Rroxscaffold_3G00246250

Domain of unknown function (DUF1995)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000465
Physical Location & Seq
Reverse (-)
39318998 .. 39322562
3565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00246250.1

Sequence Viewer

Length: 1038 bp
ATGCCCATCTCCGACGCCGGAACTGCCTCCAGGGTTCCGTATGCTATTCCTTCTCTTCCAAGTCGCCAGGTTGCAACTGCCTGCAAATATTTGCCATTGAATTCTTATGGGAATTTGAGTACCCCAAAATGGGCTGCATCTCATTTGTCAAGAAATCTCAAACTTGTGGCAAGTTCGGCTTCCGGGGACGACACTTCGGTTGCCCTTGATGTGTCAATTCCCAGGGACTATGATGAACTCCTTGAACAAGCCAGTAAAGCAACTCAATTGGCTTTGAAGGATAACAAACAGTTGATGGAGATCGAGTTTCCTACTGCTGGACTTGACTCTGTACCAGGGGACGGTGAAGGAGGAATAGAAATGACTGGAAGTATACACCTCATTCGAGAATTTTGTGACATCTTAATATCTCCAGAGAAAGCCACGCGGACCAGAATATTTTTTCCTGAGGCCAATGAAGTAGAATTTGCAAGGAAATCAGCATTCGAAGGAGCGTCCTTCAAGTTGGACTATCTGACTAAGCCATCGTTTTTTGAGGATTTTGGTTTTACTGAGAAAGTGAAAATGACGGACCGTGTGAAGCCAGAAGATGAACTATTCTTGGCTGCATATCCATATTTTAATGTCTCCGGTAACTCCAAGTATCCCTTCTTCTCATTGTTAGGAAAGTTGAATGCTGCAGAAACACATATTAAGAAAATGCTTGTAGTCGAAGAGCTGTACAGAGAAGCTGTTGTGAACACTTCCAGAAAGCTAATTATTTTCAACGGAGAACTTGACCGAATAAGATCTGGGTATTATCCATCTTTCTTCTACCCAAAGCTCGCTGCACTTTTGAAGACCCTGTTTCCAAGTATGGAGACTGTATACTACATTCACAATTTTAAAGGATGCTCTGGAGGGACCCTTTTCAGGTGCTACCCAGGCCCATGGAAAGTCTTCAGAAAAGTGAGGAATAGATACATTTGTTTGCATCAGCAGGAAGCTATGCCATCTCTCAAGGAAGTTGCCTTGGAAATTCTTCCAGGTAAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1995

Protein Analysis

345

Amino Acids

38.72

Weight (kDa)

