTTGGATGATCAGACGGATGAGGATTTCTTTGACAAGTTGATTGATGATGATGACATTGATTTTTCGGGGTATGGGGGTAGTTCTGTAGCAAAGGTTGAGCTTGAGCTTGATGTGGTGAAAGAGATTTCGAAGTTGAGTATTTCGGATGTAGGTACCACTGGCAATGCTAGTTCTGGAGTTAATGGTGGGAAAGAAGGGGTTGTGCTGGAGCCGTCGGATCCACAGAAGGAGACTTTGAGCGGTGAAGAGAGCGAGGCTAGTGCATTGGTGGCCAAAGGGGAGGGAGGTGTAGTGGATGGTAGAGTGAGTACGAGTGGTGTTTCAGTTGATGATGAATTGGGGCATGGCAATGGGGTTTTGTTAGCATCGTTGGATCTACTCCAGGTTCCTGTGGTCGGTGAAGGGAGCAAGTTGTTAGTAGCGGAAAATAGAGATGAGGCAGTGGAGGATAAAGCTAGCAATGTGGCTAGTGCATTGGAGGGTAAAGGGGAGGAAAGTGCAGTAGATAGTACAGTTAGTAAGAATGTGGTGTCAGATGGGACAGGTGTCAAAGTAGTTCAATGGAGTTTGTTTAACTCAGATCCTTCTGGTGGTACTGGATTTGGGTCGTACTCAGATTTTTTTAGTGAAGTTGCAGATAATTCAGAAGACCCATTTGCCAATTTGGGTAATACAGACCAATCTAATGGTTTTCTGGAAAACTCAGTTTCTGCTTTCGGTAATTCTAGCTATGGGCAGCATCAAAAAGACTCATTTGCGAATTTGGGCAATACAGGCAAATTTGGGGCCGAAGCAGGTTTGACCACTGGTGTTTTGGAAAATGCTGCTTCTGATTTCCATCCGTCAAGCTATGAGCGGTATCAAGAAGACCCATTTGCGAATTTGGGTAATGCAAACCAATTTGTGGTTGAATCTAATGTGAGTAATGGTGTTCTGGAAAATTCGGTTTCTGGTTTACGTGCTTCTATCTGTGGGAAGCATCAAGAAGATCCTTTTGCGAATTTGGGTTATACAGACTACTCTGGGGCTGAATCTAATGTGAGTAACGGTGTGCTGGAGAACTCAGTTTCTGGTTTGGGTACTTCTAGCTATGGGCAGCATCAAGAAGGTCAAATCTATGGGGCTTCTGGGAATCAAAACTTAGACGGGCAGGAATTAAGTAGTAATCAGAATTCGGAAAATCTTTATCCGGGATGGAGGTACGATCCAACTACTGAGCAGTGGTATCAGTTGGAGGGATATGATGTGAATTCAAATACAACTGCAGAGGTGAACAACAATGTAAATTATCAATCTACAGATACTGCAGTTTTCTCAGCCCAGAAAGAAGATGCTCCTTATTCGCAGCAAGCAGTGGAGGCTGTTTCTCAAAGCGTGATTGATGCATCTGAAACTAGCACAGTTGCTAACTGGAATCAACATTCTTATGGGAACCCAGAATACCCTGCACATATGGTTTTTGATCCCCAGTACCCCGGTTGGTACTATGACACAATTAACAAAACATGGAGGGAATTGGAATCATCTGTTCCAGATTTTGATCAATCTACAAGTGTGGTTCATAATCAGCAACGTCAGCATACAAATATAGAGAGTCATGTATCACAGAGTCTGGGGACTCAACAAAGTGTTCCAATTTGGGGTGTAGCTACTAACACCTATGATCAGCAAAATGCAAGTACCTGGCATTCTGAGACTGTTGCCAAGAGTGGCACTATTGGTTTTGCTGAGAAACAGGAATCAAGAGAGTTTCAGCCTTTCACTCCATCTTTTCATCAGTCGACTCTAAGTATGGTTCATAATCAGCAATATAACAATACAAATGTTGACAACCTTGGATCACAGAGTCCGAACATTCAACAAAGTGTTTCAAACCGGGATGGATCTATGACCGCCTATGATCAGCAAAATACAAGTGTGTGGCATGCTCAGAAAGTTACCAATAGTGATACTGTTGGTTTTACTGAGAAACAGCCATACTTGGACCAGCAAATTTCAAAAGAGCATGCATTCAATTCTGTAAATCAACAAACAGGGTTCAGTCCTTCTGGATCAAGCGCTCTTCATCAAGACCTAAGTCGGGGCAATGATATTAGTAGTGCGAATGGTGGCTTCCAAAGGTTCAATCATGCTAACTTCTCTCAGCCTCAGGATCAAGTTAAGGTGCCAAACCAAGTGATGCATTTCTCACCTGCTAACTTTGGTAGTCAGATGCCAGTACAATTTTTCCAGCAGCCACTCCAGACTGGAACTCAGTTTTCACAAGAGGCCAGAGAGGGGAGGTCATCTGCTGGACGACCTGCACATGCGCTTGTTACTTTTGGATTTGGTGGAAAACTCGTAGTAATGAAAAATAATAGTTCTTTTCATGCCAACCAGACATATGGAAGCCAGGGCCCTGTAGAAGGTGTCATTAACATTCTCAATCTGATGGATGTTGTCACGGAGAAAAGTGAGGCTGCAAACTTTGGAACTGGTGGTTCTGATTATTTCAGTGCCTTGTGCCAGCAATCTTTTCCTGGACCTTTAGTTGGTGGGAATGTCAGTAATAAGGAATTAAACAAATGGATAGATGACAAAATTGCAAATTGTGATACTCTTGACATGGATTTCAAGAAAGGGGACCATATGAGACTGCTTTTCTCTTTACTAAAAATATCTTGGCAATTTTATGGAAAACTTCGATCTCCCTTTGGTACCGATCAAAGATTGAAGGAAAGTGATTGTCCAGAATCAGCTCTTGCTAATCTTTTTGCGTCTGCTAAAAGAAGTAATGAGTATGGTGCTCATAAGCAGCAGTGTGTGCATAACTTGCCCTCTGAGACACAGATTCAGGCTACTGCTCTTGAGGTGCAAAAGCTTCTTGTATCTGGTAGGAAGGATGAGGCTTTACAATGCGCTCAAGAAGGTCAATTGTGGGGACCAGCACTTGTTATTGCATCGCAACTTGGTGATCAGTTTTATTGTGATACTGTGAAGCATATGGCTCTAAACCAGTTGGTAGCAGGATCACCATTGCGGACATTGTGCTTATTGATCGCCAGGCAGCCAGCAGATGTGTTTTCCGATGCTACTGCAAATAGCAGTTTTCCTAGTGTCACAAATGTATCACAACAGCACGAACAGGTTGGAGCTAATTACATGTTAAATGACTGGGAAGAGAATCTAGCCATCTTAACTGCAAATAGAACAAAAGATGATGAGCTTGTTATCATCCATCTTGGAGATTCTTTATGGAAGGATAGGGGACAGATAACTGCTGCACACATATGTTATTTAGTTGCAGAAGCCAACCTCGAGCAATATTCAAATAGTTCAAGACTGTGTCTTATCGGTGCTGATCATTGGAAGTTTCCACGAACATATGCCAGTCCAGAGGCTATTCAGAGGACAGAGCTGTATGAATACTCGAAGGTAGTTGGAAATCCTCAGTTTCTTCTACTACCATTTCAGCCATATAAGCTTATTTATGCCCACATGCTGGCTGAAGTAGGCAAACTTGCTGATGCTTTGAAATATTGTCAAGCAATTTTGAAGGCTTTGAAAACTGGTCGAGCACCTGAGGTGGACATATGGAGAGAGTTAGTGTCATCTCTGGAGGAGAGGATAAGAGCCCACCAGCAGGGTGGTTATAGCATAAATTTGGCTCCAACCAAGTTGATGGGTAAATTGCGTACATTTATTGATACTACTGCTCATCGTGTTGTTGGGGGCCTACCTCCTCCTGTTCCATCAACAGCACCAGGCTTTGCTCAGCTTAATGAACAAGCTCTTCAACCAGGAAATGCAAATGTACCCAACAGTCAATCGACAATGGTTATGTCTTCGTTAATGCCGTCAGCATCAATGGAGCCAATAAGTGAAAGGATATCTGATAGTAACCAACTGAATATGCCCAACAGAAGCATTTCAGAGCCAGACTTTGGGAAAAGCCCGAGCAAGGTTGATTCATCCAAGAAAGTGAATGCCTCTACAACGCAACAAAAGGCGTCAGCATCTAGTGGGTCACGTTTTGGTTTTGGGTCACAGATATTTCAAAAGACTCTAGGACTGGTCATAAAATCCCGGTCAGATAAGCAGGCTAAATTGGGCGAAGCAAATAAATTTTATTATGATGAGAAACTCAAGCGATGGGTAGAAGAAGGTGCTGAACCTCCAGCTGAGGAAGCAGCCTTACCACCGCCTCCGCCAACTATGGCAGCTATCCAGAATAGAATGCAAGATTACAACGTGAATGATGCGCTGAAAACTACTAGTTTTCATGCAGTTGGTGGGCCAGAAATCAAAAGTCCAGCATCTTCTATGAGTTCAGGGTCACCACCGGTTCCACCCAGTTCAAACCAGTTCTCTGCACGTGGGCGTATGGGTGTTCGCTCGAGGTATGTTGATACATTCAACAAAGGCGGTGTGGCCCCAGGAAACTTATTTCAGCCACCATCTCTTCCAGCAGCTAAACCAGGGGGTGGTTCCAATCCCAAGTTTTTCATCCCCAGTCCAGTAACTTCCTATCAGGAAACAGTTCAAACAACTGGAGAAAGCACACAAGATACTTTTATGACCAAGAACAATCCTCCAAAATCAGTAGACACATTCTCTACTCCGCCAACCTCAACACCATCGTCAATGACCATGCAACGGTTTCCTAGCATGGATAACATTGTACAAAAGAAAGCAGGAGAATTGACAAATGGCAGTAGCTTTGTTCCGCCTGAATCTCGTCGAGTGGCGTCATGGAGCGGAAGCCTCAGTGAAGCAAGCAATCCTTCGATAAGGAATGAAACAAAATCAACAGCAGTAGGTATGTCCCCATTATCGTATATGCCTAGTGTTACTCCATCAATGCAGTTTCAAAGAAGCAGTGGTAGTTTTGGGGATGACCTTCAAGAAGTTGAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1640

Amino Acids

177.52

Weight (kDa)

4.9

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec16 PF12932 776 - 899 3.5e-20 Vesicle coat trafficking protein Sec16 mid-region
TPR_Sec16 PF12931 958 - 1244 4.3e-54 Sec16 Sec23-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2221
Acc36I ACCTGC 3 cut(s) 806, 2221, 2329
Acc65I GGTACC 2 cut(s) 173, 2717
AccB1I GGYRCC 3 cut(s) 173, 2185, 2717
AccB7I CCANNNNNTGG 4 cut(s) 925, 3502, 3944, 4484
AccBSI CCGCTC 3 cut(s) 261, 877, 4758
AccI GTMKAC 2 cut(s) 1802, 4605
AcoI YGGCCR 1 cut(s) 291
AcuI CTGAAG 1 cut(s) 3528
AcvI CACGTG 1 cut(s) 4376
AcyI GRCGYC 2 cut(s) 4010, 4748
AfeI AGCGCT 1 cut(s) 2080
AflIII ACRYGT 1 cut(s) 3162
AgeI ACCGGT 1 cut(s) 4342
AhlI ACTAGT 1 cut(s) 4274
AjnI CCWGG 9 cut(s) 402, 1703, 2412, 2539, 3062, 3763, 3799, 4435, 4477
Alw21I GWGCWC 2 cut(s) 2809, 3580
Alw26I GTCTC 4 cut(s) 245, 1709, 2647, 2837
AlwNI CAGNNNCTG 4 cut(s) 731, 1091, 1325, 1633
Ama87I CYCGRG 3 cut(s) 3317, 3955, 4396
Aor51HI AGCGCT 1 cut(s) 2080
AoxI GGCC 7 cut(s) 291, 807, 2289, 2416, 3733, 4295, 4431
ApaI GGGCCC 1 cut(s) 2420
AsiGI ACCGGT 1 cut(s) 4342
Asp700I GAANNNNTTC 2 cut(s) 3928, 4539
Asp718I GGTACC 2 cut(s) 173, 2717
AspLEI GCGC 4 cut(s) 2081, 2332, 2921, 4264
AsuC2I CCSGG 4 cut(s) 1212, 1497, 1898, 4087
AsuHPI GGTGA 8 cut(s) 148, 275, 431, 1303, 2202, 2984, 3024, 4329
AsuII TTCGAA 1 cut(s) 149
AsuNHI GCTAGC 1 cut(s) 476
AvaI CYCGRG 3 cut(s) 3317, 3955, 4396
AvaII GGWCC 4 cut(s) 2005, 2543, 2644, 2942
AxyI CCTNAGG 2 cut(s) 2169, 3582
BaeGI GKGCMC 1 cut(s) 2420
BaeI ACNNNNGTAYC 4 cut(s) 1314, 1347, 3111, 3144
BalI TGGCCA 1 cut(s) 293
BamHI GGATCC 1 cut(s) 238
