AT5G48790

Domain of unknown function (DUF1995)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000465
Physical Location & Seq
Reverse (-)
19779860 .. 19782066
2207 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48790.2

Sequence Viewer

Length: 951 bp
ATGTCACCGTCCTTCTCCATCGCCACCACCGTCTCACCGGCTTCTCTAGCCGGGACTCTGGCCTCGAACTCAAAGAATGTTTTGTGTAGTTTACATTCAAAGAACAATGATATTACCAAGACAAATAGGAATCTGAAGTTTAGAGCTTGTTCTGTTTCTGGAGGGTATAACAACAATACATCTGTGGACAATGTACCTTTTCCTCGTGATTACGTCGAGCTCATTAATCAGGCCAAAGAAGCAGTGGAAATGGCTTTGAAGGATGAGAAACAGTTAATGGAAATTGAGTTCCCAACATCTGGTCTAGCATCTGTGCCAGGTGATGGTGAAGGAGCTACAGAAATGACAGAAAGTATAAATATGATACGCGAGTTTTGTGACCGACTATTAGCTCCTGAAAAGGCTCGAAGTACAAGAATTTTCTTCCCGGAAGCAAATGAAGTCAAATTTGCTCAAAAGACAGTCTTTGGAGGAACTTACTTCAAGTTGGACTATCTAACAAAACCATCTCTTTTTGAGGATTTTGGTTTCTTTGAGAGAGTAAAAATGGCAGATCGAGTGAAGCCAGAAGACGAACTGTTTCTTGTCGCATACCCGTATTTTAATGTCAACGAGATGCTTGTAGTGGAAGAGCTCTACAAGGAAGCTGTTGTGAACACTGACCGAAAACTAATCATCTTCAATGGAGAACTTGACCGCATACGATCGGGTTACTATCCAAAGTTCTTTTATCCGAAACTGGCTGCACTTACCAAGACACTTCTTCCAAAGATGGAGACAGTGTACTACATCCACAATTTCAAAGGACAGAAAGGAGGTGTACTTTTCAGATGTTATCCAGGTCCATGGCAAGTACTGAGGAGAACAAGGAACAAATACATTTGTGTTCATCAGCAAGAATCCATGCCTTCTCTTAAGGAAGTTGCCCTCGACATTCTTGCGTCCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1995

Protein Analysis

316

Amino Acids

35.86

Weight (kDa)

