Rorug07G0139800

UDP-glucoronosyl and UDP-glucosyl transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000465
Physical Location & Seq
Forward (+)
11029057 .. 11029726
670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0139800.1

Sequence Viewer

Length: 348 bp
ATGTCTCACCTAACCAAGATCGTAGTCTTCTTGGTGATCGTACTTGTCTCCGAGTCCGCCATGGGTGCACCCGAGTGTGCGCCAATCCTCAGGACATTAGATCCCTGCCTTCCTTACCTGGTGCAGAACCCGGGCCGCGAGGACAGCCCATCCAAGGCTTGCTGCGACGGTCTCACAACACTCAGCGGGTTGCAGAATGTCAAGGATGAATGTGAGTGCATCAAGGCCACAGTGCTGTTGACGCCTTTAGATTTGCCTCGATTTGCTGCTCTCCCCAGTGTTTGTGGCACCACCTTGAAGATTCCGACCATCTCCGGCGACATGGATTGTTCTAAGATCAAGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

115

Amino Acids

12.26

Weight (kDa)

5.23

Isoelectric Point (pI)

55.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 13 - 100 9.6e-08 Probable lipid transfer
Tryp_alpha_amyl PF00234 26 - 110 2.3e-08 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48790 AT5G48790 AT5G48790
fragaria_vesca FvH4_5g23760 FvH4_5g23760 FvH4_5g23770 FvH4_5g23771 FvH4_5g23790 FvH4_5g23800 FvH4_7g03421 FvH4_7g07510
malus_domestica MD00G1000600.v1.1 MD06G1013900.v1.1
prunus_persica Prupe.2G101800_v2.0.a1 Prupe.5G022600_v2.0.a1 Prupe.5G022700_v2.0.a1
pyrus_communis pycom07g06280 pycom16g25400
rosa_chinensis RchiOBHm_Chr1g0337881 RchiOBHm_Chr1g0339341 RchiOBHm_Chr7g0213081 RchiOBHm_Chr7g0213111 RchiOBHm_Chr7g0213141 RchiOBHm_Chr7g0213151 RchiOBHm_Chr7g0213161 RchiOBHm_Chr7g0213181
rosa_laevigata RLG00000002825 RLG00000002828 RLG00000002829 RLG00000002832 RLG00000029226
rosa_multiflora Rmu_co8345885.1_g000002 Rmu_co8348513.1_g000001 Rmu_co8456259.1_g000001 Rmu_sc0000613.1_g000002 Rmu_sc0001121.1_g000005 Rmu_sc0001121.1_g000006 Rmu_sc0002989.1_g000003 Rmu_sc0015110.1_g000001 Rmu_sc0030208.1_g000001 Rmu_sc0030209.1_g000001 Rmu_sc0032877.1_g000001 Rmu_sc0039394.1_g000001 Rmu_ssc0000084.1_g000002 Rmu_ssc0000084.1_g000007 Rmu_ssc0000084.1_g000009 Rmu_ssc0000084.1_g000012
rosa_roxburghii Rroxscaffold_3G00246200 Rroxscaffold_3G00246210 Rroxscaffold_3G00246240 Rroxscaffold_3G00246250 Rroxscaffold_4G00313440
rosa_rugosa Rorug01G0142600.1 Rorug07G0139400 Rorug07G0139500 Rorug07G0139600 Rorug07G0139700.1 Rorug07G0139800 Rorug07G0140100
rosa_samantha Rh1AG159300 Rh1BG126400 Rh1CG148500 Rh7AG270700 Rh7AG270800 Rh7AG271200 Rh7AG271400 Rh7AG271500 Rh7BG266400 Rh7BG266600 Rh7BG267000 Rh7BG267100 Rh7BG267200 Rh7BG267400 Rh7CG290000 Rh7CG290100 Rh7CG290600 Rh7CG290700 Rh7CG290800 Rh7DG278900 Rh7DG279200 Rh7DG279300 Rh7DG279400 Rh7DG279500 Rh7DG279600
rosa_wichuraiana Rw1G013550 Rw7G023520 Rw7G023530 Rw7G023540 Rw7G023550 Rw7G023560 Rw7G023580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 287
AccII CGCG 1 cut(s) 138
AciI CCGC 3 cut(s) 57, 136, 186
AclWI GGATC 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 1 cut(s) 298
AjnI CCWGG 1 cut(s) 117
AleI CACNNNNGTG 1 cut(s) 73
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 3 cut(s) 9, 52, 176
Alw44I GTGCAC 1 cut(s) 66
AlwI GGATC 1 cut(s) 95
Ama87I CYCGRG 2 cut(s) 71, 130
AoxI GGCC 2 cut(s) 133, 225
ApaLI GTGCAC 1 cut(s) 66
ApeKI GCWGC 2 cut(s) 162, 266
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 133
