Rorug07G0139500

Domain of unknown function (DUF1995)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000465
Physical Location & Seq
Forward (+)
10997439 .. 10998719
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0139500.1

Sequence Viewer

Length: 1137 bp
ATGGCAACCATAATCACATTACTGCTATTGTTCTTCTTCCTTCCTCACATAGCAGCTACAACCTGCGGCGCATCAGCATGCTCTGCCAGCGGCCCGTCAGTTCGATTCCCATTCCGGCTAACTGATCGCCAGCAAACGGGTTGTGGGTATTCCGGTAAGTTTGGTGTATCGTGCAACGGACACAAACAAACCATTCTTAACCTCCCATCTTCCGGAAACTTCACGGTTGAGAGCATCAGTTACAAGGACCAACTCGTGTGGATCAACGACCTCGACAACTGCATCTTCAAGCGGTTTCTTGACAAGGACTTCAGTCTCATAGGTTCACCCTTCCGGTACGCCCTTGACCTTCAAGAGTACACCTTCTACAAATGTTCGCCCCAACTTGTGCCACTGTGGTCTCCCATCTCCTGTCTCAGCAGTGACAACTATGAGGTCATTGGCGTCGCGAGCTGGTCAACGTTATCGAGATCACCTTCTCCCTATTGTGATGTGATTACCAGAGCTTTGGTTCCAGCAGAAAGTTACGAGTTAGGGAATTCTGACTTTGGTGTGGGGCTGACTTGGAAGGAGCCTGATTGTCGTTCTTGTGAAGCGAGTGGTAAGGTTTGTGGGTTTCAGAATGGTTCACAGTCGAAAATTCACTGCTCTAGTACTCTATCTTATGGTCTCTCAAAAGCTACGAAGTATGGCATAGCGATTGGCGTATTAATTCCAGGGCTATTATCCATTACCTGTTGTGCACTTTATGTCTCAGCCCCGAGAAGGGATCATGGTCGAATCCAAGAATCTACCACCGAATTATCCGGTACTGTAACTAATTATCGTCAACCTCAAGTATTCATAGCAGGTCTTGATGGTCAGACAATTGAGTCATATCCCAAGACTCAACTCGGCGAGAGTTTGGAATTGCCTGACCCTAATGACAAAACTTGTCCAATATGTCTGGGTGAGTACCAACCGAAGGAAACTCTGAGGACTATACCAGAATGTAACCATTATTTCCATGCTAATTGCATTGACGAATGGCTTAGAAAAAATCCGACATGCCCGCTTTGTCGCAATCTACCCGGTCTTTGTCGAAATCCACTGGAGGTGTCATCAGTGAGACCACGTGATGATTATGCTATATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1995

Protein Analysis

378

Amino Acids

41.76

Weight (kDa)

6.32

Isoelectric Point (pI)

