FvH4_5g23760

Domain of unknown function (DUF1995)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000465
Physical Location & Seq
Forward (+)
15077672 .. 15081096
3425 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23760.t1

Sequence Viewer

Length: 969 bp
ATGCCCATCTCCGACGCCGGAACTGCCTCTCGGGTTCCGTTTGCAATTCCTTCTCTTCCAAGTCGCCAGGTTGCAACTGCTCTCAAATATTTGCCATTCAATTCTTATGGGAATTTGAGTTACCCCAAATGGGCTGCACCTCGTTTTTCTAGAAATCTCAAACTTGTGGCAAGTTCGGCTTCCGGGGATGACACATCAGTTGCCTTTGATGTGTCAATTCCTAGGGACTATGATGAGCTCCTTGAACAAGCCAGTAAAGCAACTCAATTGGCTTTGAACGATAACAAACAGTTGATGGAGATCGAGTTTCCTACTGCTGGACTTGACTCTGTACCAGGGGATGGTGAAGGAGGAATAGAAATGACTGGAAGTATACAGCTAATACGAGAATTTTGTGACATCTTGATATCTCCCGAGAAAGCCACACGGACCAGAATATTTTTTCCTGAGGCCAATGAAGTTGAATTTGCAAGGAAAGCAGCATTCGAAGGAGCACCCTTCAAGTTGGACTATCTGACTAAGCCATCATTTTTCGAGGATTTTGGTTTTACTGAGAAAGTAAAAATGACAGACCGTGTGAAGCCAAAAGATGAACTTTTCTTGGCTGCATATCCATATTTTAATGTCTCCGAAATGCTTGTGGTTGAAGAGCTGTACAGAGAAGCTGTTCTGAACACTTCCAGAAAGCTAATTATTTTCAACGGAGAACTTGACCGGATAAGATCTGGGTATTATCCATCTTTCTTCTACCCAAAGCTCGCCGCACTTTTGAAGACCCTGTTTCCAAGTATGGAGACTGTATACTACATCCACAACTTTAAAGGACGCAATGGAGGGACCCTTTTCAGGTGCTACCCAGGACCGTGGAAAGTCTTCAGAAAAGTGAGGAATAGATATATTTGTTTGCATCAGCAGGAAGCTATGCCATCTCTCAAGGAAGTTGCCTTGGAAATTCTTCCATCGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1995

Protein Analysis

323

Amino Acids

36.41

Weight (kDa)