8.12

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1995 PF09353 74 - 337 3.9e-37 Domain of unknown function (DUF1995)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48790 AT5G48790 AT5G48790
fragaria_vesca FvH4_5g23760 FvH4_5g23760 FvH4_5g23770 FvH4_5g23771 FvH4_5g23790 FvH4_5g23800 FvH4_7g03421 FvH4_7g07510
malus_domestica MD00G1000600.v1.1 MD06G1013900.v1.1
prunus_persica Prupe.2G101800_v2.0.a1 Prupe.5G022600_v2.0.a1 Prupe.5G022700_v2.0.a1
pyrus_communis pycom07g06280 pycom16g25400
rosa_chinensis RchiOBHm_Chr1g0337881 RchiOBHm_Chr1g0339341 RchiOBHm_Chr7g0213081 RchiOBHm_Chr7g0213111 RchiOBHm_Chr7g0213141 RchiOBHm_Chr7g0213151 RchiOBHm_Chr7g0213161 RchiOBHm_Chr7g0213181
rosa_laevigata RLG00000002825 RLG00000002828 RLG00000002829 RLG00000002832 RLG00000029226
rosa_multiflora Rmu_co8345885.1_g000002 Rmu_co8348513.1_g000001 Rmu_co8456259.1_g000001 Rmu_sc0000613.1_g000002 Rmu_sc0001121.1_g000005 Rmu_sc0001121.1_g000006 Rmu_sc0002989.1_g000003 Rmu_sc0015110.1_g000001 Rmu_sc0030208.1_g000001 Rmu_sc0030209.1_g000001 Rmu_sc0032877.1_g000001 Rmu_sc0039394.1_g000001 Rmu_ssc0000084.1_g000002 Rmu_ssc0000084.1_g000007 Rmu_ssc0000084.1_g000009 Rmu_ssc0000084.1_g000012
rosa_roxburghii Rroxscaffold_3G00246200 Rroxscaffold_3G00246210 Rroxscaffold_3G00246240 Rroxscaffold_3G00246250 Rroxscaffold_4G00313440
rosa_rugosa Rorug01G0142600.1 Rorug07G0139400 Rorug07G0139500 Rorug07G0139600 Rorug07G0139700.1 Rorug07G0139800 Rorug07G0140100
rosa_samantha Rh1AG159300 Rh1BG126400 Rh1CG148500 Rh7AG270700 Rh7AG270800 Rh7AG271200 Rh7AG271400 Rh7AG271500 Rh7BG266400 Rh7BG266600 Rh7BG267000 Rh7BG267100 Rh7BG267200 Rh7BG267400 Rh7CG290000 Rh7CG290100 Rh7CG290600 Rh7CG290700 Rh7CG290800 Rh7DG278900 Rh7DG279200 Rh7DG279300 Rh7DG279400 Rh7DG279500 Rh7DG279600
rosa_wichuraiana Rw1G013550 Rw7G023520 Rw7G023530 Rw7G023540 Rw7G023550 Rw7G023560 Rw7G023580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 373, 867
AccII CGCG 1 cut(s) 427
AciI CCGC 1 cut(s) 427
AcsI RAATTY 5 cut(s) 100, 112, 389, 464, 1017
AcuI CTGAAG 1 cut(s) 925
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 3 cut(s) 121, 333, 722
AfiI CCNNNNNNNGG 5 cut(s) 129, 130, 317, 341, 912
AgsI TTSAA 7 cut(s) 100, 245, 277, 502, 673, 766, 838
AjnI CCWGG 6 cut(s) 29, 66, 221, 334, 922, 1024
AjuI GAANNNNNNNTTGG 2 cut(s) 632, 664
AluBI AGCT 5 cut(s) 718, 731, 754, 823, 986
AluI AGCT 5 cut(s) 718, 731, 754, 823, 986
Alw26I GTCTC 2 cut(s) 631, 854
AoxI GGCC 2 cut(s) 450, 925
ApeKI GCWGC 4 cut(s) 134, 605, 677, 827
ApoI RAATTY 5 cut(s) 100, 112, 389, 464, 1017
Asp700I GAANNNNTTC 2 cut(s) 938, 1020
AspS9I GGNCC 4 cut(s) 429, 571, 903, 926
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 356
AsuII TTCGAA 1 cut(s) 486
AvaII GGWCC 3 cut(s) 429, 571, 903
AxyI CCTNAGG 1 cut(s) 447
BaeI ACNNNNGTAYC 2 cut(s) 952, 985
BarI GAAGNNNNNNTAC 2 cut(s) 635, 667