BanI GGYRCC 3 cut(s) 173, 2185, 2717
BanII GRGCYC 2 cut(s) 2420, 3637
BarI GAAGNNNNNNTAC 2 cut(s) 4179, 4211
BbrPI CACGTG 1 cut(s) 4376
BbsI GAAGAC 3 cut(s) 675, 894, 3837
Bbv12I GWGCWC 2 cut(s) 2809, 3580
BbvCI CCTCAGC 1 cut(s) 4182
BceAI ACGGC 2 cut(s) 217, 3841
BcgI CGANNNNNNTGC 4 cut(s) 263, 297, 3077, 3111
BciT130I CCWGG 9 cut(s) 404, 1705, 2414, 2541, 3064, 3765, 3801, 4437, 4479
BclI TGATCA 6 cut(s) 28, 1561, 1684, 1921, 2974, 3361
BcnI CCSGG 4 cut(s) 1212, 1497, 1898, 4087
BcoDI GTCTC 4 cut(s) 245, 1709, 2647, 2837
BcuI ACTAGT 1 cut(s) 4274
BfmI CTRYAG 5 cut(s) 105, 1284, 1317, 1326, 2421
BfoI RGCGCY 1 cut(s) 2082
BfuAI ACCTGC 3 cut(s) 806, 2221, 2329
BlpI GCTNAGC 1 cut(s) 3774
Bme18I GGWCC 4 cut(s) 2005, 2543, 2644, 2942
BmeT110I CYCGRG 3 cut(s) 3317, 3955, 4396
BmrI ACTGGG 4 cut(s) 1483, 3184, 4347, 4506
BmtI GCTAGC 1 cut(s) 480
BmuI ACTGGG 4 cut(s) 1483, 3184, 4347, 4506
BoxI GACNNNNGTC 2 cut(s) 566, 2097
BpiI GAAGAC 3 cut(s) 675, 894, 3837
BpmI CTGGAG 8 cut(s) 216, 248, 386, 1097, 2246, 3638, 4161, 4572
Bpu10I CCTNAGC 1 cut(s) 4182
Bpu1102I GCTNAGC 1 cut(s) 3774
Bpu14I TTCGAA 1 cut(s) 149
BpuEI CTTGAG 4 cut(s) 143, 2888, 2907, 4130
BpuMI CCSGG 4 cut(s) 1212, 1497, 1898, 4087
BsaAI YACGTR 2 cut(s) 980, 4376
BsaBI GATNNNNATC 2 cut(s) 858, 1560
BsaHI GRCGYC 2 cut(s) 4010, 4748
BsaJI CCNNGG 5 cut(s) 1495, 1855, 2413, 4435, 4478
BsaWI WCCGGW 1 cut(s) 4342
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bse118I RCCGGY 1 cut(s) 4342
Bse21I CCTNAGG 2 cut(s) 2169, 3582
Bse3DI GCAATG 5 cut(s) 190, 376, 487, 2113, 3035
Bse8I GATNNNNATC 2 cut(s) 858, 1560
BseBI CCWGG 9 cut(s) 404, 1705, 2414, 2541, 3064, 3765, 3801, 4437, 4479
BseDI CCNNGG 5 cut(s) 1495, 1855, 2413, 4435, 4478
BseJI GATNNNNATC 2 cut(s) 858, 1560
BseMI GCAATG 5 cut(s) 190, 376, 487, 2113, 3035
BseRI GAGGAG 2 cut(s) 3635, 3732
BseSI GKGCMC 1 cut(s) 2420
BsgI GTGCAG 5 cut(s) 540, 1452, 2307, 3267, 4356
BshFI GGCC 7 cut(s) 293, 809, 2291, 2418, 3735, 4297, 4433
BshNI GGYRCC 3 cut(s) 173, 2185, 2717
BshTI ACCGGT 1 cut(s) 4342
BsiHKAI GWGCWC 2 cut(s) 2809, 3580
BsiHKCI CYCGRG 3 cut(s) 3317, 3955, 4396
BsiSI CCGG 5 cut(s) 1211, 1497, 1897, 4087, 4343
BslFI GGGAC 6 cut(s) 574, 1651, 2657, 2955, 3282, 4810
