RchiOBHm_Chr7g0213081

Domain of unknown function (DUF1995)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000465
Physical Location & Seq
Forward (+)
30241577 .. 30244869
3293 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19072

Sequence Viewer

Length: 975 bp
ATGCCCATCTCCGACGCCGGAACTGCTTCCAGGGTTCCGTTTGCTATTCCTTCTCTTCCAAGTCGCCAGCTGCAGGTTGCAACTGCCTGCAAATATTTGCCATTGAATTCTTATGGGAATTTGAGTACCCCCAAATGGGCTGCATCTCATTTTTCAAGAAATCTCAAACTTGTGGCAAGTTCGGCTTCCGGGGACGACACTTCGGTTGCCCTTGATGTGTCAATTCCTAGGGACTATGATGAACTCCTTGAACAAGCCAGTAAAGCAACTCAATTGGCTTTGAAGGATAACAAACAGTTGATGGAGATAGAGTTTCCTACTGCTGGACTTGACTCCGTACCAGGGGATGGTGAAGGAGGAATAGAAATGACTGGAAGTATACAGCTCATTCGAGAATTTTGTGACATCTTAATATCTCCAGAGAGAGCCATGCGGACCAGAATATTTTTTCCTGAGGCCAATGAAGTTGAATTTGCAAGAAAATCAGCATTCGAAGGAGCGTCCTTCAAGTTGGACTATCTGACTAAGCCATCATTTTTCGAGGATTTTGGTTTTACTGAGAAAGTGAAAATGACGGACCGTGTGAAGCCAGAAGATGAACTATTCTTGGCTGCATATCCATATTTTAATGTCTCCGAAATGCTTGTAGTCGAAGAGCTGTACAGAGAAGCTGTTGTGAACACTTCGAGAAAGCTAATTATTTTCAACGGAGAACTTGACCGAATAAGATCTGGGTATTATCCATCTTTCTTCTACCCAAAGCTCGCTGCACTTTTGAAGACCCTGTTTCCAAGTATGGAGACTGTATACTACATTCACAATTTTAAAGGACGCTCTGGAGGGACTCTTTTCAGGTGCTACCCAGGTCCATGGAAAGTCTTCAGAAAAGTGAGGAATAGATACATTTGTTTGCATCAGCAGGAAGCTATGCCATCTCTCAAAGAAGTTGCCTTGGAAATTCTTCCATCGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1995

Protein Analysis

324

Amino Acids

36.52

Weight (kDa)

