Rw7G023540

Domain of unknown function (DUF1995)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000465
Physical Location & Seq
Forward (+)
28287286 .. 28312583
25298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G023540.1

Sequence Viewer

Length: 888 bp
ATGCCCATCTCTGACACCGGAACTACCTCCAGGGTTTCGTTTGCTATTCCTTCTCTTCCAAGTCACCAGGTTGCAACTGCCTGCAAATATTTGCCGTTGAATTCTTATGGGAATTTGAGTACCTCCAAATGGGCTGCATCTCATTTGTCAAGAAATCTCAAACTTGTGGCAAGTTCGGCTTCCGGGAATGACACTTCGGTTACCTTTGATGTGTCAATTCCTAGGGACTATGATGAACTCCTTGAACAAGAGATCGAGTTTCCTACTACTGGACTTGACTCTGTACCAGTCCACGAAACACATTTCAGGGACGGTGAAGGAGGAATAGAAATGACTGGAAGTATACAACTCATACGAGAATTTTGTGACATCTTAATATCTCCAGAGAAAGCCACACGGACCAGAATATTTTTTCCTGAGGCCAATGAAGTAGAATTTGCAAGGAAATCAGCATTCGAAGGAGCGTCCTTCAAGTTGGACTATGATTTTGGTTTTACTGAGAAAGTGAAAATGACGGACCGTGTGAAGCCAGAAGATGAAGTATTCTTGGCTGCATATCCATATTTTAATGTCTCCGAAATGCTTGTAGTCGAAGAGCTGTACAGAGAAGCTGTTGTGAACACTTCCAGAAAGCTAATTATTTTCAACGGAGAACTTGACCGAATAAGATCTGGGTATTATCCATCTTTCTTCTTCCCAAAGCTCGCTGCACTTTTGAAGACCCTGTTTCCAAGTATGGAGACTGTGTACTACATTCACAATTTTAAAGGACGCTCTGGAGGGACCCTCTTCAGAAAAGTGAGGAATAGATGCAATTGTTTGCATCAGCAGGAAGCTATGCCATCTCTCAAGGAAGTTGCCCTGGAAATTCTTCCAGGTAAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1995

Protein Analysis

295

Amino Acids

33.28

Weight (kDa)