49.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 22 - 90 5.2e-15 Wall-associated receptor kinase galacturonan-binding
zf-rbx1 PF12678 309 - 354 1.1e-09 RING-H2 zinc finger domain
zf-RING_2 PF13639 311 - 354 1.2e-14 Ring finger domain
zf-C3HC4_2 PF13923 312 - 353 2.9e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 312 - 340 2.5e-09 RING-like zinc finger
zf-C3HC4 PF00097 312 - 353 1.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 312 - 351 6e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48790 AT5G48790 AT5G48790
fragaria_vesca FvH4_5g23760 FvH4_5g23760 FvH4_5g23770 FvH4_5g23771 FvH4_5g23790 FvH4_5g23800 FvH4_7g03421 FvH4_7g07510
malus_domestica MD00G1000600.v1.1 MD06G1013900.v1.1
prunus_persica Prupe.2G101800_v2.0.a1 Prupe.5G022600_v2.0.a1 Prupe.5G022700_v2.0.a1
pyrus_communis pycom07g06280 pycom16g25400
rosa_chinensis RchiOBHm_Chr1g0337881 RchiOBHm_Chr1g0339341 RchiOBHm_Chr7g0213081 RchiOBHm_Chr7g0213111 RchiOBHm_Chr7g0213141 RchiOBHm_Chr7g0213151 RchiOBHm_Chr7g0213161 RchiOBHm_Chr7g0213181
rosa_laevigata RLG00000002825 RLG00000002828 RLG00000002829 RLG00000002832 RLG00000029226
rosa_multiflora Rmu_co8345885.1_g000002 Rmu_co8348513.1_g000001 Rmu_co8456259.1_g000001 Rmu_sc0000613.1_g000002 Rmu_sc0001121.1_g000005 Rmu_sc0001121.1_g000006 Rmu_sc0002989.1_g000003 Rmu_sc0015110.1_g000001 Rmu_sc0030208.1_g000001 Rmu_sc0030209.1_g000001 Rmu_sc0032877.1_g000001 Rmu_sc0039394.1_g000001 Rmu_ssc0000084.1_g000002 Rmu_ssc0000084.1_g000007 Rmu_ssc0000084.1_g000009 Rmu_ssc0000084.1_g000012
rosa_roxburghii Rroxscaffold_3G00246200 Rroxscaffold_3G00246210 Rroxscaffold_3G00246240 Rroxscaffold_3G00246250 Rroxscaffold_4G00313440
rosa_rugosa Rorug01G0142600.1 Rorug07G0139400 Rorug07G0139500 Rorug07G0139600 Rorug07G0139700.1 Rorug07G0139800 Rorug07G0140100
rosa_samantha Rh1AG159300 Rh1BG126400 Rh1CG148500 Rh7AG270700 Rh7AG270800 Rh7AG271200 Rh7AG271400 Rh7AG271500 Rh7BG266400 Rh7BG266600 Rh7BG267000 Rh7BG267100 Rh7BG267200 Rh7BG267400 Rh7CG290000 Rh7CG290100 Rh7CG290600 Rh7CG290700 Rh7CG290800 Rh7DG278900 Rh7DG279200 Rh7DG279300 Rh7DG279400 Rh7DG279500 Rh7DG279600
rosa_wichuraiana Rw1G013550 Rw7G023520 Rw7G023530 Rw7G023540 Rw7G023550 Rw7G023560 Rw7G023580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 871
Acc36I ACCTGC 2 cut(s) 71, 839
AccII CGCG 1 cut(s) 449
AccIII TCCGGA 1 cut(s) 212
AciI CCGC 4 cut(s) 66, 90, 292, 1052
AclI AACGTT 1 cut(s) 461
AclWI GGATC 2 cut(s) 269, 777
AcsI RAATTY 2 cut(s) 538, 639
AcuI CTGAAG 1 cut(s) 295
AcvI CACGTG 1 cut(s) 1115
AcyI GRCGYC 1 cut(s) 444
AfaI GTAC 5 cut(s) 338, 359, 655, 811, 956
AfiI CCNNNNNNNGG 5 cut(s) 136, 212, 765, 766, 964
AgsI TTSAA 2 cut(s) 289, 353
AjnI CCWGG 1 cut(s) 715
AluBI AGCT 4 cut(s) 56, 453, 506, 680
AluI AGCT 4 cut(s) 56, 453, 506, 680
Alw21I GWGCWC 1 cut(s) 745
Alw26I GTCTC 6 cut(s) 320, 405, 419, 674, 757, 1102
Alw44I GTGCAC 1 cut(s) 741
AlwI GGATC 2 cut(s) 269, 777