8.13

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1995 PF09353 68 - 236 1.8e-23 Domain of unknown function (DUF1995)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48790 AT5G48790 AT5G48790
fragaria_vesca FvH4_5g23760 FvH4_5g23760 FvH4_5g23770 FvH4_5g23771 FvH4_5g23790 FvH4_5g23800 FvH4_7g03421 FvH4_7g07510
malus_domestica MD00G1000600.v1.1 MD06G1013900.v1.1
prunus_persica Prupe.2G101800_v2.0.a1 Prupe.5G022600_v2.0.a1 Prupe.5G022700_v2.0.a1
pyrus_communis pycom07g06280 pycom16g25400
rosa_chinensis RchiOBHm_Chr1g0337881 RchiOBHm_Chr1g0339341 RchiOBHm_Chr7g0213081 RchiOBHm_Chr7g0213111 RchiOBHm_Chr7g0213141 RchiOBHm_Chr7g0213151 RchiOBHm_Chr7g0213161 RchiOBHm_Chr7g0213181
rosa_laevigata RLG00000002825 RLG00000002828 RLG00000002829 RLG00000002832 RLG00000029226
rosa_multiflora Rmu_co8345885.1_g000002 Rmu_co8348513.1_g000001 Rmu_co8456259.1_g000001 Rmu_sc0000613.1_g000002 Rmu_sc0001121.1_g000005 Rmu_sc0001121.1_g000006 Rmu_sc0002989.1_g000003 Rmu_sc0015110.1_g000001 Rmu_sc0030208.1_g000001 Rmu_sc0030209.1_g000001 Rmu_sc0032877.1_g000001 Rmu_sc0039394.1_g000001 Rmu_ssc0000084.1_g000002 Rmu_ssc0000084.1_g000007 Rmu_ssc0000084.1_g000009 Rmu_ssc0000084.1_g000012
rosa_roxburghii Rroxscaffold_3G00246200 Rroxscaffold_3G00246210 Rroxscaffold_3G00246240 Rroxscaffold_3G00246250 Rroxscaffold_4G00313440
rosa_rugosa Rorug01G0142600.1 Rorug07G0139400 Rorug07G0139500 Rorug07G0139600 Rorug07G0139700.1 Rorug07G0139800 Rorug07G0140100
rosa_samantha Rh1AG159300 Rh1BG126400 Rh1CG148500 Rh7AG270700 Rh7AG270800 Rh7AG271200 Rh7AG271400 Rh7AG271500 Rh7BG266400 Rh7BG266600 Rh7BG267000 Rh7BG267100 Rh7BG267200 Rh7BG267400 Rh7CG290000 Rh7CG290100 Rh7CG290600 Rh7CG290700 Rh7CG290800 Rh7DG278900 Rh7DG279200 Rh7DG279300 Rh7DG279400 Rh7DG279500 Rh7DG279600
rosa_wichuraiana Rw1G013550 Rw7G023520 Rw7G023530 Rw7G023540 Rw7G023550 Rw7G023560 Rw7G023580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 299, 323
AccII CGCG 1 cut(s) 369
AciI CCGC 2 cut(s) 697, 945
AcsI RAATTY 2 cut(s) 417, 446
AcuI CTGAAG 1 cut(s) 155
AfaI GTAC 5 cut(s) 195, 412, 785, 822, 855
AfiI CCNNNNNNNGG 2 cut(s) 299, 323
AflII CTTAAG 1 cut(s) 914
AgsI TTSAA 5 cut(s) 99, 259, 484, 682, 802
AjnI CCWGG 2 cut(s) 316, 838
AloI GAACNNNNNNTCC 2 cut(s) 272, 304
AluBI AGCT 6 cut(s) 146, 220, 335, 392, 634, 647
AluI AGCT 6 cut(s) 146, 220, 335, 392, 634, 647
Alw21I GWGCWC 2 cut(s) 222, 636
Alw26I GTCTC 2 cut(s) 37, 770
AoxI GGCC 2 cut(s) 60, 231
ApeKI GCWGC 1 cut(s) 743
ApoI RAATTY 2 cut(s) 417, 446
AseI ATTAAT 1 cut(s) 225
Asp700I GAANNNNTTC 1 cut(s) 579
AspS9I GGNCC 1 cut(s) 842
AsuC2I CCSGG 2 cut(s) 52, 428
AsuHPI GGTGA 3 cut(s) 27, 332, 338
AvaII GGWCC 1 cut(s) 842
BaeI ACNNNNGTAYC 2 cut(s) 356, 389
BanII GRGCYC 2 cut(s) 222, 636
BauI CACGAG 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 576
Bbv12I GWGCWC 2 cut(s) 222, 636
BbvI GCAGC 1 cut(s) 730
BccI CCATC 4 cut(s) 26, 317, 514, 766
BcgI CGANNNNNNTGC 1 cut(s) 920
BciT130I CCWGG 2 cut(s) 318, 840
BcnI CCSGG 2 cut(s) 52, 428
BcoDI GTCTC 2 cut(s) 37, 770
BfaI CTAG 2 cut(s) 47, 305
BfmI CTRYAG 1 cut(s) 336
BfrI CTTAAG 1 cut(s) 914
BisI GCNGC 1 cut(s) 744
BlsI GCNGC 1 cut(s) 745
BmcAI AGTACT 1 cut(s) 855
Bme1390I CCNGG 4 cut(s) 52, 318, 428, 840
Bme18I GGWCC 1 cut(s) 842
BmgT120I GGNCC 1 cut(s) 842
BmrFI CCNGG 4 cut(s) 52, 318, 428, 840
BmsI GCATC 2 cut(s) 317, 606
BpiI GAAGAC 1 cut(s) 576
BpmI CTGGAG 1 cut(s) 180
BpuMI CCSGG 2 cut(s) 52, 428
BsaJI CCNNGG 1 cut(s) 845