BsmAI GTCTC 4 cut(s) 245, 1709, 2647, 2837
BsmFI GGGAC 6 cut(s) 574, 1651, 2657, 2955, 3282, 4810
BsmI GAATGC 4 cut(s) 1708, 2030, 3991, 4242
BsnI GGCC 7 cut(s) 293, 809, 2291, 2418, 3735, 4297, 4433
BsoBI CYCGRG 3 cut(s) 3317, 3955, 4396
Bsp119I TTCGAA 1 cut(s) 149
Bsp120I GGGCCC 1 cut(s) 2416
Bsp1286I GDGCHC 4 cut(s) 2420, 2809, 3580, 3637
Bsp1407I TGTACA 1 cut(s) 4681
Bsp1720I GCTNAGC 1 cut(s) 3774
BspANI GGCC 7 cut(s) 293, 809, 2291, 2418, 3735, 4297, 4433
BspMAI CTGCAG 2 cut(s) 1288, 1330
BspMI ACCTGC 3 cut(s) 806, 2221, 2329
BspOI GCTAGC 1 cut(s) 480
BspQI GCTCTTC 2 cut(s) 2088, 3798
BspT104I TTCGAA 1 cut(s) 149
BspT107I GGYRCC 3 cut(s) 173, 2185, 2717
BsrBI CCGCTC 3 cut(s) 261, 877, 4758
BsrDI GCAATG 5 cut(s) 190, 376, 487, 2113, 3035
BsrFI RCCGGY 1 cut(s) 4342
BsrGI TGTACA 1 cut(s) 4681
BssAI RCCGGY 1 cut(s) 4342
BssECI CCNNGG 5 cut(s) 1495, 1855, 2413, 4435, 4478
BssNI GRCGYC 2 cut(s) 4010, 4748
BssT1I CCWWGG 1 cut(s) 1855
Bst2UI CCWGG 9 cut(s) 404, 1705, 2414, 2541, 3064, 3765, 3801, 4437, 4479
Bst6I CTCTTC 5 cut(s) 261, 2088, 3174, 3798, 4467
BstACI GRCGYC 2 cut(s) 4010, 4748
BstAPI GCANNNNNTGC 3 cut(s) 11, 2824, 2833
BstAUI TGTACA 1 cut(s) 4681
BstBAI YACGTR 2 cut(s) 980, 4376
BstBI TTCGAA 1 cut(s) 149
BstC8I GCNNGC 9 cut(s) 478, 1371, 1947, 2028, 2528, 3072, 3504, 4101, 4777
BstEII GGTNACC 1 cut(s) 4335
BstENI CCTNNNNNAGG 1 cut(s) 2424
BstH2I RGCGCY 1 cut(s) 2082
BstHHI GCGC 4 cut(s) 2081, 2332, 2921, 4264
BstMAI GTCTC 4 cut(s) 245, 1709, 2647, 2837
BstMWI GCNNNNNNNGC 9 cut(s) 11, 290, 795, 1379, 1597, 2824, 2833, 3481, 4187
BstNI CCWGG 9 cut(s) 404, 1705, 2414, 2541, 3064, 3765, 3801, 4437, 4479
BstNSI RCATGY 5 cut(s) 1949, 2030, 2330, 3166, 3502
BstPAI GACNNNNGTC 2 cut(s) 566, 2097
BstPI GGTNACC 1 cut(s) 4335
BstSFI CTRYAG 5 cut(s) 105, 1284, 1317, 1326, 2421
BstSLI GKGCMC 1 cut(s) 2420
BstV2I GAAGAC 3 cut(s) 675, 894, 3837
BstX2I RGATCY 5 cut(s) 238, 394, 601, 1009, 1904
BstXI CCANNNNNNTGG 4 cut(s) 707, 2405, 3647, 3682
BstYI RGATCY 5 cut(s) 238, 394, 601, 1009, 1904
Bsu36I CCTNAGG 2 cut(s) 2169, 3582
BsuRI GGCC 7 cut(s) 293, 809, 2291, 2418, 3735, 4297, 4433
BtgZI GCGATG 2 cut(s) 2946, 4165
BtsI GCAGTG 5 cut(s) 468, 1247, 1380, 2825, 4885