6.06

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1995 PF09353 76 - 317 1.2e-42 Domain of unknown function (DUF1995)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48790 AT5G48790 AT5G48790
fragaria_vesca FvH4_5g23760 FvH4_5g23760 FvH4_5g23770 FvH4_5g23771 FvH4_5g23790 FvH4_5g23800 FvH4_7g03421 FvH4_7g07510
malus_domestica MD00G1000600.v1.1 MD06G1013900.v1.1
prunus_persica Prupe.2G101800_v2.0.a1 Prupe.5G022600_v2.0.a1 Prupe.5G022700_v2.0.a1
pyrus_communis pycom07g06280 pycom16g25400
rosa_chinensis RchiOBHm_Chr1g0337881 RchiOBHm_Chr1g0339341 RchiOBHm_Chr7g0213081 RchiOBHm_Chr7g0213111 RchiOBHm_Chr7g0213141 RchiOBHm_Chr7g0213151 RchiOBHm_Chr7g0213161 RchiOBHm_Chr7g0213181
rosa_laevigata RLG00000002825 RLG00000002828 RLG00000002829 RLG00000002832 RLG00000029226
rosa_multiflora Rmu_co8345885.1_g000002 Rmu_co8348513.1_g000001 Rmu_co8456259.1_g000001 Rmu_sc0000613.1_g000002 Rmu_sc0001121.1_g000005 Rmu_sc0001121.1_g000006 Rmu_sc0002989.1_g000003 Rmu_sc0015110.1_g000001 Rmu_sc0030208.1_g000001 Rmu_sc0030209.1_g000001 Rmu_sc0032877.1_g000001 Rmu_sc0039394.1_g000001 Rmu_ssc0000084.1_g000002 Rmu_ssc0000084.1_g000007 Rmu_ssc0000084.1_g000009 Rmu_ssc0000084.1_g000012
rosa_roxburghii Rroxscaffold_3G00246200 Rroxscaffold_3G00246210 Rroxscaffold_3G00246240 Rroxscaffold_3G00246250 Rroxscaffold_4G00313440
rosa_rugosa Rorug01G0142600.1 Rorug07G0139400 Rorug07G0139500 Rorug07G0139600 Rorug07G0139700.1 Rorug07G0139800 Rorug07G0140100
rosa_samantha Rh1AG159300 Rh1BG126400 Rh1CG148500 Rh7AG270700 Rh7AG270800 Rh7AG271200 Rh7AG271400 Rh7AG271500 Rh7BG266400 Rh7BG266600 Rh7BG267000 Rh7BG267100 Rh7BG267200 Rh7BG267400 Rh7CG290000 Rh7CG290100 Rh7CG290600 Rh7CG290700 Rh7CG290800 Rh7DG278900 Rh7DG279200 Rh7DG279300 Rh7DG279400 Rh7DG279500 Rh7DG279600
rosa_wichuraiana Rw1G013550 Rw7G023520 Rw7G023530 Rw7G023540 Rw7G023550 Rw7G023560 Rw7G023580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 64
AccB7I CCANNNNNTGG 1 cut(s) 347
AccI GTMKAC 2 cut(s) 379, 807
AciI CCGC 1 cut(s) 433
AcsI RAATTY 5 cut(s) 106, 118, 395, 470, 957
AcuI CTGAAG 1 cut(s) 865
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 3 cut(s) 127, 339, 662
AfiI CCNNNNNNNGG 6 cut(s) 73, 135, 136, 323, 342, 347
AgsI TTSAA 8 cut(s) 106, 156, 251, 283, 470, 508, 706, 778
AjnI CCWGG 3 cut(s) 29, 340, 862
AluBI AGCT 7 cut(s) 70, 385, 658, 671, 694, 763, 926
AluI AGCT 7 cut(s) 70, 385, 658, 671, 694, 763, 926
Alw26I GTCTC 2 cut(s) 637, 794
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 4 cut(s) 70, 140, 611, 767
ApoI RAATTY 5 cut(s) 106, 118, 395, 470, 957
Asp700I GAANNNNTTC 3 cut(s) 25, 878, 960
AspA2I CCTAGG 1 cut(s) 227
AspS9I GGNCC 3 cut(s) 435, 577, 866