5.78

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1995 PF09353 83 - 278 7.8e-20 Domain of unknown function (DUF1995)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48790 AT5G48790 AT5G48790
fragaria_vesca FvH4_5g23760 FvH4_5g23760 FvH4_5g23770 FvH4_5g23771 FvH4_5g23790 FvH4_5g23800 FvH4_7g03421 FvH4_7g07510
malus_domestica MD00G1000600.v1.1 MD06G1013900.v1.1
prunus_persica Prupe.2G101800_v2.0.a1 Prupe.5G022600_v2.0.a1 Prupe.5G022700_v2.0.a1
pyrus_communis pycom07g06280 pycom16g25400
rosa_chinensis RchiOBHm_Chr1g0337881 RchiOBHm_Chr1g0339341 RchiOBHm_Chr7g0213081 RchiOBHm_Chr7g0213111 RchiOBHm_Chr7g0213141 RchiOBHm_Chr7g0213151 RchiOBHm_Chr7g0213161 RchiOBHm_Chr7g0213181
rosa_laevigata RLG00000002825 RLG00000002828 RLG00000002829 RLG00000002832 RLG00000029226
rosa_multiflora Rmu_co8345885.1_g000002 Rmu_co8348513.1_g000001 Rmu_co8456259.1_g000001 Rmu_sc0000613.1_g000002 Rmu_sc0001121.1_g000005 Rmu_sc0001121.1_g000006 Rmu_sc0002989.1_g000003 Rmu_sc0015110.1_g000001 Rmu_sc0030208.1_g000001 Rmu_sc0030209.1_g000001 Rmu_sc0032877.1_g000001 Rmu_sc0039394.1_g000001 Rmu_ssc0000084.1_g000002 Rmu_ssc0000084.1_g000007 Rmu_ssc0000084.1_g000009 Rmu_ssc0000084.1_g000012
rosa_roxburghii Rroxscaffold_3G00246200 Rroxscaffold_3G00246210 Rroxscaffold_3G00246240 Rroxscaffold_3G00246250 Rroxscaffold_4G00313440
rosa_rugosa Rorug01G0142600.1 Rorug07G0139400 Rorug07G0139500 Rorug07G0139600 Rorug07G0139700.1 Rorug07G0139800 Rorug07G0140100
rosa_samantha Rh1AG159300 Rh1BG126400 Rh1CG148500 Rh7AG270700 Rh7AG270800 Rh7AG271200 Rh7AG271400 Rh7AG271500 Rh7BG266400 Rh7BG266600 Rh7BG267000 Rh7BG267100 Rh7BG267200 Rh7BG267400 Rh7CG290000 Rh7CG290100 Rh7CG290600 Rh7CG290700 Rh7CG290800 Rh7DG278900 Rh7DG279200 Rh7DG279300 Rh7DG279400 Rh7DG279500 Rh7DG279600
rosa_wichuraiana Rw1G013550 Rw7G023520 Rw7G023530 Rw7G023540 Rw7G023550 Rw7G023560 Rw7G023580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 343
AcsI RAATTY 5 cut(s) 100, 112, 359, 434, 867
AcuI CTGAAG 1 cut(s) 775
AfaI GTAC 4 cut(s) 121, 285, 602, 749
AfiI CCNNNNNNNGG 2 cut(s) 129, 269
AgsI TTSAA 5 cut(s) 100, 245, 472, 646, 718
AjnI CCWGG 4 cut(s) 29, 66, 861, 874
AluBI AGCT 5 cut(s) 598, 611, 634, 703, 836
AluI AGCT 5 cut(s) 598, 611, 634, 703, 836
Alw26I GTCTC 2 cut(s) 577, 734
AoxI GGCC 1 cut(s) 420
ApeKI GCWGC 3 cut(s) 134, 551, 707
ApoI RAATTY 5 cut(s) 100, 112, 359, 434, 867
ArsI GACNNNNNNTTYG 2 cut(s) 470, 502
Asp700I GAANNNNTTC 1 cut(s) 870
AspA2I CCTAGG 1 cut(s) 221
AspS9I GGNCC 3 cut(s) 399, 517, 783
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 2 cut(s) 56, 326
AsuII TTCGAA 1 cut(s) 456
AvaII GGWCC 3 cut(s) 399, 517, 783
AvrII CCTAGG 1 cut(s) 221
AxyI CCTNAGG 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 725
BbvI GCAGC 3 cut(s) 121, 538, 694
BccI CCATC 3 cut(s) 14, 691, 850
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 4 cut(s) 31, 68, 863, 876
BcnI CCSGG 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 577, 734
BfaI CTAG 2 cut(s) 222, 886
BglII AGATCT 1 cut(s) 668
BisI GCNGC 3 cut(s) 135, 552, 708
BlnI CCTAGG 1 cut(s) 221
BlsI GCNGC 3 cut(s) 136, 553, 709
Bme1390I CCNGG 5 cut(s) 31, 68, 184, 863, 876
Bme18I GGWCC 3 cut(s) 399, 517, 783
BmgT120I GGNCC 3 cut(s) 399, 517, 783
BmiI GGNNCC 2 cut(s) 784, 785
BmrFI CCNGG 5 cut(s) 31, 68, 184, 863, 876
