Rh7DG279300

Domain of unknown function (DUF1995)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000465
Physical Location & Seq
Forward (+)
30138691 .. 30177836
39146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG279300.1

Sequence Viewer

Length: 696 bp
ATGCCCATCTCCGACACTGGAACTGCCTCCAGGGTTCCGTTTGCTATTCCTTCTCTTCCAAGTCGCCAGGTTGCAACTGCCTGCAAATATTTGCCGTTGAATTCTTATGGGAATTTGAGTACCCCCAAATGGGCTGCATCTCATTTGTCAAGAAATCTCAAACTTGTGGCAAGTTCGGCTTCCGGGAACGACACTTTGGTTGCCTTTGATGTGTCAACTCCTAGGGACTATGATGAACTCCTTGAACAAGCCAGTAAAGCAACTCAATTGGCTTTGAAGGATAACAAACAGTTGATGGAGATCGAGTTTCCTACTGCTGGACTTGACTCTGTATCAGGGGACGGTGAAGGAGGAATAGAAATGACTGGAAGTATACAGCTCATTCGAGAATTTTGTGGCATCTTAATATCTCCAGAGAAAGCCACGCGGACCAAAATATTTTTTCCTGAGGCCAATGAAGTAGAATTTGCAAGGAAATCAGCATTCGAAGGAGCGTCCTTCAAGTTGGACTATCTGACTAAGCCATCGTTTTTTGAGGATTTTGGTTTTACTGAGAAAGTGAAAATGACCGACCGTGTGAAGCCAGAAGATGAACTATTCTTGGCTGCATATCCATATTTTAATGTCTCCGGTAACTCCAAGTATCCCTTCTTATCATTGTTAGGAAAAGTTGAATGCTGCAGAAACACATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1995

Protein Analysis

231

Amino Acids

25.45

Weight (kDa)