AsuC2I CCSGG 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 362
AsuII TTCGAA 1 cut(s) 492
AvaII GGWCC 3 cut(s) 435, 577, 866
AvrII CCTAGG 1 cut(s) 227
AxyI CCTNAGG 1 cut(s) 453
BaeI ACNNNNGTAYC 2 cut(s) 892, 925
BbsI GAAGAC 2 cut(s) 785, 871
BbvI GCAGC 4 cut(s) 57, 127, 598, 754
BccI CCATC 7 cut(s) 14, 295, 341, 538, 751, 940, 973
BciT130I CCWGG 3 cut(s) 31, 342, 864
BcnI CCSGG 1 cut(s) 190
BcoDI GTCTC 2 cut(s) 637, 794
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 64
BglII AGATCT 1 cut(s) 728
BisI GCNGC 4 cut(s) 71, 141, 612, 768
BlnI CCTAGG 1 cut(s) 227
BlsI GCNGC 4 cut(s) 72, 142, 613, 769
Bme1390I CCNGG 4 cut(s) 31, 190, 342, 864
Bme18I GGWCC 3 cut(s) 435, 577, 866
BmgT120I GGNCC 3 cut(s) 435, 577, 866
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 4 cut(s) 31, 190, 342, 864
BmsI GCATC 2 cut(s) 152, 922
BpiI GAAGAC 2 cut(s) 785, 871
BpmI CTGGAG 2 cut(s) 402, 858
Bpu14I TTCGAA 1 cut(s) 492
BpuMI CCSGG 1 cut(s) 190
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 7 cut(s) 30, 189, 227, 341, 862, 869, 951
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 6 cut(s) 73, 135, 136, 323, 342, 347
Bse1I ACTGG 2 cut(s) 258, 376
Bse21I CCTNAGG 1 cut(s) 453
BseBI CCWGG 3 cut(s) 31, 342, 864
BseDI CCNNGG 7 cut(s) 30, 189, 227, 341, 862, 869, 951
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 6 cut(s) 73, 135, 136, 323, 342, 347
BseMII CTCAG 2 cut(s) 444, 549
BseNI ACTGG 2 cut(s) 258, 376
BseXI GCAGC 4 cut(s) 57, 127, 598, 754
BsgI GTGCAG 1 cut(s) 753
BshFI GGCC 1 cut(s) 458
BsiSI CCGG 2 cut(s) 18, 189
BslFI GGGAC 3 cut(s) 206, 245, 856
BslI CCNNNNNNNGG 6 cut(s) 73, 135, 136, 323, 342, 347
BsmAI GTCTC 2 cut(s) 637, 794
BsmFI GGGAC 3 cut(s) 206, 245, 856
BsmI GAATGC 1 cut(s) 488
BsnI GGCC 1 cut(s) 458
Bsp119I TTCGAA 1 cut(s) 492
Bsp1407I TGTACA 1 cut(s) 660
Bsp143I GATC 1 cut(s) 728
Bsp19I CCATGG 1 cut(s) 869
BspACI CCGC 1 cut(s) 433
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 2 cut(s) 445, 550
BspLI GGNNCC 1 cut(s) 36
BspMAI CTGCAG 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 64
BspQI GCTCTTC 1 cut(s) 648
BspT104I TTCGAA 1 cut(s) 492
BsrGI TGTACA 1 cut(s) 660
BsrI ACTGG 2 cut(s) 258, 376
BssECI CCNNGG 7 cut(s) 30, 189, 227, 341, 862, 869, 951
BssMI GATC 1 cut(s) 728
BssNAI GTATAC 2 cut(s) 380, 808
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 3 cut(s) 227, 869, 951
Bst1107I GTATAC 2 cut(s) 380, 808
Bst2UI CCWGG 3 cut(s) 31, 342, 864
Bst4CI ACNGT 3 cut(s) 297, 581, 805
Bst6I CTCTTC 2 cut(s) 60, 648
BstACI GRCGYC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 660
BstBI TTCGAA 1 cut(s) 492
BstC8I GCNNGC 3 cut(s) 68, 88, 765
BstDEI CTNAG 3 cut(s) 453, 525, 558