BmsI GCATC 3 cut(s) 146, 800, 832
BpiI GAAGAC 1 cut(s) 725
BplI GAGNNNNNCTC 2 cut(s) 771, 803
BpmI CTGGAG 3 cut(s) 13, 366, 798
Bpu14I TTCGAA 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 833
BpuMI CCSGG 1 cut(s) 184
BsaJI CCNNGG 3 cut(s) 30, 221, 861
BsaWI WCCGGW 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 731, 761
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 269
Bse1I ACTGG 3 cut(s) 274, 287, 340
Bse21I CCTNAGG 1 cut(s) 417
BseBI CCWGG 4 cut(s) 31, 68, 863, 876
BseDI CCNNGG 3 cut(s) 30, 221, 861
BseLI CCNNNNNNNGG 2 cut(s) 129, 269
BseMII CTCAG 2 cut(s) 408, 489
BseNI ACTGG 3 cut(s) 274, 287, 340
BseXI GCAGC 3 cut(s) 121, 538, 694
BsgI GTGCAG 1 cut(s) 693
BshFI GGCC 1 cut(s) 422
BsiSI CCGG 2 cut(s) 18, 183
BslFI GGGAC 3 cut(s) 239, 323, 796
BslI CCNNNNNNNGG 2 cut(s) 129, 269
BsmAI GTCTC 2 cut(s) 577, 734
BsmFI GGGAC 3 cut(s) 239, 323, 796
BsmI GAATGC 1 cut(s) 452
BsnI GGCC 1 cut(s) 422
Bsp119I TTCGAA 1 cut(s) 456
Bsp1407I TGTACA 1 cut(s) 600
Bsp143I GATC 2 cut(s) 252, 668
BspANI GGCC 1 cut(s) 422
BspCNI CTCAG 2 cut(s) 409, 490
BspLI GGNNCC 2 cut(s) 784, 785
BspQI GCTCTTC 1 cut(s) 588
BspT104I TTCGAA 1 cut(s) 456
BsrGI TGTACA 1 cut(s) 600
BsrI ACTGG 3 cut(s) 274, 287, 340
BssECI CCNNGG 3 cut(s) 30, 221, 861
BssMI GATC 2 cut(s) 252, 668
BssNAI GTATAC 1 cut(s) 344
BssT1I CCWWGG 1 cut(s) 221
Bst1107I GTATAC 1 cut(s) 344
Bst2UI CCWGG 4 cut(s) 31, 68, 863, 876
Bst4CI ACNGT 3 cut(s) 314, 521, 745
Bst6I CTCTTC 3 cut(s) 60, 588, 794
BstAUI TGTACA 1 cut(s) 600
BstBI TTCGAA 1 cut(s) 456
BstC8I GCNNGC 2 cut(s) 82, 705
BstDEI CTNAG 2 cut(s) 417, 498
BstEII GGTNACC 1 cut(s) 199
BstKTI GATC 2 cut(s) 255, 671
BstMAI GTCTC 2 cut(s) 577, 734
BstMBI GATC 2 cut(s) 252, 668
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 4 cut(s) 31, 68, 863, 876
BstPI GGTNACC 1 cut(s) 199
BstSCI CCNGG 5 cut(s) 29, 66, 182, 861, 874
BstV1I GCAGC 3 cut(s) 121, 538, 694
BstV2I GAAGAC 1 cut(s) 725
BstX2I RGATCY 1 cut(s) 668
BstYI RGATCY 1 cut(s) 668
BstZ17I GTATAC 1 cut(s) 344
Bsu36I CCTNAGG 1 cut(s) 417
BsuRI GGCC 1 cut(s) 422
Cac8I GCNNGC 2 cut(s) 82, 705
Cfr13I GGNCC 3 cut(s) 399, 517, 783
CpoI CGGWCCG 1 cut(s) 517
CseI GACGC 2 cut(s) 453, 780
CsiI ACCWGGT 1 cut(s) 66
Csp6I GTAC 4 cut(s) 120, 284, 601, 748
CspI CGGWCCG 1 cut(s) 517
CviQI GTAC 4 cut(s) 120, 284, 601, 748
DdeI CTNAG 2 cut(s) 417, 498
DpnI GATC 2 cut(s) 254, 670
DpnII GATC 2 cut(s) 252, 668
DraI TTTAAA 1 cut(s) 766
Eam1104I CTCTTC 3 cut(s) 60, 588, 794
EarI CTCTTC 3 cut(s) 60, 588, 794
Eco130I CCWWGG 1 cut(s) 221
Eco47I GGWCC 3 cut(s) 399, 517, 783
Eco57I CTGAAG 1 cut(s) 775
Eco81I CCTNAGG 1 cut(s) 417
Eco91I GGTNACC 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 783
EcoO65I GGTNACC 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 4 cut(s) 29, 66, 861, 874
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaiI YATR 9 cut(s) 108, 231, 344, 353, 483, 556, 562, 737, 839
FalI AAGNNNNNCTT 2 cut(s) 163, 195
FaqI GGGAC 3 cut(s) 239, 323, 796
FblI GTMKAC 1 cut(s) 343
Fnu4HI GCNGC 3 cut(s) 135, 552, 708
Fsp4HI GCNGC 3 cut(s) 135, 552, 708
FspBI CTAG 2 cut(s) 222, 886
GluI GCNGC 3 cut(s) 135, 552, 708
GsuI CTGGAG 3 cut(s) 13, 366, 798
HaeIII GGCC 1 cut(s) 422
HapII CCGG 2 cut(s) 18, 183
HgaI GACGC 2 cut(s) 453, 780
HinfI GANTC 1 cut(s) 278
HpaII CCGG 2 cut(s) 18, 183
HphI GGTGA 2 cut(s) 56, 326