6.78

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1995 PF09353 74 - 315 3.1e-43 Domain of unknown function (DUF1995)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48790 AT5G48790 AT5G48790
fragaria_vesca FvH4_5g23760 FvH4_5g23760 FvH4_5g23770 FvH4_5g23771 FvH4_5g23790 FvH4_5g23800 FvH4_7g03421 FvH4_7g07510
malus_domestica MD00G1000600.v1.1 MD06G1013900.v1.1
prunus_persica Prupe.2G101800_v2.0.a1 Prupe.5G022600_v2.0.a1 Prupe.5G022700_v2.0.a1
pyrus_communis pycom07g06280 pycom16g25400
rosa_chinensis RchiOBHm_Chr1g0337881 RchiOBHm_Chr1g0339341 RchiOBHm_Chr7g0213081 RchiOBHm_Chr7g0213111 RchiOBHm_Chr7g0213141 RchiOBHm_Chr7g0213151 RchiOBHm_Chr7g0213161 RchiOBHm_Chr7g0213181
rosa_laevigata RLG00000002825 RLG00000002828 RLG00000002829 RLG00000002832 RLG00000029226
rosa_multiflora Rmu_co8345885.1_g000002 Rmu_co8348513.1_g000001 Rmu_co8456259.1_g000001 Rmu_sc0000613.1_g000002 Rmu_sc0001121.1_g000005 Rmu_sc0001121.1_g000006 Rmu_sc0002989.1_g000003 Rmu_sc0015110.1_g000001 Rmu_sc0030208.1_g000001 Rmu_sc0030209.1_g000001 Rmu_sc0032877.1_g000001 Rmu_sc0039394.1_g000001 Rmu_ssc0000084.1_g000002 Rmu_ssc0000084.1_g000007 Rmu_ssc0000084.1_g000009 Rmu_ssc0000084.1_g000012
rosa_roxburghii Rroxscaffold_3G00246200 Rroxscaffold_3G00246210 Rroxscaffold_3G00246240 Rroxscaffold_3G00246250 Rroxscaffold_4G00313440
rosa_rugosa Rorug01G0142600.1 Rorug07G0139400 Rorug07G0139500 Rorug07G0139600 Rorug07G0139700.1 Rorug07G0139800 Rorug07G0140100
rosa_samantha Rh1AG159300 Rh1BG126400 Rh1CG148500 Rh7AG270700 Rh7AG270800 Rh7AG271200 Rh7AG271400 Rh7AG271500 Rh7BG266400 Rh7BG266600 Rh7BG267000 Rh7BG267100 Rh7BG267200 Rh7BG267400 Rh7CG290000 Rh7CG290100 Rh7CG290600 Rh7CG290700 Rh7CG290800 Rh7DG278900 Rh7DG279200 Rh7DG279300 Rh7DG279400 Rh7DG279500 Rh7DG279600
rosa_wichuraiana Rw1G013550 Rw7G023520 Rw7G023530 Rw7G023540 Rw7G023550 Rw7G023560 Rw7G023580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 341
AccI GTMKAC 2 cut(s) 373, 801
AciI CCGC 1 cut(s) 762
AcsI RAATTY 4 cut(s) 112, 389, 464, 951
AcuI CTGAAG 1 cut(s) 859
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 2 cut(s) 333, 656
AfiI CCNNNNNNNGG 4 cut(s) 130, 317, 341, 846
AgsI TTSAA 8 cut(s) 100, 245, 277, 464, 502, 647, 700, 772
AjnI CCWGG 3 cut(s) 66, 334, 856
AluBI AGCT 7 cut(s) 238, 379, 652, 665, 688, 757, 920
AluI AGCT 7 cut(s) 238, 379, 652, 665, 688, 757, 920
Alw21I GWGCWC 2 cut(s) 240, 496
Alw26I GTCTC 2 cut(s) 631, 788
Ama87I CYCGRG 2 cut(s) 30, 413
AoxI GGCC 1 cut(s) 450
ApeKI GCWGC 3 cut(s) 134, 479, 605
ApoI RAATTY 4 cut(s) 112, 389, 464, 951
Asp700I GAANNNNTTC 3 cut(s) 666, 872, 954
AspA2I CCTAGG 1 cut(s) 221
AspS9I GGNCC 3 cut(s) 429, 837, 860
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 356
AsuII TTCGAA 1 cut(s) 486