BbsI GAAGAC 2 cut(s) 845, 931
BbvI GCAGC 4 cut(s) 121, 592, 664, 814
BccI CCATC 5 cut(s) 14, 289, 532, 811, 1000
BciT130I CCWGG 6 cut(s) 31, 68, 223, 336, 924, 1026
BciVI GTATCC 1 cut(s) 654
BcnI CCSGG 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 631, 854
BfaI CTAG 1 cut(s) 1036
BfmI CTRYAG 1 cut(s) 678
BfuI GTATCC 1 cut(s) 654
BglII AGATCT 1 cut(s) 788
BisI GCNGC 4 cut(s) 135, 606, 678, 828
BlsI GCNGC 4 cut(s) 136, 607, 679, 829
Bme1390I CCNGG 7 cut(s) 31, 68, 184, 223, 336, 924, 1026
Bme18I GGWCC 3 cut(s) 429, 571, 903
BmgT120I GGNCC 4 cut(s) 429, 571, 903, 926
BmiI GGNNCC 3 cut(s) 36, 904, 905
BmrFI CCNGG 7 cut(s) 31, 68, 184, 223, 336, 924, 1026
BmsI GCATC 3 cut(s) 146, 881, 982
BpiI GAAGAC 2 cut(s) 845, 931
BpmI CTGGAG 3 cut(s) 13, 396, 918
Bpu14I TTCGAA 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 983
BpuMI CCSGG 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 8 cut(s) 30, 183, 221, 222, 335, 922, 929, 1011
BsaWI WCCGGW 1 cut(s) 629
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 5 cut(s) 129, 130, 317, 341, 912
Bse1I ACTGG 2 cut(s) 252, 370
Bse21I CCTNAGG 1 cut(s) 447
Bse8I GATNNNNATC 1 cut(s) 299
BseBI CCWGG 6 cut(s) 31, 68, 223, 336, 924, 1026
BseDI CCNNGG 8 cut(s) 30, 183, 221, 222, 335, 922, 929, 1011
BseGI GGATG 1 cut(s) 896
BseJI GATNNNNATC 1 cut(s) 299
BseLI CCNNNNNNNGG 5 cut(s) 129, 130, 317, 341, 912
BseMII CTCAG 2 cut(s) 438, 543
BseNI ACTGG 2 cut(s) 252, 370
BseXI GCAGC 4 cut(s) 121, 592, 664, 814
BsgI GTGCAG 1 cut(s) 813
Bsh1236I CGCG 1 cut(s) 427
BshFI GGCC 2 cut(s) 452, 927
BsiSI CCGG 3 cut(s) 18, 183, 630
BslFI GGGAC 4 cut(s) 200, 239, 353, 916
BslI CCNNNNNNNGG 5 cut(s) 129, 130, 317, 341, 912
BsmAI GTCTC 2 cut(s) 631, 854
BsmFI GGGAC 4 cut(s) 200, 239, 353, 916
BsmI GAATGC 2 cut(s) 482, 679
BsnI GGCC 2 cut(s) 452, 927
Bsp119I TTCGAA 1 cut(s) 486
Bsp1407I TGTACA 1 cut(s) 720
Bsp143I GATC 2 cut(s) 300, 788
Bsp19I CCATGG 1 cut(s) 929
BspACI CCGC 1 cut(s) 427
BspANI GGCC 2 cut(s) 452, 927
BspCNI CTCAG 2 cut(s) 439, 544
BspFNI CGCG 1 cut(s) 427
BspLI GGNNCC 3 cut(s) 36, 904, 905
BspMAI CTGCAG 1 cut(s) 682
BspQI GCTCTTC 1 cut(s) 708
BspT104I TTCGAA 1 cut(s) 486
BsrGI TGTACA 1 cut(s) 720
BsrI ACTGG 2 cut(s) 252, 370
BssECI CCNNGG 8 cut(s) 30, 183, 221, 222, 335, 922, 929, 1011
BssMI GATC 2 cut(s) 300, 788
BssNAI GTATAC 2 cut(s) 374, 868
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 2 cut(s) 929, 1011
Bst1107I GTATAC 2 cut(s) 374, 868
Bst2UI CCWGG 6 cut(s) 31, 68, 223, 336, 924, 1026
Bst4CI ACNGT 4 cut(s) 291, 344, 575, 865
Bst6I CTCTTC 2 cut(s) 60, 708
BstACI GRCGYC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 720
BstBI TTCGAA 1 cut(s) 486
BstC8I GCNNGC 2 cut(s) 82, 825
BstDEI CTNAG 3 cut(s) 447, 519, 552
BstDSI CCRYGG 1 cut(s) 929
BstF5I GGATG 1 cut(s) 896
BstFNI CGCG 1 cut(s) 427
BstKTI GATC 2 cut(s) 303, 791
