FvH4_7g03421

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000465
Physical Location & Seq
Forward (+)
3738043 .. 3742538
4496 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03421.t1

Sequence Viewer

Length: 306 bp
ATGGAGTTTACAGAGGAGGATGCGATCGGAGCCGTTGGTGGTGGTGATTATAAAATGGGGCTATTTCAAATTTCTGGCTCCACCAACTGCCAATACCTGCTCGTCAAAATCGTTGAGATTTCTAGAGCACCACCACCTTCTGATTCGTTGTCTCCGCCTCAGAATCTGAGTTTCCAGCCGAGTGAACTCAGGTCAAGCTTGAAGCTGGTGGGGTATTTTGGGAATGGTGAGAAGAATCGGAAGGACCTTCGAAACGACGCCGTTATAGGTCGGCGACTGCATAATCGGAGGGTTGCTCCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.12

Weight (kDa)

8.89

Isoelectric Point (pI)

63.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48790 AT5G48790 AT5G48790
fragaria_vesca FvH4_5g23760 FvH4_5g23760 FvH4_5g23770 FvH4_5g23771 FvH4_5g23790 FvH4_5g23800 FvH4_7g03421 FvH4_7g07510
malus_domestica MD00G1000600.v1.1 MD06G1013900.v1.1
prunus_persica Prupe.2G101800_v2.0.a1 Prupe.5G022600_v2.0.a1 Prupe.5G022700_v2.0.a1
pyrus_communis pycom07g06280 pycom16g25400
rosa_chinensis RchiOBHm_Chr1g0337881 RchiOBHm_Chr1g0339341 RchiOBHm_Chr7g0213081 RchiOBHm_Chr7g0213111 RchiOBHm_Chr7g0213141 RchiOBHm_Chr7g0213151 RchiOBHm_Chr7g0213161 RchiOBHm_Chr7g0213181
rosa_laevigata RLG00000002825 RLG00000002828 RLG00000002829 RLG00000002832 RLG00000029226
rosa_multiflora Rmu_co8345885.1_g000002 Rmu_co8348513.1_g000001 Rmu_co8456259.1_g000001 Rmu_sc0000613.1_g000002 Rmu_sc0001121.1_g000005 Rmu_sc0001121.1_g000006 Rmu_sc0002989.1_g000003 Rmu_sc0015110.1_g000001 Rmu_sc0030208.1_g000001 Rmu_sc0030209.1_g000001 Rmu_sc0032877.1_g000001 Rmu_sc0039394.1_g000001 Rmu_ssc0000084.1_g000002 Rmu_ssc0000084.1_g000007 Rmu_ssc0000084.1_g000009 Rmu_ssc0000084.1_g000012
rosa_roxburghii Rroxscaffold_3G00246200 Rroxscaffold_3G00246210 Rroxscaffold_3G00246240 Rroxscaffold_3G00246250 Rroxscaffold_4G00313440
rosa_rugosa Rorug01G0142600.1 Rorug07G0139400 Rorug07G0139500 Rorug07G0139600 Rorug07G0139700.1 Rorug07G0139800 Rorug07G0140100
rosa_samantha Rh1AG159300 Rh1BG126400 Rh1CG148500 Rh7AG270700 Rh7AG270800 Rh7AG271200 Rh7AG271400 Rh7AG271500 Rh7BG266400 Rh7BG266600 Rh7BG267000 Rh7BG267100 Rh7BG267200 Rh7BG267400 Rh7CG290000 Rh7CG290100 Rh7CG290600 Rh7CG290700 Rh7CG290800 Rh7DG278900 Rh7DG279200 Rh7DG279300 Rh7DG279400 Rh7DG279500 Rh7DG279600
rosa_wichuraiana Rw1G013550 Rw7G023520 Rw7G023530 Rw7G023540 Rw7G023550 Rw7G023560 Rw7G023580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 105
AciI CCGC 1 cut(s) 155
AcsI RAATTY 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 258
AgsI TTSAA 2 cut(s) 68, 202
AluBI AGCT 2 cut(s) 198, 205
AluI AGCT 2 cut(s) 198, 205
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 156
AlwNI CAGNNNCTG 1 cut(s) 166
ApoI RAATTY 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 2 cut(s) 56, 239
AsuII TTCGAA 1 cut(s) 250
AvaII GGWCC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 130
BceAI ACGGC 2 cut(s) 17, 245
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 2 cut(s) 31, 79
BmsI GCATC 1 cut(s) 10
BplI GAGNNNNNCTC 1 cut(s) 280