AvaI CYCGRG 2 cut(s) 30, 413
AvaII GGWCC 3 cut(s) 429, 837, 860
AvrII CCTAGG 1 cut(s) 221
AxyI CCTNAGG 1 cut(s) 447
BanII GRGCYC 1 cut(s) 240
BbsI GAAGAC 2 cut(s) 779, 865
Bbv12I GWGCWC 2 cut(s) 240, 496
BbvI GCAGC 3 cut(s) 121, 491, 592
BccI CCATC 7 cut(s) 14, 289, 335, 532, 745, 934, 967
BciT130I CCWGG 3 cut(s) 68, 336, 858
BcnI CCSGG 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 631, 788
BfaI CTAG 2 cut(s) 150, 222
BglII AGATCT 1 cut(s) 722
BisI GCNGC 4 cut(s) 135, 480, 606, 762
BlnI CCTAGG 1 cut(s) 221
BlsI GCNGC 4 cut(s) 136, 481, 607, 763
Bme1390I CCNGG 4 cut(s) 68, 184, 336, 858
Bme18I GGWCC 3 cut(s) 429, 837, 860
BmeT110I CYCGRG 2 cut(s) 30, 413
BmgT120I GGNCC 3 cut(s) 429, 837, 860
BmiI GGNNCC 3 cut(s) 36, 838, 839
BmrFI CCNGG 4 cut(s) 68, 184, 336, 858
BmsI GCATC 1 cut(s) 916
BpiI GAAGAC 2 cut(s) 779, 865
Bpu14I TTCGAA 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 917
BpuMI CCSGG 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 6 cut(s) 183, 221, 335, 856, 863, 945
BsaWI WCCGGW 1 cut(s) 714
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 317, 341, 846
Bse1I ACTGG 2 cut(s) 252, 370
Bse21I CCTNAGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 835
Bse8I GATNNNNATC 1 cut(s) 299
BseBI CCWGG 3 cut(s) 68, 336, 858
BseDI CCNNGG 6 cut(s) 183, 221, 335, 856, 863, 945
BseGI GGATG 3 cut(s) 193, 346, 807
BseJI GATNNNNATC 1 cut(s) 299
BseLI CCNNNNNNNGG 4 cut(s) 130, 317, 341, 846
BseMI GCAATG 1 cut(s) 835
BseMII CTCAG 2 cut(s) 438, 543
BseNI ACTGG 2 cut(s) 252, 370
BseXI GCAGC 3 cut(s) 121, 491, 592
BsgI GTGCAG 1 cut(s) 120
BshFI GGCC 1 cut(s) 452
BsiHKAI GWGCWC 2 cut(s) 240, 496
BsiHKCI CYCGRG 2 cut(s) 30, 413
BsiSI CCGG 3 cut(s) 18, 183, 715
BslFI GGGAC 2 cut(s) 239, 850
BslI CCNNNNNNNGG 4 cut(s) 130, 317, 341, 846
BsmAI GTCTC 2 cut(s) 631, 788
BsmFI GGGAC 2 cut(s) 239, 850
BsmI GAATGC 1 cut(s) 482
BsnI GGCC 1 cut(s) 452
BsoBI CYCGRG 2 cut(s) 30, 413
Bsp119I TTCGAA 1 cut(s) 486
Bsp1286I GDGCHC 2 cut(s) 240, 496
Bsp1407I TGTACA 1 cut(s) 654
Bsp143I GATC 2 cut(s) 300, 722
BspACI CCGC 1 cut(s) 762
BspANI GGCC 1 cut(s) 452
BspCNI CTCAG 2 cut(s) 439, 544
BspLI GGNNCC 3 cut(s) 36, 838, 839
BspQI GCTCTTC 1 cut(s) 642
BspT104I TTCGAA 1 cut(s) 486
BsrDI GCAATG 1 cut(s) 835
BsrGI TGTACA 1 cut(s) 654
BsrI ACTGG 2 cut(s) 252, 370
BssECI CCNNGG 6 cut(s) 183, 221, 335, 856, 863, 945
BssMI GATC 2 cut(s) 300, 722
BssNAI GTATAC 2 cut(s) 374, 802
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 2 cut(s) 221, 945
Bst1107I GTATAC 2 cut(s) 374, 802
Bst2UI CCWGG 3 cut(s) 68, 336, 858
Bst4CI ACNGT 4 cut(s) 291, 575, 799, 864
Bst6I CTCTTC 2 cut(s) 60, 642
BstACI GRCGYC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 654
BstBI TTCGAA 1 cut(s) 486
BstC8I GCNNGC 1 cut(s) 759