BtsIMutI CAGTG 9 cut(s) 177, 468, 825, 1247, 1380, 2521, 2825, 4774, 4885
BveI ACCTGC 3 cut(s) 806, 2221, 2329
Cac8I GCNNGC 9 cut(s) 478, 1371, 1947, 2028, 2528, 3072, 3504, 4101, 4777
CaiI CAGNNNCTG 4 cut(s) 731, 1091, 1325, 1633
CfoI GCGC 4 cut(s) 2081, 2332, 2921, 4264
Cfr10I RCCGGY 1 cut(s) 4342
CseI GACGC 3 cut(s) 2766, 3999, 4737
CspAI ACCGGT 1 cut(s) 4342
EaeI YGGCCR 1 cut(s) 291
Eam1104I CTCTTC 5 cut(s) 261, 2088, 3174, 3798, 4467
EarI CTCTTC 5 cut(s) 261, 2088, 3174, 3798, 4467
EciI GGCGGA 3 cut(s) 4197, 4611, 4716
Eco130I CCWWGG 1 cut(s) 1855
Eco24I GRGCYC 2 cut(s) 2420, 3637
Eco32I GATATC 1 cut(s) 3891
Eco47I GGWCC 4 cut(s) 2005, 2543, 2644, 2942
Eco47III AGCGCT 1 cut(s) 2080
Eco57I CTGAAG 1 cut(s) 3528
Eco72I CACGTG 1 cut(s) 4376
Eco81I CCTNAGG 2 cut(s) 2169, 3582
Eco88I CYCGRG 3 cut(s) 3317, 3955, 4396
Eco91I GGTNACC 1 cut(s) 4335
EcoNI CCTNNNNNAGG 1 cut(s) 2424
EcoO109I RGGNCCY 3 cut(s) 2416, 2417, 3733
EcoO65I GGTNACC 1 cut(s) 4335
EcoRI GAATTC 2 cut(s) 1192, 1270
EcoRII CCWGG 9 cut(s) 402, 1703, 2412, 2539, 3062, 3763, 3799, 4435, 4477
EcoRV GATATC 1 cut(s) 3891
EcoT14I CCWWGG 1 cut(s) 1855
EcoT22I ATGCAT 3 cut(s) 1408, 2032, 2205
EcoT38I GRGCYC 2 cut(s) 2420, 3637
ErhI CCWWGG 1 cut(s) 1855
FalI AAGNNNNNCTT 2 cut(s) 4768, 4800
FaqI GGGAC 6 cut(s) 574, 1651, 2657, 2955, 3282, 4810
FauNDI CATATG 7 cut(s) 1473, 2404, 2649, 3003, 3290, 3385, 3593
FbaI TGATCA 6 cut(s) 28, 1561, 1684, 1921, 2974, 3361
FblI GTMKAC 2 cut(s) 1802, 4605
FriOI GRGCYC 2 cut(s) 2420, 3637
GlaI GCGC 4 cut(s) 2080, 2331, 2920, 4263
GsuI CTGGAG 8 cut(s) 216, 248, 386, 1097, 2246, 3638, 4161, 4572
HaeII RGCGCY 1 cut(s) 2082
HaeIII GGCC 7 cut(s) 293, 809, 2291, 2418, 3735, 4297, 4433
HapII CCGG 5 cut(s) 1211, 1497, 1897, 4087, 4343
HgaI GACGC 3 cut(s) 2766, 3999, 4737
HhaI GCGC 4 cut(s) 2081, 2332, 2921, 4264
Hin1I GRCGYC 2 cut(s) 4010, 4748
Hin6I GCGC 4 cut(s) 2079, 2330, 2919, 4262
HinP1I GCGC 4 cut(s) 2079, 2330, 2919, 4262
HincII GTYRAC 2 cut(s) 1803, 1849
HindII GTYRAC 2 cut(s) 1803, 1849
HindIII AAGCTT 2 cut(s) 2879, 3482
HpaII CCGG 5 cut(s) 1211, 1497, 1897, 4087, 4343
HphI GGTGA 8 cut(s) 148, 275, 431, 1303, 2202, 2984, 3024, 4329