AsuC2I CCSGG 2 cut(s) 131, 132
AsuHPI GGTGA 1 cut(s) 46
AvaI CYCGRG 2 cut(s) 71, 130
AxyI CCTNAGG 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 149, 253
BccI CCATC 2 cut(s) 157, 317
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 2 cut(s) 131, 132
BcoDI GTCTC 3 cut(s) 9, 52, 176
BisI GCNGC 3 cut(s) 136, 163, 267
BlsI GCNGC 3 cut(s) 137, 164, 268
Bme1390I CCNGG 3 cut(s) 119, 131, 132
BmeT110I CYCGRG 2 cut(s) 71, 130
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 3 cut(s) 119, 131, 132
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 228
BmuI ACTGGG 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 19
BpuMI CCSGG 2 cut(s) 131, 132
BsaHI GRCGYC 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 3 cut(s) 60, 130, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 276
Bse21I CCTNAGG 1 cut(s) 89
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 3 cut(s) 60, 130, 153
BseGI GGATG 2 cut(s) 149, 211
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 2 cut(s) 103, 196
BseNI ACTGG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 2 cut(s) 149, 253
BsgI GTGCAG 1 cut(s) 143
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 135, 227
BshNI GGYRCC 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 70
BsiHKCI CYCGRG 2 cut(s) 71, 130
BsiSI CCGG 2 cut(s) 131, 315
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 3 cut(s) 9, 52, 176
BsnI GGCC 2 cut(s) 135, 227
Bso31I GGTCTC 1 cut(s) 176
BsoBI CYCGRG 2 cut(s) 71, 130
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 4 cut(s) 18, 36, 100, 336
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 3 cut(s) 57, 136, 186
BspANI GGCC 2 cut(s) 135, 227
BspCNI CTCAG 2 cut(s) 102, 195
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 289
BspPI GGATC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 176
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 3 cut(s) 60, 130, 153
BssMI GATC 4 cut(s) 18, 36, 100, 336
BssNI GRCGYC 1 cut(s) 242
BssT1I CCWWGG 2 cut(s) 60, 153
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 2 cut(s) 170, 232
BstACI GRCGYC 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 3 cut(s) 89, 182, 333
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 149, 211
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 4 cut(s) 21, 39, 103, 339
BstMAI GTCTC 3 cut(s) 9, 52, 176
BstMBI GATC 4 cut(s) 18, 36, 100, 336
BstMWI GCNNNNNNNGC 3 cut(s) 65, 144, 241
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 3 cut(s) 117, 129, 130
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 149, 253
BstV2I GAAGAC 1 cut(s) 19
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
Bsu36I CCTNAGG 1 cut(s) 89
BsuRI GGCC 2 cut(s) 135, 227
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 149, 211
BtsIMutI CAGTG 2 cut(s) 237, 283
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 133
Cfr9I CCCGGG 1 cut(s) 130
CseI GACGC 1 cut(s) 250
CsiI ACCWGGT 1 cut(s) 117
Csp6I GTAC 1 cut(s) 41
CviAII CATG 2 cut(s) 61, 322
CviJI RGCY 4 cut(s) 135, 147, 158, 227
CviKI_1 RGCY 4 cut(s) 135, 147, 158, 227
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 3 cut(s) 89, 182, 333