BstMAI GTCTC 2 cut(s) 631, 854
BstMBI GATC 2 cut(s) 300, 788
BstMWI GCNNNNNNNGC 4 cut(s) 23, 176, 257, 924
BstNI CCWGG 6 cut(s) 31, 68, 223, 336, 924, 1026
BstSCI CCNGG 7 cut(s) 29, 66, 182, 221, 334, 922, 1024
BstSFI CTRYAG 1 cut(s) 678
BstUI CGCG 1 cut(s) 427
BstV1I GCAGC 4 cut(s) 121, 592, 664, 814
BstV2I GAAGAC 2 cut(s) 845, 931
BstX2I RGATCY 1 cut(s) 788
BstXI CCANNNNNNTGG 1 cut(s) 930
BstYI RGATCY 1 cut(s) 788
BstZ17I GTATAC 2 cut(s) 374, 868
Bsu36I CCTNAGG 1 cut(s) 447
BsuI GTATCC 1 cut(s) 654
BsuRI GGCC 2 cut(s) 452, 927
BtgI CCRYGG 1 cut(s) 929
BtsCI GGATG 1 cut(s) 896
Cac8I GCNNGC 2 cut(s) 82, 825
Cfr13I GGNCC 4 cut(s) 429, 571, 903, 926
CpoI CGGWCCG 1 cut(s) 571
CseI GACGC 2 cut(s) 23, 483
Csp6I GTAC 3 cut(s) 120, 332, 721
CspI CGGWCCG 1 cut(s) 571
CviAII CATG 1 cut(s) 930
CviQI GTAC 3 cut(s) 120, 332, 721
DdeI CTNAG 3 cut(s) 447, 519, 552
DpnI GATC 2 cut(s) 302, 790
DpnII GATC 2 cut(s) 300, 788
DraI TTTAAA 1 cut(s) 886
Eam1104I CTCTTC 2 cut(s) 60, 708
EarI CTCTTC 2 cut(s) 60, 708
Eco130I CCWWGG 2 cut(s) 929, 1011
Eco47I GGWCC 3 cut(s) 429, 571, 903
Eco57I CTGAAG 1 cut(s) 925
Eco81I CCTNAGG 1 cut(s) 447
EcoO109I RGGNCCY 1 cut(s) 903
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 6 cut(s) 29, 66, 221, 334, 922, 1024
EcoT14I CCWWGG 2 cut(s) 929, 1011
ErhI CCWWGG 2 cut(s) 929, 1011
FaeI CATG 1 cut(s) 933
FalI AAGNNNNNCTT 4 cut(s) 163, 195, 632, 664
FaqI GGGAC 4 cut(s) 200, 239, 353, 916
FatI CATG 1 cut(s) 929
FblI GTMKAC 2 cut(s) 373, 867
Fnu4HI GCNGC 4 cut(s) 135, 606, 678, 828
FokI GGATG 1 cut(s) 903
Fsp4HI GCNGC 4 cut(s) 135, 606, 678, 828
FspBI CTAG 1 cut(s) 1036
GluI GCNGC 4 cut(s) 135, 606, 678, 828
GsuI CTGGAG 3 cut(s) 13, 396, 918
HaeIII GGCC 2 cut(s) 452, 927
HapII CCGG 3 cut(s) 18, 183, 630
HgaI GACGC 2 cut(s) 23, 483
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 1 cut(s) 933
HinfI GANTC 1 cut(s) 326
HpaII CCGG 3 cut(s) 18, 183, 630
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 4 cut(s) 374, 739, 868, 1031
Hpy188I TCNGA 3 cut(s) 13, 516, 944
Hpy188III TCNNGA 6 cut(s) 150, 386, 413, 446, 747, 897
Hpy8I GTNNAC 4 cut(s) 374, 739, 868, 1031
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 6 cut(s) 60, 271, 341, 482, 508, 658
HpyCH4III ACNGT 4 cut(s) 291, 344, 575, 865
HpyCH4V TGCA 8 cut(s) 74, 84, 137, 470, 608, 680, 830, 973
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 176, 257, 924
HpyF3I CTNAG 3 cut(s) 447, 519, 552
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 1 cut(s) 933
KflI GGGWCCC 1 cut(s) 903
Kzo9I GATC 2 cut(s) 300, 788
LguI GCTCTTC 1 cut(s) 708
LmnI GCTCC 1 cut(s) 491
Lsp1109I GCAGC 4 cut(s) 121, 592, 664, 814
LweI GCATC 3 cut(s) 146, 881, 982
MaeI CTAG 1 cut(s) 1036
MaeIII GTNAC 2 cut(s) 395, 632
MalI GATC 2 cut(s) 302, 790
MboI GATC 2 cut(s) 300, 788
MboII GAAGA 8 cut(s) 47, 599, 643, 725, 802, 850, 931, 1013