Hpy166II GTNNAC 6 cut(s) 977, 1294, 1803, 1849, 3589, 4606
Hpy8I GTNNAC 6 cut(s) 977, 1294, 1803, 1849, 3589, 4606
Hpy99I CGWCG 2 cut(s) 238, 4743
HpyCH4IV ACGT 5 cut(s) 979, 1594, 4030, 4251, 4375
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 290, 795, 1379, 1597, 2824, 2833, 3481, 4187
HpySE526I ACGT 5 cut(s) 979, 1594, 4030, 4251, 4375
Hsp92I GRCGYC 2 cut(s) 4010, 4748
HspAI GCGC 4 cut(s) 2079, 2330, 2919, 4262
KpnI GGTACC 2 cut(s) 177, 2721
Ksp22I TGATCA 6 cut(s) 28, 1561, 1684, 1921, 2974, 3361
LguI GCTCTTC 2 cut(s) 2088, 3798
LmnI GCTCC 7 cut(s) 229, 426, 1360, 3152, 3673, 3871, 4755
MaeII ACGT 5 cut(s) 979, 1594, 4030, 4251, 4375
MbiI CCGCTC 3 cut(s) 261, 877, 4758
MfeI CAATTG 1 cut(s) 2933
MflI RGATCY 5 cut(s) 238, 394, 601, 1009, 1904
MhlI GDGCHC 4 cut(s) 2420, 2809, 3580, 3637
MlsI TGGCCA 1 cut(s) 293
MluNI TGGCCA 1 cut(s) 293
MlyI GAGTC 7 cut(s) 764, 1624, 1633, 1639, 1798, 1876, 4057
MmeI TCCRAC 7 cut(s) 216, 372, 1233, 1253, 3130, 3421, 3695
Mox20I TGGCCA 1 cut(s) 293
Mph1103I ATGCAT 3 cut(s) 1408, 2032, 2205
MroXI GAANNNNTTC 2 cut(s) 3928, 4539
MscI TGGCCA 1 cut(s) 293
MslI CAYNNNNRTG 3 cut(s) 369, 1446, 3289
Msp20I TGGCCA 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 4181
MspI CCGG 5 cut(s) 1211, 1497, 1897, 4087, 4343
MunI CAATTG 1 cut(s) 2933
Mva1269I GAATGC 4 cut(s) 1708, 2030, 3991, 4242
MvaI CCWGG 9 cut(s) 404, 1705, 2414, 2541, 3064, 3765, 3801, 4437, 4479
MwoI GCNNNNNNNGC 9 cut(s) 11, 290, 795, 1379, 1597, 2824, 2833, 3481, 4187
NciI CCSGG 4 cut(s) 1212, 1497, 1898, 4087
NdeI CATATG 7 cut(s) 1473, 2404, 2649, 3003, 3290, 3385, 3593
NheI GCTAGC 1 cut(s) 476
NmuCI GTSAC 5 cut(s) 2461, 3118, 4026, 4044, 4335
NsiI ATGCAT 3 cut(s) 1408, 2032, 2205
NspI RCATGY 5 cut(s) 1949, 2030, 2330, 3166, 3502
NspV TTCGAA 1 cut(s) 149
PaeI GCATGC 2 cut(s) 1949, 2030
PaeR7I CTCGAG 2 cut(s) 3317, 4396
PaqCI CACCTGC 1 cut(s) 2221
PciI ACATGT 1 cut(s) 3162
PciSI GCTCTTC 2 cut(s) 2088, 3798
PcsI WCGNNNNNNNCGW 1 cut(s) 3854
PctI GAATGC 4 cut(s) 1708, 2030, 3991, 4242
PdmI GAANNNNTTC 2 cut(s) 3928, 4539
PflFI GACNNNGTC 1 cut(s) 3345
PflMI CCANNNNNTGG 4 cut(s) 925, 3502, 3944, 4484
PfoI TCCNGGA 2 cut(s) 1210, 2539
PinAI ACCGGT 1 cut(s) 4342