Ama87I CYCGRG 1 cut(s) 760
Aor13HI TCCGGA 1 cut(s) 212
AoxI GGCC 1 cut(s) 91
ApaLI GTGCAC 1 cut(s) 741
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 2 cut(s) 538, 639
AseI ATTAAT 1 cut(s) 710
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 92, 247
AsuC2I CCSGG 1 cut(s) 1071
AsuHPI GGTGA 3 cut(s) 318, 465, 962
AvaI CYCGRG 1 cut(s) 760
AvaII GGWCC 1 cut(s) 247
BaeGI GKGCMC 1 cut(s) 745
BauI CACGAG 1 cut(s) 254
BbrPI CACGTG 1 cut(s) 1115
Bbv12I GWGCWC 1 cut(s) 745
BbvI GCAGC 1 cut(s) 65
BccI CCATC 3 cut(s) 214, 413, 851
BciT130I CCWGG 1 cut(s) 717
BcnI CCSGG 1 cut(s) 1071
BcoDI GTCTC 6 cut(s) 320, 405, 419, 674, 757, 1102
BfaI CTAG 1 cut(s) 651
BfuAI ACCTGC 2 cut(s) 71, 839
BisI GCNGC 3 cut(s) 54, 67, 91
BlsI GCNGC 3 cut(s) 55, 68, 92
BmcAI AGTACT 1 cut(s) 655
Bme1390I CCNGG 2 cut(s) 717, 1071
Bme18I GGWCC 1 cut(s) 247
BmeT110I CYCGRG 1 cut(s) 760
BmgT120I GGNCC 2 cut(s) 92, 247
BmiI GGNNCC 2 cut(s) 513, 573
BmrFI CCNGG 2 cut(s) 717, 1071
BmsI GCATC 3 cut(s) 80, 243, 291
BoxI GACNNNNGTC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 1112
BpuEI CTTGAG 1 cut(s) 819
BpuMI CCSGG 1 cut(s) 1071
BsaAI YACGTR 1 cut(s) 1115
BsaHI GRCGYC 1 cut(s) 444
BsaI GGTCTC 3 cut(s) 405, 674, 1102
BsaJI CCNNGG 1 cut(s) 716
BsaWI WCCGGW 4 cut(s) 152, 212, 333, 806
Bsc4I CCNNNNNNNGG 5 cut(s) 136, 212, 765, 766, 964
Bse1I ACTGG 1 cut(s) 1095
BseAI TCCGGA 1 cut(s) 212
BseBI CCWGG 1 cut(s) 717
BseDI CCNNGG 1 cut(s) 716
BseLI CCNNNNNNNGG 5 cut(s) 136, 212, 765, 766, 964
BseMII CTCAG 3 cut(s) 430, 768, 965
BseNI ACTGG 1 cut(s) 1095
BseSI GKGCMC 1 cut(s) 745
BseXI GCAGC 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 449
BshFI GGCC 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 745
BsiHKCI CYCGRG 1 cut(s) 760
BsiSI CCGG 6 cut(s) 115, 153, 213, 334, 807, 1071
BslI CCNNNNNNNGG 5 cut(s) 136, 212, 765, 766, 964
BsmAI GTCTC 6 cut(s) 320, 405, 419, 674, 757, 1102
BsnI GGCC 1 cut(s) 93
Bso31I GGTCTC 3 cut(s) 405, 674, 1102
BsoBI CYCGRG 1 cut(s) 760
Bsp1286I GDGCHC 1 cut(s) 745
Bsp13I TCCGGA 1 cut(s) 212
Bsp143I GATC 4 cut(s) 124, 261, 470, 769
Bsp68I TCGCGA 1 cut(s) 449
BspACI CCGC 4 cut(s) 66, 90, 292, 1052
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 3 cut(s) 429, 767, 966
BspEI TCCGGA 1 cut(s) 212
BspFNI CGCG 1 cut(s) 449
BspLI GGNNCC 2 cut(s) 513, 573
BspMI ACCTGC 2 cut(s) 71, 839
BspPI GGATC 2 cut(s) 269, 777
BspTNI GGTCTC 3 cut(s) 405, 674, 1102
BsrI ACTGG 1 cut(s) 1095
BssECI CCNNGG 1 cut(s) 716
BssMI GATC 4 cut(s) 124, 261, 470, 769
BssNI GRCGYC 1 cut(s) 444
BssSI CACGAG 1 cut(s) 254
Bst2BI CACGAG 1 cut(s) 254
Bst2UI CCWGG 1 cut(s) 717
Bst4CI ACNGT 4 cut(s) 226, 396, 633, 814
BstACI GRCGYC 1 cut(s) 444
BstAPI GCANNNNNTGC 1 cut(s) 83
BstBAI YACGTR 1 cut(s) 1115
BstC8I GCNNGC 5 cut(s) 79, 88, 131, 451, 1052
BstDEI CTNAG 4 cut(s) 416, 754, 974, 1031
BstFNI CGCG 1 cut(s) 449