5.23

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1995 PF09353 74 - 208 1.6e-14 Domain of unknown function (DUF1995)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48790 AT5G48790 AT5G48790
fragaria_vesca FvH4_5g23760 FvH4_5g23760 FvH4_5g23770 FvH4_5g23771 FvH4_5g23790 FvH4_5g23800 FvH4_7g03421 FvH4_7g07510
malus_domestica MD00G1000600.v1.1 MD06G1013900.v1.1
prunus_persica Prupe.2G101800_v2.0.a1 Prupe.5G022600_v2.0.a1 Prupe.5G022700_v2.0.a1
pyrus_communis pycom07g06280 pycom16g25400
rosa_chinensis RchiOBHm_Chr1g0337881 RchiOBHm_Chr1g0339341 RchiOBHm_Chr7g0213081 RchiOBHm_Chr7g0213111 RchiOBHm_Chr7g0213141 RchiOBHm_Chr7g0213151 RchiOBHm_Chr7g0213161 RchiOBHm_Chr7g0213181
rosa_laevigata RLG00000002825 RLG00000002828 RLG00000002829 RLG00000002832 RLG00000029226
rosa_multiflora Rmu_co8345885.1_g000002 Rmu_co8348513.1_g000001 Rmu_co8456259.1_g000001 Rmu_sc0000613.1_g000002 Rmu_sc0001121.1_g000005 Rmu_sc0001121.1_g000006 Rmu_sc0002989.1_g000003 Rmu_sc0015110.1_g000001 Rmu_sc0030208.1_g000001 Rmu_sc0030209.1_g000001 Rmu_sc0032877.1_g000001 Rmu_sc0039394.1_g000001 Rmu_ssc0000084.1_g000002 Rmu_ssc0000084.1_g000007 Rmu_ssc0000084.1_g000009 Rmu_ssc0000084.1_g000012
rosa_roxburghii Rroxscaffold_3G00246200 Rroxscaffold_3G00246210 Rroxscaffold_3G00246240 Rroxscaffold_3G00246250 Rroxscaffold_4G00313440
rosa_rugosa Rorug01G0142600.1 Rorug07G0139400 Rorug07G0139500 Rorug07G0139600 Rorug07G0139700.1 Rorug07G0139800 Rorug07G0140100
rosa_samantha Rh1AG159300 Rh1BG126400 Rh1CG148500 Rh7AG270700 Rh7AG270800 Rh7AG271200 Rh7AG271400 Rh7AG271500 Rh7BG266400 Rh7BG266600 Rh7BG267000 Rh7BG267100 Rh7BG267200 Rh7BG267400 Rh7CG290000 Rh7CG290100 Rh7CG290600 Rh7CG290700 Rh7CG290800 Rh7DG278900 Rh7DG279200 Rh7DG279300 Rh7DG279400 Rh7DG279500 Rh7DG279600
rosa_wichuraiana Rw1G013550 Rw7G023520 Rw7G023530 Rw7G023540 Rw7G023550 Rw7G023560 Rw7G023580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 373
AccII CGCG 1 cut(s) 427
AciI CCGC 1 cut(s) 427
AcsI RAATTY 4 cut(s) 100, 112, 389, 464
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 3 cut(s) 129, 130, 317
AgsI TTSAA 5 cut(s) 100, 245, 277, 502, 674
AjnI CCWGG 2 cut(s) 29, 66
AjuI GAANNNNNNNTTGG 4 cut(s) 179, 211, 632, 664
AluBI AGCT 1 cut(s) 379
AluI AGCT 1 cut(s) 379
Alw26I GTCTC 1 cut(s) 631
AoxI GGCC 1 cut(s) 450
ApeKI GCWGC 3 cut(s) 134, 605, 678
ApoI RAATTY 4 cut(s) 100, 112, 389, 464
AspA2I CCTAGG 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 429
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 356
AsuII TTCGAA 1 cut(s) 486
AvaII GGWCC 1 cut(s) 429
AvrII CCTAGG 1 cut(s) 221
AxyI CCTNAGG 1 cut(s) 447
BbvI GCAGC 3 cut(s) 121, 592, 665
BccI CCATC 3 cut(s) 14, 289, 532
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 2 cut(s) 31, 68
BciVI GTATCC 1 cut(s) 654
BcnI CCSGG 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 631
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 679
BfuI GTATCC 1 cut(s) 654
BisI GCNGC 3 cut(s) 135, 606, 679
BlnI CCTAGG 1 cut(s) 221
BlsI GCNGC 3 cut(s) 136, 607, 680
Bme1390I CCNGG 3 cut(s) 31, 68, 184
Bme18I GGWCC 1 cut(s) 429
BmgT120I GGNCC 1 cut(s) 429
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 3 cut(s) 31, 68, 184
BmsI GCATC 2 cut(s) 146, 408
BpmI CTGGAG 2 cut(s) 13, 396
Bpu14I TTCGAA 1 cut(s) 486
BpuMI CCSGG 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 299
BsaJI CCNNGG 2 cut(s) 30, 221
BsaWI WCCGGW 1 cut(s) 629
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 130, 317
Bse1I ACTGG 3 cut(s) 22, 252, 370
Bse21I CCTNAGG 1 cut(s) 447
Bse8I GATNNNNATC 1 cut(s) 299
BseBI CCWGG 2 cut(s) 31, 68
BseDI CCNNGG 2 cut(s) 30, 221
BseJI GATNNNNATC 1 cut(s) 299
BseLI CCNNNNNNNGG 3 cut(s) 129, 130, 317
BseMII CTCAG 2 cut(s) 438, 543
BseNI ACTGG 3 cut(s) 22, 252, 370
BseXI GCAGC 3 cut(s) 121, 592, 665
Bsh1236I CGCG 1 cut(s) 427
Bsh1285I CGRYCG 1 cut(s) 574
BshFI GGCC 1 cut(s) 452
BsiEI CGRYCG 1 cut(s) 574
BsiSI CCGG 2 cut(s) 183, 630
BslFI GGGAC 2 cut(s) 239, 353
BslI CCNNNNNNNGG 3 cut(s) 129, 130, 317
BsmAI GTCTC 1 cut(s) 631
BsmFI GGGAC 2 cut(s) 239, 353
BsmI GAATGC 2 cut(s) 482, 680
BsnI GGCC 1 cut(s) 452
Bsp119I TTCGAA 1 cut(s) 486
Bsp143I GATC 1 cut(s) 300
BspACI CCGC 1 cut(s) 427
BspANI GGCC 1 cut(s) 452
BspCNI CTCAG 2 cut(s) 439, 544
BspFNI CGCG 1 cut(s) 427
BspLI GGNNCC 1 cut(s) 36
BspMAI CTGCAG 1 cut(s) 683
BspT104I TTCGAA 1 cut(s) 486