BstDSI CCRYGG 1 cut(s) 869
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 1 cut(s) 731
BstMAI GTCTC 2 cut(s) 637, 794
BstMBI GATC 1 cut(s) 728
BstMWI GCNNNNNNNGC 3 cut(s) 23, 182, 263
BstNI CCWGG 3 cut(s) 31, 342, 864
BstSCI CCNGG 4 cut(s) 29, 188, 340, 862
BstSFI CTRYAG 1 cut(s) 71
BstV1I GCAGC 4 cut(s) 57, 127, 598, 754
BstV2I GAAGAC 2 cut(s) 785, 871
BstX2I RGATCY 1 cut(s) 728
BstXI CCANNNNNNTGG 1 cut(s) 870
BstYI RGATCY 1 cut(s) 728
BstZ17I GTATAC 2 cut(s) 380, 808
Bsu36I CCTNAGG 1 cut(s) 453
BsuRI GGCC 1 cut(s) 458
BtgI CCRYGG 1 cut(s) 869
BtsCI GGATG 1 cut(s) 352
BveI ACCTGC 1 cut(s) 64
Cac8I GCNNGC 3 cut(s) 68, 88, 765
Cfr13I GGNCC 3 cut(s) 435, 577, 866
CpoI CGGWCCG 1 cut(s) 577
CseI GACGC 3 cut(s) 23, 489, 840
Csp6I GTAC 3 cut(s) 126, 338, 661
CspI CGGWCCG 1 cut(s) 577
CviAII CATG 2 cut(s) 430, 870
CviQI GTAC 3 cut(s) 126, 338, 661
DdeI CTNAG 3 cut(s) 453, 525, 558
DpnI GATC 1 cut(s) 730
DpnII GATC 1 cut(s) 728
DraI TTTAAA 1 cut(s) 826
Eam1104I CTCTTC 2 cut(s) 60, 648
EarI CTCTTC 2 cut(s) 60, 648
Eco130I CCWWGG 3 cut(s) 227, 869, 951
Eco47I GGWCC 3 cut(s) 435, 577, 866
Eco57I CTGAAG 1 cut(s) 865
Eco81I CCTNAGG 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 106
EcoRII CCWGG 3 cut(s) 29, 340, 862
EcoT14I CCWWGG 3 cut(s) 227, 869, 951
ErhI CCWWGG 3 cut(s) 227, 869, 951
FaeI CATG 2 cut(s) 433, 873
FalI AAGNNNNNCTT 2 cut(s) 169, 201
FaqI GGGAC 3 cut(s) 206, 245, 856
FatI CATG 2 cut(s) 429, 869
FblI GTMKAC 2 cut(s) 379, 807
Fnu4HI GCNGC 4 cut(s) 71, 141, 612, 768
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 4 cut(s) 71, 141, 612, 768
FspBI CTAG 1 cut(s) 228
GluI GCNGC 4 cut(s) 71, 141, 612, 768
GsuI CTGGAG 2 cut(s) 402, 858
HaeIII GGCC 1 cut(s) 458
HapII CCGG 2 cut(s) 18, 189
HgaI GACGC 3 cut(s) 23, 489, 840
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 2 cut(s) 433, 873
HinfI GANTC 2 cut(s) 332, 844
HpaII CCGG 2 cut(s) 18, 189
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 3 cut(s) 380, 679, 808
Hpy188I TCNGA 4 cut(s) 13, 522, 637, 884
Hpy188III TCNNGA 6 cut(s) 156, 392, 419, 452, 687, 837
Hpy8I GTNNAC 3 cut(s) 380, 679, 808
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 5 cut(s) 60, 277, 347, 488, 514
HpyCH4III ACNGT 3 cut(s) 297, 581, 805
HpyCH4V TGCA 8 cut(s) 73, 80, 90, 143, 476, 614, 770, 913
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 182, 263
HpyF3I CTNAG 3 cut(s) 453, 525, 558
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 2 cut(s) 433, 873
Kzo9I GATC 1 cut(s) 728
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 1 cut(s) 497
Lsp1109I GCAGC 4 cut(s) 57, 127, 598, 754
LweI GCATC 2 cut(s) 152, 922
MaeI CTAG 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 401