DpnI GATC 4 cut(s) 20, 38, 102, 338
DpnII GATC 4 cut(s) 18, 36, 100, 336
EciI GGCGGA 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 60, 153
Eco31I GGTCTC 1 cut(s) 176
Eco81I CCTNAGG 1 cut(s) 89
Eco88I CYCGRG 2 cut(s) 71, 130
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 2 cut(s) 60, 153
ErhI CCWWGG 2 cut(s) 60, 153
FaeI CATG 2 cut(s) 64, 325
FaiI YATR 2 cut(s) 62, 323
FatI CATG 2 cut(s) 60, 321
FauI CCCGC 1 cut(s) 179
Fnu4HI GCNGC 3 cut(s) 136, 163, 267
FokI GGATG 2 cut(s) 136, 218
Fsp4HI GCNGC 3 cut(s) 136, 163, 267
GlaI GCGC 1 cut(s) 81
GluI GCNGC 3 cut(s) 136, 163, 267
HaeIII GGCC 2 cut(s) 135, 227
HapII CCGG 2 cut(s) 131, 315
HgaI GACGC 1 cut(s) 250
HhaI GCGC 1 cut(s) 82
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 2 cut(s) 64, 325
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HinfI GANTC 2 cut(s) 53, 301
HpaII CCGG 2 cut(s) 131, 315
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 2 cut(s) 68, 240
Hpy188I TCNGA 2 cut(s) 52, 306
Hpy188III TCNNGA 2 cut(s) 91, 340
Hpy8I GTNNAC 2 cut(s) 68, 240
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 2 cut(s) 170, 232
HpyCH4V TGCA 4 cut(s) 68, 124, 193, 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 144, 241
HpyF3I CTNAG 3 cut(s) 89, 182, 333
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 2 cut(s) 64, 325
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 4 cut(s) 18, 36, 100, 336
LpnPI CCDG 7 cut(s) 76, 104, 118, 131, 144, 289, 328
Lsp1109I GCAGC 2 cut(s) 149, 253
LweI GCATC 1 cut(s) 228
MabI ACCWGGT 1 cut(s) 117
MalI GATC 4 cut(s) 20, 38, 102, 338
MboI GATC 4 cut(s) 18, 36, 100, 336
MboII GAAGA 2 cut(s) 19, 310
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 70
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 329
MnlI CCTC 3 cut(s) 98, 133, 267
MslI CAYNNNNRTG 1 cut(s) 73
MspA1I CMGCKG 1 cut(s) 186
MspI CCGG 2 cut(s) 131, 315
MspR9I CCNGG 3 cut(s) 119, 131, 132
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 3 cut(s) 65, 144, 241
NciI CCSGG 2 cut(s) 131, 132
NcoI CCATGG 1 cut(s) 60
NdeII GATC 4 cut(s) 18, 36, 100, 336
NlaIII CATG 2 cut(s) 64, 325
NlaIV GGNNCC 1 cut(s) 289
OliI CACNNNNGTG 1 cut(s) 73
PfeI GAWTC 1 cut(s) 301
PkrI GCNGC 3 cut(s) 137, 164, 268
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 1 cut(s) 133
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 73
SatI GCNGC 3 cut(s) 136, 163, 267
Sau3AI GATC 4 cut(s) 18, 36, 100, 336
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 3 cut(s) 119, 131, 132
SduI GDGCHC 1 cut(s) 70
SetI ASST 3 cut(s) 12, 120, 296
SexAI ACCWGGT 1 cut(s) 117
SfaNI GCATC 1 cut(s) 228
SmaI CCCGGG 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 73
SsiI CCGC 3 cut(s) 57, 136, 186
StyD4I CCNGG 3 cut(s) 117, 129, 130
StyI CCWWGG 2 cut(s) 60, 153
TaaI ACNGT 2 cut(s) 170, 232
TaqI TCGA 1 cut(s) 259
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 1 cut(s) 301
TscAI CASTG 2 cut(s) 237, 283
TseI GCWGC 2 cut(s) 162, 266
TspDTI ATGAA 1 cut(s) 222
TspMI CCCGGG 1 cut(s) 130
TspRI CASTG 2 cut(s) 237, 283
VneI GTGCAC 1 cut(s) 66
XmaI CCCGGG 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.