Bpu14I TTCGAA 1 cut(s) 250
BsaHI GRCGYC 1 cut(s) 258
BseGI GGATG 1 cut(s) 25
BseMII CTCAG 3 cut(s) 158, 173, 202
BseRI GAGGAG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 27
BsiEI CGRYCG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 156
Bsp119I TTCGAA 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 1 cut(s) 155
BspCNI CTCAG 3 cut(s) 159, 172, 201
BspLI GGNNCC 2 cut(s) 31, 79
BspMI ACCTGC 1 cut(s) 105
BspT104I TTCGAA 1 cut(s) 250
BssMI GATC 1 cut(s) 24
BssNI GRCGYC 1 cut(s) 258
BstACI GRCGYC 1 cut(s) 258
BstBI TTCGAA 1 cut(s) 250
BstDEI CTNAG 3 cut(s) 159, 167, 188
BstF5I GGATG 1 cut(s) 25
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 1 cut(s) 24
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 29
BtsCI GGATG 1 cut(s) 25
BveI ACCTGC 1 cut(s) 105
CaiI CAGNNNCTG 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 244
CseI GACGC 1 cut(s) 266
CviJI RGCY 6 cut(s) 32, 61, 78, 178, 198, 205
CviKI_1 RGCY 6 cut(s) 32, 61, 78, 178, 198, 205
DdeI CTNAG 3 cut(s) 159, 167, 188
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
EciI GGCGGA 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 244
FaiI YATR 3 cut(s) 51, 266, 282
FokI GGATG 1 cut(s) 32
FspBI CTAG 1 cut(s) 123
HgaI GACGC 1 cut(s) 266
Hin1I GRCGYC 1 cut(s) 258
HindIII AAGCTT 1 cut(s) 196
HinfI GANTC 3 cut(s) 143, 163, 235
HphI GGTGA 2 cut(s) 56, 239
Hpy166II GTNNAC 2 cut(s) 9, 185
Hpy188I TCNGA 6 cut(s) 29, 142, 162, 168, 240, 288
Hpy188III TCNNGA 1 cut(s) 123
Hpy8I GTNNAC 2 cut(s) 9, 185
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 3 cut(s) 147, 235, 257
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 3 cut(s) 159, 167, 188
Hsp92I GRCGYC 1 cut(s) 258
Kzo9I GATC 1 cut(s) 24
LmnI GCTCC 3 cut(s) 29, 83, 301
LpnPI CCDG 5 cut(s) 60, 110, 175, 188, 191
LweI GCATC 1 cut(s) 10
MaeI CTAG 1 cut(s) 123
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 2 cut(s) 69, 301
MnlI CCTC 4 cut(s) 7, 10, 168, 282
MseI TTAA 1 cut(s) 304
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 1 cut(s) 24
NlaIV GGNNCC 2 cut(s) 31, 79
NmeAIII GCCGAG 1 cut(s) 204
NspV TTCGAA 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PfeI GAWTC 3 cut(s) 143, 163, 235
Ple19I CGATCG 1 cut(s) 27
PpuMI RGGWCCY 1 cut(s) 244
PsiI TTATAA 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 31, 79
PspPI GGNCC 1 cut(s) 244
PspPPI RGGWCCY 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 166
PvuI CGATCG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 304
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 1 cut(s) 244
SduI GDGCHC 1 cut(s) 130
SetI ASST 7 cut(s) 99, 139, 194, 200, 207, 249, 271
SfaNI GCATC 1 cut(s) 10
SfuI TTCGAA 1 cut(s) 250
SinI GGWCC 1 cut(s) 244
Sse9I AATT 2 cut(s) 69, 301
SsiI CCGC 1 cut(s) 155
SspMI CTAG 1 cut(s) 123
TaqI TCGA 1 cut(s) 250
TasI AATT 2 cut(s) 69, 301
TfiI GAWTC 3 cut(s) 143, 163, 235
Tru1I TTAA 1 cut(s) 304
Tru9I TTAA 1 cut(s) 304
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 1 cut(s) 69
XbaI TCTAGA 1 cut(s) 122
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.