BsaXI ACNNNNNCTCC 2 cut(s) 767, 797
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 323
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 744
BseBI CCWGG 2 cut(s) 318, 840
BseDI CCNNGG 1 cut(s) 845
BseGI GGATG 2 cut(s) 268, 789
BseLI CCNNNNNNNGG 2 cut(s) 299, 323
BseMII CTCAG 1 cut(s) 848
BseNI ACTGG 1 cut(s) 744
BseRI GAGGAG 1 cut(s) 874
BseXI GCAGC 1 cut(s) 730
BsgI GTGCAG 1 cut(s) 729
Bsh1236I CGCG 1 cut(s) 369
Bsh1285I CGRYCG 1 cut(s) 707
BshFI GGCC 2 cut(s) 62, 233
BsiEI CGRYCG 1 cut(s) 707
BsiHKAI GWGCWC 2 cut(s) 222, 636
BsiSI CCGG 3 cut(s) 38, 51, 428
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 299, 323
BsmAI GTCTC 2 cut(s) 37, 770
BsmBI CGTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 2 cut(s) 62, 233
Bsp1286I GDGCHC 2 cut(s) 222, 636
Bsp143I GATC 2 cut(s) 553, 704
Bsp19I CCATGG 1 cut(s) 845
BspACI CCGC 2 cut(s) 697, 945
BspANI GGCC 2 cut(s) 62, 233
BspCNI CTCAG 1 cut(s) 849
BspFNI CGCG 1 cut(s) 369
BspQI GCTCTTC 1 cut(s) 624
BspTI CTTAAG 1 cut(s) 914
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 1 cut(s) 744
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 845
BssMI GATC 2 cut(s) 553, 704
BssSI CACGAG 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 845
Bst2BI CACGAG 1 cut(s) 204
Bst2UI CCWGG 2 cut(s) 318, 840
Bst4CI ACNGT 6 cut(s) 9, 31, 273, 463, 579, 781
Bst6I CTCTTC 1 cut(s) 624
BstAFI CTTAAG 1 cut(s) 914
BstDEI CTNAG 1 cut(s) 857
BstDSI CCRYGG 1 cut(s) 845
BstF5I GGATG 2 cut(s) 268, 789
BstFNI CGCG 1 cut(s) 369
BstKTI GATC 2 cut(s) 556, 707
BstMAI GTCTC 2 cut(s) 37, 770
BstMBI GATC 2 cut(s) 553, 704
BstMCI CGRYCG 1 cut(s) 707
BstMWI GCNNNNNNNGC 2 cut(s) 47, 239
BstNI CCWGG 2 cut(s) 318, 840
BstSCI CCNGG 4 cut(s) 50, 316, 426, 838
BstSFI CTRYAG 1 cut(s) 336
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 730
BstV2I GAAGAC 1 cut(s) 576
BstXI CCANNNNNNTGG 1 cut(s) 846
BsuRI GGCC 2 cut(s) 62, 233
BtgI CCRYGG 1 cut(s) 845
BtgZI GCGATG 1 cut(s) 4
BtsCI GGATG 2 cut(s) 268, 789
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 3 cut(s) 249, 657, 786
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 842
CseI GACGC 1 cut(s) 930
Csp6I GTAC 5 cut(s) 194, 411, 784, 821, 854
CviAII CATG 2 cut(s) 846, 904
CviQI GTAC 5 cut(s) 194, 411, 784, 821, 854
DdeI CTNAG 1 cut(s) 857
DpnI GATC 2 cut(s) 555, 706
DpnII GATC 2 cut(s) 553, 704
Eam1104I CTCTTC 1 cut(s) 624
EarI CTCTTC 1 cut(s) 624
Ecl136II GAGCTC 2 cut(s) 220, 634
Eco130I CCWWGG 1 cut(s) 845
Eco24I GRGCYC 2 cut(s) 222, 636
Eco47I GGWCC 1 cut(s) 842
Eco53kI GAGCTC 2 cut(s) 220, 634
Eco57I CTGAAG 1 cut(s) 155
EcoICRI GAGCTC 2 cut(s) 220, 634
EcoRII CCWGG 2 cut(s) 316, 838
EcoT14I CCWWGG 1 cut(s) 845
EcoT38I GRGCYC 2 cut(s) 222, 636
ErhI CCWWGG 1 cut(s) 845
Esp3I CGTCTC 1 cut(s) 37
FaeI CATG 2 cut(s) 849, 907
FaiI YATR 7 cut(s) 168, 356, 362, 592, 701, 847, 905
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FaqI GGGAC 1 cut(s) 67
FatI CATG 2 cut(s) 845, 903
Fnu4HI GCNGC 1 cut(s) 744
FokI GGATG 2 cut(s) 275, 776
FriOI GRGCYC 2 cut(s) 222, 636
Fsp4HI GCNGC 1 cut(s) 744
FspBI CTAG 2 cut(s) 47, 305
GluI GCNGC 1 cut(s) 744
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 2 cut(s) 62, 233
HapII CCGG 3 cut(s) 38, 51, 428
HgaI GACGC 1 cut(s) 930
Hin1II CATG 2 cut(s) 849, 907
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 3 cut(s) 55, 130, 899
HpaII CCGG 3 cut(s) 38, 51, 428
HphI GGTGA 3 cut(s) 27, 332, 338
Hpy166II GTNNAC 6 cut(s) 92, 187, 610, 655, 784, 821