BstDEI CTNAG 3 cut(s) 447, 519, 552
BstDSI CCRYGG 1 cut(s) 863
BstF5I GGATG 3 cut(s) 193, 346, 807
BstKTI GATC 2 cut(s) 303, 725
BstMAI GTCTC 2 cut(s) 631, 788
BstMBI GATC 2 cut(s) 300, 722
BstMWI GCNNNNNNNGC 4 cut(s) 23, 176, 257, 476
BstNI CCWGG 3 cut(s) 68, 336, 858
BstSCI CCNGG 4 cut(s) 66, 182, 334, 856
BstV1I GCAGC 3 cut(s) 121, 491, 592
BstV2I GAAGAC 2 cut(s) 779, 865
BstX2I RGATCY 1 cut(s) 722
BstXI CCANNNNNNTGG 1 cut(s) 864
BstYI RGATCY 1 cut(s) 722
BstZ17I GTATAC 2 cut(s) 374, 802
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 1 cut(s) 452
BtgI CCRYGG 1 cut(s) 863
BtsCI GGATG 3 cut(s) 193, 346, 807
Cac8I GCNNGC 1 cut(s) 759
Cfr13I GGNCC 3 cut(s) 429, 837, 860
CseI GACGC 2 cut(s) 23, 834
Csp6I GTAC 2 cut(s) 332, 655
CviQI GTAC 2 cut(s) 332, 655
DdeI CTNAG 3 cut(s) 447, 519, 552
DpnI GATC 2 cut(s) 302, 724
DpnII GATC 2 cut(s) 300, 722
DraI TTTAAA 1 cut(s) 820
Eam1104I CTCTTC 2 cut(s) 60, 642
EarI CTCTTC 2 cut(s) 60, 642
Ecl136II GAGCTC 1 cut(s) 238
Eco130I CCWWGG 2 cut(s) 221, 945
Eco24I GRGCYC 1 cut(s) 240
Eco32I GATATC 1 cut(s) 408
Eco47I GGWCC 3 cut(s) 429, 837, 860
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 859
Eco81I CCTNAGG 1 cut(s) 447
Eco88I CYCGRG 2 cut(s) 30, 413
EcoICRI GAGCTC 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 837
EcoRII CCWGG 3 cut(s) 66, 334, 856
EcoRV GATATC 1 cut(s) 408
EcoT14I CCWWGG 2 cut(s) 221, 945
EcoT38I GRGCYC 1 cut(s) 240
ErhI CCWWGG 2 cut(s) 221, 945
FaiI YATR 9 cut(s) 108, 231, 374, 610, 616, 791, 802, 897, 923
FalI AAGNNNNNCTT 4 cut(s) 163, 195, 579, 611
FaqI GGGAC 2 cut(s) 239, 850
FblI GTMKAC 2 cut(s) 373, 801
Fnu4HI GCNGC 4 cut(s) 135, 480, 606, 762
FokI GGATG 3 cut(s) 200, 353, 794
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 4 cut(s) 135, 480, 606, 762
FspBI CTAG 2 cut(s) 150, 222
GluI GCNGC 4 cut(s) 135, 480, 606, 762
HaeIII GGCC 1 cut(s) 452
HapII CCGG 3 cut(s) 18, 183, 715
HgaI GACGC 2 cut(s) 23, 834
Hin1I GRCGYC 1 cut(s) 15
HinfI GANTC 1 cut(s) 326
HpaII CCGG 3 cut(s) 18, 183, 715
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 374, 802
Hpy188I TCNGA 5 cut(s) 13, 516, 631, 672, 878
Hpy188III TCNNGA 5 cut(s) 150, 403, 413, 446, 681
Hpy8I GTNNAC 2 cut(s) 374, 802
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 4 cut(s) 60, 341, 482, 508
HpyCH4III ACNGT 4 cut(s) 291, 575, 799, 864
HpyCH4V TGCA 6 cut(s) 44, 74, 137, 470, 608, 907
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 176, 257, 476
HpyF3I CTNAG 3 cut(s) 447, 519, 552
Hsp92I GRCGYC 1 cut(s) 15
KflI GGGWCCC 1 cut(s) 837
Kzo9I GATC 2 cut(s) 300, 722
LguI GCTCTTC 1 cut(s) 642
LmnI GCTCC 2 cut(s) 243, 491
Lsp1109I GCAGC 3 cut(s) 121, 491, 592
LweI GCATC 1 cut(s) 916
MaeI CTAG 2 cut(s) 150, 222
MaeIII GTNAC 2 cut(s) 119, 395
MalI GATC 2 cut(s) 302, 724