MfeI CAATTG 1 cut(s) 266
MflI RGATCY 1 cut(s) 788
MluCI AATT 9 cut(s) 100, 112, 216, 266, 389, 464, 756, 880, 1017
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 2 cut(s) 36, 486
MnlI CCTC 7 cut(s) 37, 344, 389, 442, 529, 893, 945
MroXI GAANNNNTTC 2 cut(s) 938, 1020
MseI TTAA 4 cut(s) 404, 621, 693, 885
MspI CCGG 3 cut(s) 18, 183, 630
MspR9I CCNGG 7 cut(s) 31, 68, 184, 223, 336, 924, 1026
MunI CAATTG 1 cut(s) 266
Mva1269I GAATGC 2 cut(s) 482, 679
MvaI CCWGG 6 cut(s) 31, 68, 223, 336, 924, 1026
MvnI CGCG 1 cut(s) 427
MwoI GCNNNNNNNGC 4 cut(s) 23, 176, 257, 924
NciI CCSGG 1 cut(s) 184
NcoI CCATGG 1 cut(s) 929
NdeII GATC 2 cut(s) 300, 788
NlaIII CATG 1 cut(s) 933
NlaIV GGNNCC 3 cut(s) 36, 904, 905
NmuCI GTSAC 1 cut(s) 395
NspV TTCGAA 1 cut(s) 486
PasI CCCWGGG 1 cut(s) 222
PciSI GCTCTTC 1 cut(s) 708
PctI GAATGC 2 cut(s) 482, 679
PdmI GAANNNNTTC 2 cut(s) 938, 1020
PkrI GCNGC 4 cut(s) 136, 607, 679, 829
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
PpuMI RGGWCCY 1 cut(s) 903
Psp5II RGGWCCY 1 cut(s) 903
Psp6I CCWGG 6 cut(s) 29, 66, 221, 334, 922, 1024
PspGI CCWGG 6 cut(s) 29, 66, 221, 334, 922, 1024
PspN4I GGNNCC 3 cut(s) 36, 904, 905
PspPI GGNCC 4 cut(s) 429, 571, 903, 926
PspPPI RGGWCCY 1 cut(s) 903
PstI CTGCAG 1 cut(s) 682
PsuI RGATCY 1 cut(s) 788
RsaI GTAC 3 cut(s) 121, 333, 722
RsaNI GTAC 3 cut(s) 120, 332, 721
Rsr2I CGGWCCG 1 cut(s) 571
RsrII CGGWCCG 1 cut(s) 571
SapI GCTCTTC 1 cut(s) 708
SaqAI TTAA 4 cut(s) 404, 621, 693, 885
SatI GCNGC 4 cut(s) 135, 606, 678, 828
Sau3AI GATC 2 cut(s) 300, 788
Sau96I GGNCC 4 cut(s) 429, 571, 903, 926
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 7 cut(s) 31, 68, 184, 223, 336, 924, 1026
SetI ASST 9 cut(s) 72, 381, 720, 733, 756, 825, 917, 988, 1030
SfaNI GCATC 3 cut(s) 146, 881, 982
SfcI CTRYAG 1 cut(s) 678
SfuI TTCGAA 1 cut(s) 486
SinI GGWCC 3 cut(s) 429, 571, 903
SmlI CTYRAG 1 cut(s) 998
SmoI CTYRAG 1 cut(s) 998
Sse9I AATT 9 cut(s) 100, 112, 216, 266, 389, 464, 756, 880, 1017
SsiI CCGC 1 cut(s) 427
SspI AATATT 2 cut(s) 89, 438
SspMI CTAG 1 cut(s) 1036
StyD4I CCNGG 7 cut(s) 29, 66, 182, 221, 334, 922, 1024
StyI CCWWGG 2 cut(s) 929, 1011
TaaI ACNGT 4 cut(s) 291, 344, 575, 865
TaqI TCGA 4 cut(s) 303, 385, 486, 711
TaqII GACCGA 1 cut(s) 795
TasI AATT 9 cut(s) 100, 112, 216, 266, 389, 464, 756, 880, 1017
TatI WGTACW 1 cut(s) 720
Tru1I TTAA 4 cut(s) 404, 621, 693, 885
Tru9I TTAA 4 cut(s) 404, 621, 693, 885
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 4 cut(s) 134, 605, 677, 827
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 3 cut(s) 249, 471, 606
TspGWI ACGGA 3 cut(s) 27, 584, 783
VpaK11BI GGWCC 3 cut(s) 429, 571, 903
XapI RAATTY 5 cut(s) 100, 112, 389, 464, 1017
XmiI GTMKAC 2 cut(s) 373, 867
XmnI GAANNNNTTC 2 cut(s) 938, 1020
XspI CTAG 1 cut(s) 1036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.