BsrI ACTGG 3 cut(s) 22, 252, 370
BssECI CCNNGG 2 cut(s) 30, 221
BssMI GATC 1 cut(s) 300
BssNAI GTATAC 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 221
Bst1107I GTATAC 1 cut(s) 374
Bst2UI CCWGG 2 cut(s) 31, 68
Bst4CI ACNGT 3 cut(s) 291, 344, 575
Bst6I CTCTTC 1 cut(s) 60
BstBI TTCGAA 1 cut(s) 486
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 3 cut(s) 447, 519, 552
BstFNI CGCG 1 cut(s) 427
BstKTI GATC 1 cut(s) 303
BstMAI GTCTC 1 cut(s) 631
BstMBI GATC 1 cut(s) 300
BstMCI CGRYCG 1 cut(s) 574
BstMWI GCNNNNNNNGC 2 cut(s) 176, 257
BstNI CCWGG 2 cut(s) 31, 68
BstSCI CCNGG 3 cut(s) 29, 66, 182
BstSFI CTRYAG 1 cut(s) 679
BstUI CGCG 1 cut(s) 427
BstV1I GCAGC 3 cut(s) 121, 592, 665
BstZ17I GTATAC 1 cut(s) 374
Bsu36I CCTNAGG 1 cut(s) 447
BsuI GTATCC 1 cut(s) 654
BsuRI GGCC 1 cut(s) 452
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 429
CseI GACGC 1 cut(s) 483
Csp6I GTAC 1 cut(s) 120
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 3 cut(s) 447, 519, 552
DpnI GATC 1 cut(s) 302
DpnII GATC 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 429
Eco81I CCTNAGG 1 cut(s) 447
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 2 cut(s) 29, 66
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaiI YATR 6 cut(s) 108, 231, 374, 610, 616, 691
FalI AAGNNNNNCTT 4 cut(s) 163, 195, 632, 664
FaqI GGGAC 2 cut(s) 239, 353
FblI GTMKAC 1 cut(s) 373
Fnu4HI GCNGC 3 cut(s) 135, 606, 679
Fsp4HI GCNGC 3 cut(s) 135, 606, 679
FspBI CTAG 1 cut(s) 222
GluI GCNGC 3 cut(s) 135, 606, 679
GsuI CTGGAG 2 cut(s) 13, 396
HaeIII GGCC 1 cut(s) 452
HapII CCGG 2 cut(s) 183, 630
HgaI GACGC 1 cut(s) 483
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HinfI GANTC 1 cut(s) 326
HpaII CCGG 2 cut(s) 183, 630
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 216, 374
Hpy188I TCNGA 2 cut(s) 13, 516
Hpy188III TCNNGA 4 cut(s) 150, 386, 413, 446
Hpy8I GTNNAC 2 cut(s) 216, 374
HpyAV CCTTC 6 cut(s) 60, 271, 341, 482, 508, 658
HpyCH4III ACNGT 3 cut(s) 291, 344, 575
HpyCH4V TGCA 6 cut(s) 74, 84, 137, 470, 608, 681
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 257
HpyF3I CTNAG 3 cut(s) 447, 519, 552
Kzo9I GATC 1 cut(s) 300
LmnI GCTCC 1 cut(s) 491
Lsp1109I GCAGC 3 cut(s) 121, 592, 665
LweI GCATC 2 cut(s) 146, 408
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 632
MalI GATC 1 cut(s) 302
MboI GATC 1 cut(s) 300
MboII GAAGA 2 cut(s) 47, 599
MfeI CAATTG 1 cut(s) 266
MluCI AATT 5 cut(s) 100, 112, 266, 389, 464
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 2 cut(s) 36, 486
MnlI CCTC 4 cut(s) 37, 344, 442, 529
MseI TTAA 3 cut(s) 404, 621, 694
MspI CCGG 2 cut(s) 183, 630
MspR9I CCNGG 3 cut(s) 31, 68, 184
MunI CAATTG 1 cut(s) 266
Mva1269I GAATGC 2 cut(s) 482, 680
MvaI CCWGG 2 cut(s) 31, 68
MvnI CGCG 1 cut(s) 427
MwoI GCNNNNNNNGC 2 cut(s) 176, 257
NciI CCSGG 1 cut(s) 184
NdeII GATC 1 cut(s) 300
NlaIV GGNNCC 1 cut(s) 36
NspV TTCGAA 1 cut(s) 486
PctI GAATGC 2 cut(s) 482, 680
PfoI TCCNGGA 1 cut(s) 182
PkrI GCNGC 3 cut(s) 136, 607, 680
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
Psp6I CCWGG 2 cut(s) 29, 66
PspGI CCWGG 2 cut(s) 29, 66
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 429
PstI CTGCAG 1 cut(s) 683
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SaqAI TTAA 3 cut(s) 404, 621, 694
SatI GCNGC 3 cut(s) 135, 606, 679
Sau3AI GATC 1 cut(s) 300
Sau96I GGNCC 1 cut(s) 429
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 3 cut(s) 31, 68, 184
SetI ASST 2 cut(s) 72, 381
SfaNI GCATC 2 cut(s) 146, 408
SfcI CTRYAG 1 cut(s) 679
SfuI TTCGAA 1 cut(s) 486
SinI GGWCC 1 cut(s) 429
Sse9I AATT 5 cut(s) 100, 112, 266, 389, 464
SsiI CCGC 1 cut(s) 427
SspI AATATT 2 cut(s) 89, 438
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 3 cut(s) 29, 66, 182
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 3 cut(s) 291, 344, 575
TaqI TCGA 3 cut(s) 303, 385, 486
TaqII GACCGA 1 cut(s) 584
TasI AATT 5 cut(s) 100, 112, 266, 389, 464
Tru1I TTAA 3 cut(s) 404, 621, 694
Tru9I TTAA 3 cut(s) 404, 621, 694
TscAI CASTG 1 cut(s) 22
TseI GCWGC 3 cut(s) 134, 605, 678
TspDTI ATGAA 3 cut(s) 249, 471, 606
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 1 cut(s) 22
VpaK11BI GGWCC 1 cut(s) 429
XapI RAATTY 4 cut(s) 100, 112, 389, 464
XmaJI CCTAGG 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 373
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.