Hpy188I TCNGA 3 cut(s) 135, 735, 830
Hpy188III TCNNGA 3 cut(s) 159, 206, 395
Hpy8I GTNNAC 6 cut(s) 92, 187, 610, 655, 784, 821
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 4 cut(s) 22, 253, 323, 918
HpyCH4III ACNGT 6 cut(s) 9, 31, 273, 463, 579, 781
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 1 cut(s) 746
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 239
HpyF3I CTNAG 1 cut(s) 857
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 2 cut(s) 849, 907
Kzo9I GATC 2 cut(s) 553, 704
LguI GCTCTTC 1 cut(s) 624
LmnI GCTCC 2 cut(s) 332, 397
Lsp1109I GCAGC 1 cut(s) 730
LweI GCATC 2 cut(s) 317, 606
MaeI CTAG 2 cut(s) 47, 305
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 3 cut(s) 3, 377, 710
MalI GATC 2 cut(s) 555, 706
MboI GATC 2 cut(s) 553, 704
MboII GAAGA 5 cut(s) 415, 581, 641, 670, 755
MhlI GDGCHC 2 cut(s) 222, 636
MluCI AATT 4 cut(s) 282, 417, 446, 796
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 468
MnlI CCTC 8 cut(s) 73, 155, 213, 464, 511, 809, 852, 938
MroXI GAANNNNTTC 1 cut(s) 579
MseI TTAA 4 cut(s) 225, 275, 603, 915
MspCI CTTAAG 1 cut(s) 914
MspI CCGG 3 cut(s) 38, 51, 428
MspR9I CCNGG 4 cut(s) 52, 318, 428, 840
MvaI CCWGG 2 cut(s) 318, 840
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 2 cut(s) 47, 239
NciI CCSGG 2 cut(s) 52, 428
NcoI CCATGG 1 cut(s) 845
NdeII GATC 2 cut(s) 553, 704
NlaIII CATG 2 cut(s) 849, 907
NmuCI GTSAC 2 cut(s) 3, 377
PciSI GCTCTTC 1 cut(s) 624
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 579
PfeI GAWTC 2 cut(s) 130, 899
PflMI CCANNNNNTGG 2 cut(s) 299, 323
PfoI TCCNGGA 1 cut(s) 426
PkrI GCNGC 1 cut(s) 745
Ple19I CGATCG 1 cut(s) 707
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PshBI ATTAAT 1 cut(s) 225
Psp124BI GAGCTC 2 cut(s) 222, 636
Psp6I CCWGG 2 cut(s) 316, 838
PspGI CCWGG 2 cut(s) 316, 838
PspPI GGNCC 1 cut(s) 842
PvuI CGATCG 1 cut(s) 707
RsaI GTAC 5 cut(s) 195, 412, 785, 822, 855
RsaNI GTAC 5 cut(s) 194, 411, 784, 821, 854
SacI GAGCTC 2 cut(s) 222, 636
SapI GCTCTTC 1 cut(s) 624
SaqAI TTAA 4 cut(s) 225, 275, 603, 915
SatI GCNGC 1 cut(s) 744
Sau3AI GATC 2 cut(s) 553, 704
Sau96I GGNCC 1 cut(s) 842
ScaI AGTACT 1 cut(s) 855
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 4 cut(s) 52, 318, 428, 840
SduI GDGCHC 2 cut(s) 222, 636
SfaNI GCATC 2 cut(s) 317, 606
SfcI CTRYAG 1 cut(s) 336
SinI GGWCC 1 cut(s) 842
SmlI CTYRAG 1 cut(s) 914
SmoI CTYRAG 1 cut(s) 914
Sse9I AATT 4 cut(s) 282, 417, 446, 796
SsiI CCGC 2 cut(s) 697, 945
SspMI CTAG 2 cut(s) 47, 305
SstI GAGCTC 2 cut(s) 222, 636
StyD4I CCNGG 4 cut(s) 50, 316, 426, 838
StyI CCWWGG 1 cut(s) 845
TaaI ACNGT 6 cut(s) 9, 31, 273, 463, 579, 781
TaiI ACGT 1 cut(s) 216
TaqI TCGA 5 cut(s) 65, 216, 406, 556, 930
TaqII GACCGA 2 cut(s) 396, 678
TasI AATT 4 cut(s) 282, 417, 446, 796
TatI WGTACW 4 cut(s) 410, 783, 820, 853
TfiI GAWTC 2 cut(s) 130, 899
Tru1I TTAA 4 cut(s) 225, 275, 603, 915
Tru9I TTAA 4 cut(s) 225, 275, 603, 915
TscAI CASTG 3 cut(s) 249, 664, 786
TseFI GTSAC 2 cut(s) 3, 377
TseI GCWGC 1 cut(s) 743
Tsp45I GTSAC 2 cut(s) 3, 377
TspDTI ATGAA 2 cut(s) 453, 878
TspRI CASTG 3 cut(s) 249, 664, 786
Van91I CCANNNNNTGG 2 cut(s) 299, 323
Vha464I CTTAAG 1 cut(s) 914
VpaK11BI GGWCC 1 cut(s) 842
VspI ATTAAT 1 cut(s) 225
XapI RAATTY 2 cut(s) 417, 446
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 579
XspI CTAG 2 cut(s) 47, 305
ZrmI AGTACT 1 cut(s) 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.