MalI GATC 1 cut(s) 730
MboI GATC 1 cut(s) 728
MboII GAAGA 7 cut(s) 47, 605, 665, 742, 790, 871, 953
MfeI CAATTG 1 cut(s) 272
MflI RGATCY 1 cut(s) 728
MluCI AATT 9 cut(s) 106, 118, 222, 272, 395, 470, 696, 820, 957
MlyI GAGTC 2 cut(s) 326, 838
MmeI TCCRAC 2 cut(s) 36, 492
MnlI CCTC 5 cut(s) 350, 448, 535, 833, 885
MroXI GAANNNNTTC 3 cut(s) 25, 878, 960
MseI TTAA 4 cut(s) 410, 627, 825, 973
MspA1I CMGCKG 1 cut(s) 70
MspI CCGG 2 cut(s) 18, 189
MspR9I CCNGG 4 cut(s) 31, 190, 342, 864
MunI CAATTG 1 cut(s) 272
Mva1269I GAATGC 1 cut(s) 488
MvaI CCWGG 3 cut(s) 31, 342, 864
MwoI GCNNNNNNNGC 3 cut(s) 23, 182, 263
NciI CCSGG 1 cut(s) 190
NcoI CCATGG 1 cut(s) 869
NdeII GATC 1 cut(s) 728
NlaIII CATG 2 cut(s) 433, 873
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 401
NspV TTCGAA 1 cut(s) 492
PciSI GCTCTTC 1 cut(s) 648
PctI GAATGC 1 cut(s) 488
PdmI GAANNNNTTC 3 cut(s) 25, 878, 960
PflMI CCANNNNNTGG 1 cut(s) 347
PkrI GCNGC 4 cut(s) 72, 142, 613, 769
PleI GAGTC 2 cut(s) 326, 838
PpsI GAGTC 2 cut(s) 326, 838
Psp6I CCWGG 3 cut(s) 29, 340, 862
PspGI CCWGG 3 cut(s) 29, 340, 862
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 3 cut(s) 435, 577, 866
PstI CTGCAG 1 cut(s) 75
PsuI RGATCY 1 cut(s) 728
PvuII CAGCTG 1 cut(s) 70
RsaI GTAC 3 cut(s) 127, 339, 662
RsaNI GTAC 3 cut(s) 126, 338, 661
Rsr2I CGGWCCG 1 cut(s) 577
RsrII CGGWCCG 1 cut(s) 577
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 4 cut(s) 410, 627, 825, 973
SatI GCNGC 4 cut(s) 71, 141, 612, 768
Sau3AI GATC 1 cut(s) 728
Sau96I GGNCC 3 cut(s) 435, 577, 866
SchI GAGTC 2 cut(s) 326, 838
ScrFI CCNGG 4 cut(s) 31, 190, 342, 864
SfaNI GCATC 2 cut(s) 152, 922
SfcI CTRYAG 1 cut(s) 71
SfuI TTCGAA 1 cut(s) 492
SinI GGWCC 3 cut(s) 435, 577, 866
Sse9I AATT 9 cut(s) 106, 118, 222, 272, 395, 470, 696, 820, 957
SsiI CCGC 1 cut(s) 433
SspI AATATT 2 cut(s) 95, 444
SspMI CTAG 1 cut(s) 228
StyD4I CCNGG 4 cut(s) 29, 188, 340, 862
StyI CCWWGG 3 cut(s) 227, 869, 951
TaaI ACNGT 3 cut(s) 297, 581, 805
TaqI TCGA 5 cut(s) 391, 492, 540, 651, 686
TaqII GACCGA 1 cut(s) 735
TasI AATT 9 cut(s) 106, 118, 222, 272, 395, 470, 696, 820, 957
TatI WGTACW 1 cut(s) 660
Tru1I TTAA 4 cut(s) 410, 627, 825, 973
Tru9I TTAA 4 cut(s) 410, 627, 825, 973
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 4 cut(s) 70, 140, 611, 767
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 3 cut(s) 255, 477, 612
TspGWI ACGGA 4 cut(s) 27, 325, 590, 723
Van91I CCANNNNNTGG 1 cut(s) 347
VpaK11BI GGWCC 3 cut(s) 435, 577, 866
XapI RAATTY 5 cut(s) 106, 118, 395, 470, 957
XmaJI CCTAGG 1 cut(s) 227
XmiI GTMKAC 2 cut(s) 379, 807
XmnI GAANNNNTTC 3 cut(s) 25, 878, 960
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.