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 4 cut(s) 127, 264, 473, 772
BstMAI GTCTC 6 cut(s) 320, 405, 419, 674, 757, 1102
BstMBI GATC 4 cut(s) 124, 261, 470, 769
BstMWI GCNNNNNNNGC 3 cut(s) 83, 87, 450
BstNI CCWGG 1 cut(s) 717
BstNSI RCATGY 2 cut(s) 81, 1050
BstPAI GACNNNNGTC 1 cut(s) 312
BstSCI CCNGG 2 cut(s) 715, 1069
BstSLI GKGCMC 1 cut(s) 745
BstUI CGCG 1 cut(s) 449
BstV1I GCAGC 1 cut(s) 65
BstXI CCANNNNNNTGG 1 cut(s) 508
BsuRI GGCC 1 cut(s) 93
BtsI GCAGTG 2 cut(s) 427, 643
BtsIMutI CAGTG 5 cut(s) 392, 427, 643, 1088, 1110
BtuMI TCGCGA 1 cut(s) 449
BveI ACCTGC 2 cut(s) 71, 839
Cac8I GCNNGC 5 cut(s) 79, 88, 131, 451, 1052
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 92, 247
CseI GACGC 1 cut(s) 433
Csp6I GTAC 5 cut(s) 337, 358, 654, 810, 955
CspCI CAANNNNNGTGG 2 cut(s) 239, 274
CviAII CATG 4 cut(s) 78, 773, 1007, 1047
CviQI GTAC 5 cut(s) 337, 358, 654, 810, 955
DdeI CTNAG 4 cut(s) 416, 754, 974, 1031
DpnI GATC 4 cut(s) 126, 263, 472, 771
DpnII GATC 4 cut(s) 124, 261, 470, 769
DrdI GACNNNNNNGTC 1 cut(s) 871
DseDI GACNNNNNNGTC 1 cut(s) 871
Eco31I GGTCTC 3 cut(s) 405, 674, 1102
Eco47I GGWCC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 295
Eco72I CACGTG 1 cut(s) 1115
Eco88I CYCGRG 1 cut(s) 760
EcoRI GAATTC 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 715
FaeI CATG 4 cut(s) 81, 776, 1010, 1050
FatI CATG 4 cut(s) 77, 772, 1006, 1046
FauI CCCGC 1 cut(s) 1059
Fnu4HI GCNGC 3 cut(s) 54, 67, 91
Fsp4HI GCNGC 3 cut(s) 54, 67, 91
FspBI CTAG 1 cut(s) 651
GlaI GCGC 1 cut(s) 70
GluI GCNGC 3 cut(s) 54, 67, 91
GsuI CTGGAG 1 cut(s) 1112
HaeIII GGCC 1 cut(s) 93
HapII CCGG 6 cut(s) 115, 153, 213, 334, 807, 1071
HgaI GACGC 1 cut(s) 433
HhaI GCGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 4 cut(s) 81, 776, 1010, 1050
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HincII GTYRAC 2 cut(s) 459, 830
HindII GTYRAC 2 cut(s) 459, 830
HinfI GANTC 5 cut(s) 105, 780, 788, 872, 886
HpaII CCGG 6 cut(s) 115, 153, 213, 334, 807, 1071
HphI GGTGA 3 cut(s) 318, 465, 962
Hpy166II GTNNAC 6 cut(s) 326, 360, 459, 629, 743, 830
Hpy188I TCNGA 5 cut(s) 544, 621, 864, 975, 1044
Hpy188III TCNNGA 6 cut(s) 213, 299, 353, 448, 468, 854
Hpy8I GTNNAC 6 cut(s) 326, 360, 459, 629, 743, 830
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 8 cut(s) 50, 340, 359, 373, 486, 562, 759, 958
HpyCH4III ACNGT 4 cut(s) 226, 396, 633, 814
HpyCH4IV ACGT 2 cut(s) 461, 1114
HpyCH4V TGCA 4 cut(s) 174, 282, 743, 1017
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 87, 450
HpyF3I CTNAG 4 cut(s) 416, 754, 974, 1031
HpySE526I ACGT 2 cut(s) 461, 1114
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 4 cut(s) 81, 776, 1010, 1050
HspAI GCGC 1 cut(s) 69
Kpn2I TCCGGA 1 cut(s) 212
Kzo9I GATC 4 cut(s) 124, 261, 470, 769
LmnI GCTCC 1 cut(s) 571
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 3 cut(s) 80, 243, 291
MaeI CTAG 1 cut(s) 651
MaeII ACGT 2 cut(s) 461, 1114