PleI GAGTC 7 cut(s) 764, 1623, 1633, 1638, 1798, 1875, 4057
PmaCI CACGTG 1 cut(s) 4376
PmlI CACGTG 1 cut(s) 4376
PpsI GAGTC 7 cut(s) 764, 1623, 1633, 1638, 1798, 1875, 4057
Ppu21I YACGTR 2 cut(s) 980, 4376
PscI ACATGT 1 cut(s) 3162
PshAI GACNNNNGTC 2 cut(s) 566, 2097
Psp6I CCWGG 9 cut(s) 402, 1703, 2412, 2539, 3062, 3763, 3799, 4435, 4477
PspCI CACGTG 1 cut(s) 4376
PspEI GGTNACC 1 cut(s) 4335
PspGI CCWGG 9 cut(s) 402, 1703, 2412, 2539, 3062, 3763, 3799, 4435, 4477
PspOMI GGGCCC 1 cut(s) 2416
PspXI VCTCGAGB 2 cut(s) 3317, 4396
PsrI GAACNNNNNNTAC 2 cut(s) 1445, 1477
PstI CTGCAG 2 cut(s) 1288, 1330
PstNI CAGNNNCTG 4 cut(s) 731, 1091, 1325, 1633
PsuI RGATCY 5 cut(s) 238, 394, 601, 1009, 1904
PsyI GACNNNGTC 1 cut(s) 3345
PvuII CAGCTG 1 cut(s) 4181
RseI CAYNNNNRTG 3 cut(s) 369, 1446, 3289
SalI GTCGAC 1 cut(s) 1801
SapI GCTCTTC 2 cut(s) 2088, 3798
SchI GAGTC 7 cut(s) 764, 1624, 1633, 1639, 1798, 1876, 4057
SduI GDGCHC 4 cut(s) 2420, 2809, 3580, 3637
SfcI CTRYAG 5 cut(s) 105, 1284, 1317, 1326, 2421
Sfr274I CTCGAG 2 cut(s) 3317, 4396
SfuI TTCGAA 1 cut(s) 149
SinI GGWCC 4 cut(s) 2005, 2543, 2644, 2942
SlaI CTCGAG 2 cut(s) 3317, 4396
SmiMI CAYNNNNRTG 3 cut(s) 369, 1446, 3289
SmlI CTYRAG 6 cut(s) 122, 2867, 2922, 3317, 4145, 4396
SmoI CTYRAG 6 cut(s) 122, 2867, 2922, 3317, 4145, 4396
SpeI ACTAGT 1 cut(s) 4274
SphI GCATGC 2 cut(s) 1949, 2030
SspI AATATT 2 cut(s) 3326, 3539
StyI CCWWGG 1 cut(s) 1855
TaiI ACGT 5 cut(s) 982, 1597, 4033, 4254, 4378
TatI WGTACW 3 cut(s) 530, 2239, 4681
TscAI CASTG 9 cut(s) 184, 468, 832, 1247, 1380, 2521, 2825, 4774, 4885
TseFI GTSAC 5 cut(s) 2461, 3118, 4026, 4044, 4335
Tsp45I GTSAC 5 cut(s) 2461, 3118, 4026, 4044, 4335
TspGWI ACGGA 3 cut(s) 50, 852, 2480
TspRI CASTG 9 cut(s) 184, 468, 832, 1247, 1380, 2521, 2825, 4774, 4885
Tth111I GACNNNGTC 1 cut(s) 3345
Van91I CCANNNNNTGG 4 cut(s) 925, 3502, 3944, 4484
VpaK11BI GGWCC 4 cut(s) 2005, 2543, 2644, 2942
XagI CCTNNNNNAGG 1 cut(s) 2424
XceI RCATGY 5 cut(s) 1949, 2030, 2330, 3166, 3502
XcmI CCANNNNNNNNNTGG 2 cut(s) 832, 3644
XhoI CTCGAG 2 cut(s) 3317, 4396
XmiI GTMKAC 2 cut(s) 1802, 4605
XmnI GAANNNNTTC 2 cut(s) 3928, 4539
Zsp2I ATGCAT 3 cut(s) 1408, 2032, 2205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.