Hpy166II GTNNAC 5 cut(s) 292, 344, 619, 748, 881
Hpy188I TCNGA 3 cut(s) 13, 577, 794
Hpy188III TCNNGA 5 cut(s) 150, 383, 416, 627, 777
Hpy8I GTNNAC 5 cut(s) 292, 344, 619, 748, 881
HpyAV CCTTC 4 cut(s) 60, 311, 452, 478
HpyCH4III ACNGT 3 cut(s) 314, 521, 745
HpyCH4V TGCA 8 cut(s) 74, 84, 137, 440, 554, 710, 813, 823
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 2 cut(s) 417, 498
KflI GGGWCCC 1 cut(s) 783
Kzo9I GATC 2 cut(s) 252, 668
LguI GCTCTTC 1 cut(s) 588
LmnI GCTCC 1 cut(s) 461
Lsp1109I GCAGC 3 cut(s) 121, 538, 694
LweI GCATC 3 cut(s) 146, 800, 832
MabI ACCWGGT 1 cut(s) 66
MaeI CTAG 2 cut(s) 222, 886
MaeIII GTNAC 3 cut(s) 62, 199, 365
MalI GATC 2 cut(s) 254, 670
MboI GATC 2 cut(s) 252, 668
MboII GAAGA 8 cut(s) 47, 545, 605, 682, 685, 730, 781, 863
MfeI CAATTG 1 cut(s) 814
MflI RGATCY 1 cut(s) 668
MluCI AATT 9 cut(s) 100, 112, 216, 359, 434, 636, 760, 814, 867
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 456
MnlI CCTC 7 cut(s) 37, 133, 314, 412, 773, 795, 797
MroXI GAANNNNTTC 1 cut(s) 870
MseI TTAA 3 cut(s) 374, 567, 765
MspI CCGG 2 cut(s) 18, 183
MspR9I CCNGG 5 cut(s) 31, 68, 184, 863, 876
MunI CAATTG 1 cut(s) 814
Mva1269I GAATGC 1 cut(s) 452
MvaI CCWGG 4 cut(s) 31, 68, 863, 876
MwoI GCNNNNNNNGC 1 cut(s) 176
NciI CCSGG 1 cut(s) 184
NdeII GATC 2 cut(s) 252, 668
NlaIV GGNNCC 2 cut(s) 784, 785
NmuCI GTSAC 2 cut(s) 62, 365
NspV TTCGAA 1 cut(s) 456
PciSI GCTCTTC 1 cut(s) 588
PctI GAATGC 1 cut(s) 452
PdmI GAANNNNTTC 1 cut(s) 870
PfoI TCCNGGA 1 cut(s) 182
PkrI GCNGC 3 cut(s) 136, 553, 709
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PpuMI RGGWCCY 1 cut(s) 783
Psp5II RGGWCCY 1 cut(s) 783
Psp6I CCWGG 4 cut(s) 29, 66, 861, 874
PspEI GGTNACC 1 cut(s) 199
PspGI CCWGG 4 cut(s) 29, 66, 861, 874
PspN4I GGNNCC 2 cut(s) 784, 785
PspPI GGNCC 3 cut(s) 399, 517, 783
PspPPI RGGWCCY 1 cut(s) 783
PsuI RGATCY 1 cut(s) 668
RsaI GTAC 4 cut(s) 121, 285, 602, 749
RsaNI GTAC 4 cut(s) 120, 284, 601, 748
Rsr2I CGGWCCG 1 cut(s) 517
RsrII CGGWCCG 1 cut(s) 517
SapI GCTCTTC 1 cut(s) 588
SaqAI TTAA 3 cut(s) 374, 567, 765
SatI GCNGC 3 cut(s) 135, 552, 708
Sau3AI GATC 2 cut(s) 252, 668
Sau96I GGNCC 3 cut(s) 399, 517, 783
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 5 cut(s) 31, 68, 184, 863, 876
SexAI ACCWGGT 1 cut(s) 66
SfaNI GCATC 3 cut(s) 146, 800, 832
SfuI TTCGAA 1 cut(s) 456
SinI GGWCC 3 cut(s) 399, 517, 783
SmlI CTYRAG 1 cut(s) 848
SmoI CTYRAG 1 cut(s) 848
Sse9I AATT 9 cut(s) 100, 112, 216, 359, 434, 636, 760, 814, 867
SspI AATATT 2 cut(s) 89, 408
SspMI CTAG 2 cut(s) 222, 886
StyD4I CCNGG 5 cut(s) 29, 66, 182, 861, 874
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 3 cut(s) 314, 521, 745
TaqI TCGA 3 cut(s) 255, 456, 591
TaqII GACCGA 1 cut(s) 675
TasI AATT 9 cut(s) 100, 112, 216, 359, 434, 636, 760, 814, 867
TatI WGTACW 2 cut(s) 600, 747
Tru1I TTAA 3 cut(s) 374, 567, 765
Tru9I TTAA 3 cut(s) 374, 567, 765
TseFI GTSAC 2 cut(s) 62, 365
TseI GCWGC 3 cut(s) 134, 551, 707
Tsp45I GTSAC 2 cut(s) 62, 365
TspDTI ATGAA 3 cut(s) 249, 441, 552
TspGWI ACGGA 3 cut(s) 412, 530, 663
VpaK11BI GGWCC 3 cut(s) 399, 517, 783
XapI RAATTY 5 cut(s) 100, 112, 359, 434, 867
XmaJI CCTAGG 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 343
XmnI GAANNNNTTC 1 cut(s) 870
XspI CTAG 2 cut(s) 222, 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.