MaeIII GTNAC 5 cut(s) 239, 422, 524, 814, 992
MalI GATC 4 cut(s) 126, 263, 472, 771
MboI GATC 4 cut(s) 124, 261, 470, 769
MboII GAAGA 4 cut(s) 25, 28, 201, 277
MfeI CAATTG 1 cut(s) 867
MhlI GDGCHC 1 cut(s) 745
MluCI AATT 8 cut(s) 538, 639, 711, 800, 820, 867, 908, 1012
MlyI GAGTC 2 cut(s) 880, 881
MmeI TCCRAC 1 cut(s) 1067
MnlI CCTC 7 cut(s) 54, 212, 281, 427, 843, 969, 1087
MroI TCCGGA 1 cut(s) 212
MseI TTAA 3 cut(s) 198, 710, 1135
MslI CAYNNNNRTG 1 cut(s) 76
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 6 cut(s) 115, 153, 213, 334, 807, 1071
MspR9I CCNGG 2 cut(s) 717, 1071
MunI CAATTG 1 cut(s) 867
MvaI CCWGG 1 cut(s) 717
MvnI CGCG 1 cut(s) 449
MwoI GCNNNNNNNGC 3 cut(s) 83, 87, 450
NciI CCSGG 1 cut(s) 1071
NdeII GATC 4 cut(s) 124, 261, 470, 769
NlaIII CATG 4 cut(s) 81, 776, 1010, 1050
NlaIV GGNNCC 2 cut(s) 513, 573
NmeAIII GCCGAG 1 cut(s) 873
NmuCI GTSAC 1 cut(s) 422
NruI TCGCGA 1 cut(s) 449
NspI RCATGY 2 cut(s) 81, 1050
PaeI GCATGC 1 cut(s) 81
PfeI GAWTC 3 cut(s) 105, 780, 788
PkrI GCNGC 3 cut(s) 55, 68, 92
PleI GAGTC 2 cut(s) 880, 880
PmaCI CACGTG 1 cut(s) 1115
PmlI CACGTG 1 cut(s) 1115
PpsI GAGTC 2 cut(s) 880, 880
Ppu21I YACGTR 1 cut(s) 1115
PshAI GACNNNNGTC 1 cut(s) 312
PshBI ATTAAT 1 cut(s) 710
Psp1406I AACGTT 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 715
PspCI CACGTG 1 cut(s) 1115
PspGI CCWGG 1 cut(s) 715
PspN4I GGNNCC 2 cut(s) 513, 573
PspPI GGNCC 2 cut(s) 92, 247
RruI TCGCGA 1 cut(s) 449
RsaI GTAC 5 cut(s) 338, 359, 655, 811, 956
RsaNI GTAC 5 cut(s) 337, 358, 654, 810, 955
RseI CAYNNNNRTG 1 cut(s) 76
SaqAI TTAA 3 cut(s) 198, 710, 1135
SatI GCNGC 3 cut(s) 54, 67, 91
Sau3AI GATC 4 cut(s) 124, 261, 470, 769
Sau96I GGNCC 2 cut(s) 92, 247
ScaI AGTACT 1 cut(s) 655
SchI GAGTC 2 cut(s) 880, 881
ScrFI CCNGG 2 cut(s) 717, 1071
SduI GDGCHC 1 cut(s) 745
SfaNI GCATC 3 cut(s) 80, 243, 291
SinI GGWCC 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 76
SmlI CTYRAG 1 cut(s) 834
SmoI CTYRAG 1 cut(s) 834
SphI GCATGC 1 cut(s) 81
Sse9I AATT 8 cut(s) 538, 639, 711, 800, 820, 867, 908, 1012
SsiI CCGC 4 cut(s) 66, 90, 292, 1052
SspMI CTAG 1 cut(s) 651
StyD4I CCNGG 2 cut(s) 715, 1069
TaaI ACNGT 4 cut(s) 226, 396, 633, 814
TaiI ACGT 2 cut(s) 464, 1117
TaqI TCGA 6 cut(s) 103, 273, 467, 635, 778, 1081
TasI AATT 8 cut(s) 538, 639, 711, 800, 820, 867, 908, 1012
TatI WGTACW 2 cut(s) 357, 653
TauI GCSGC 2 cut(s) 69, 93
TfiI GAWTC 3 cut(s) 105, 780, 788
Tru1I TTAA 3 cut(s) 198, 710, 1135
Tru9I TTAA 3 cut(s) 198, 710, 1135
TscAI CASTG 5 cut(s) 399, 427, 650, 1095, 1110
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 1 cut(s) 832
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 5 cut(s) 399, 427, 650, 1095, 1110
VneI GTGCAC 1 cut(s) 741
VpaK11BI GGWCC 1 cut(s) 247
VspI ATTAAT 1 cut(s) 710
XapI RAATTY 2 cut(s) 538, 639
XceI RCATGY 2 cut(s) 81, 1050
XspI CTAG 1 cut(s) 651
ZrmI AGTACT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.