MboI GATC 2 cut(s) 300, 722
MboII GAAGA 6 cut(s) 47, 659, 736, 784, 865, 947
MfeI CAATTG 1 cut(s) 266
MflI RGATCY 1 cut(s) 722
MhlI GDGCHC 2 cut(s) 240, 496
MluCI AATT 9 cut(s) 45, 100, 112, 216, 266, 389, 464, 690, 951
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 2 cut(s) 36, 486
MnlI CCTC 7 cut(s) 37, 150, 344, 442, 529, 827, 879
MroXI GAANNNNTTC 3 cut(s) 666, 872, 954
MseI TTAA 2 cut(s) 621, 819
MspI CCGG 3 cut(s) 18, 183, 715
MspR9I CCNGG 4 cut(s) 68, 184, 336, 858
MunI CAATTG 1 cut(s) 266
Mva1269I GAATGC 1 cut(s) 482
MvaI CCWGG 3 cut(s) 68, 336, 858
MwoI GCNNNNNNNGC 4 cut(s) 23, 176, 257, 476
NciI CCSGG 1 cut(s) 184
NdeII GATC 2 cut(s) 300, 722
NlaIV GGNNCC 3 cut(s) 36, 838, 839
NmuCI GTSAC 1 cut(s) 395
NspV TTCGAA 1 cut(s) 486
PciSI GCTCTTC 1 cut(s) 642
PctI GAATGC 1 cut(s) 482
PdmI GAANNNNTTC 3 cut(s) 666, 872, 954
PflMI CCANNNNNTGG 1 cut(s) 341
PkrI GCNGC 4 cut(s) 136, 481, 607, 763
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
PpuMI RGGWCCY 1 cut(s) 837
Psp124BI GAGCTC 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 837
Psp6I CCWGG 3 cut(s) 66, 334, 856
PspGI CCWGG 3 cut(s) 66, 334, 856
PspN4I GGNNCC 3 cut(s) 36, 838, 839
PspPI GGNCC 3 cut(s) 429, 837, 860
PspPPI RGGWCCY 1 cut(s) 837
PsuI RGATCY 1 cut(s) 722
RsaI GTAC 2 cut(s) 333, 656
RsaNI GTAC 2 cut(s) 332, 655
SacI GAGCTC 1 cut(s) 240
SapI GCTCTTC 1 cut(s) 642
SaqAI TTAA 2 cut(s) 621, 819
SatI GCNGC 4 cut(s) 135, 480, 606, 762
Sau3AI GATC 2 cut(s) 300, 722
Sau96I GGNCC 3 cut(s) 429, 837, 860
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 4 cut(s) 68, 184, 336, 858
SduI GDGCHC 2 cut(s) 240, 496
SfaNI GCATC 1 cut(s) 916
SfuI TTCGAA 1 cut(s) 486
SinI GGWCC 3 cut(s) 429, 837, 860
SmlI CTYRAG 1 cut(s) 932
SmoI CTYRAG 1 cut(s) 932
Sse9I AATT 9 cut(s) 45, 100, 112, 216, 266, 389, 464, 690, 951
SsiI CCGC 1 cut(s) 762
SspI AATATT 2 cut(s) 89, 438
SspMI CTAG 2 cut(s) 150, 222
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 4 cut(s) 66, 182, 334, 856
StyI CCWWGG 2 cut(s) 221, 945
TaaI ACNGT 4 cut(s) 291, 575, 799, 864
TaqI TCGA 3 cut(s) 303, 486, 534
TasI AATT 9 cut(s) 45, 100, 112, 216, 266, 389, 464, 690, 951
TatI WGTACW 1 cut(s) 654
TauI GCSGC 1 cut(s) 764
Tru1I TTAA 2 cut(s) 621, 819
Tru9I TTAA 2 cut(s) 621, 819
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 3 cut(s) 134, 479, 605
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 2 cut(s) 471, 606
TspGWI ACGGA 3 cut(s) 27, 442, 717
Van91I CCANNNNNTGG 1 cut(s) 341
VpaK11BI GGWCC 3 cut(s) 429, 837, 860
XapI RAATTY 4 cut(s) 112, 389, 464, 951
XbaI TCTAGA 1 cut(s) 149
XmaJI CCTAGG 1 cut(s) 221
XmiI GTMKAC 2 cut(s) 373, 801
XmnI GAANNNNTTC 3 cut(s) 666, 872, 954
XspI CTAG 2 cut(s) 150, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.