MD06G1013900.v1.1

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000465
Physical Location & Seq
Forward (+)
1745452 .. 1746342
891 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1013900.v1.1.491

Sequence Viewer

Length: 891 bp
ATGGCGAATGAGATATGGATCGTTCCATTTTTTGGGCAGGGACATCTCTTCCCGCTAGTGGAGCTCTGCAAACAAATAGCCTCCCGAGACTTCAAATCCGTTTTCGTTATTTCTTCCAACTTCTCCTCTTCCATCCCCTCTTCCCTCCGCCAGCACCCGCTTGTCCAAATCGCCGAAATCCCCGAATCGAGCCCATCGTCTGATCCATCAACGCCGCCTCAGCCAACTCCTCAGCCACTCCACCGCCACCACGATCAGGACAACCAGATAGCTAACGGTCTTGAGAAACTCCTTTCGACCCGATGCCAGAGTTCGGATTCTGCGCTGCCCGTATGTGCCGTGCTTGACGTCATGATGGGCTGGACTGCCGAAGTTTTTAAGAAATTTGAAATTCCAACCGTAGCTTTCTTCACCTCTGGTGCTTGCTCTGCCGCCATGGAGTATGCCATGTGGAAGGCTCGGCCCTTGGATATCAAATCCGACGAGACCCGTTTGCTCCCCGGGTTACCCGAGGAAATGGCTCTCACTCTATCTGATGTTAAACGACAGTCTCGCGGACCACCGCCACACGGTCATGGTGGCGGCCCACCAACAGGGCCAGGCACAGGTTTTCCTCCGCCACCCGGTCATGGTGGCGGCTCACAAACAGGGCCAGGAGCAGGTTTTCCTCCGCCACCGAGCCAAGGTGTAGGTGGCTTTCCTCCATTTGGCCCAAATGCAGGTATGCCTCTGCCGGGCCAAGATGCAGTTGGTTTTCCTCCATTTGGATCGGGGCACGGTATGCCTCCACCCGACCCGCCTCTTAATGGACCTGGCCCGGGAAGAAGGGGCCATCCGCAGCCAGGAGGTAAACCCCGTGGACAGAAGATGCTGACCGATCTATTGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

297

Amino Acids

31.15

Weight (kDa)

6.79

Isoelectric Point (pI)

60.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48790 AT5G48790 AT5G48790
fragaria_vesca FvH4_5g23760 FvH4_5g23760 FvH4_5g23770 FvH4_5g23771 FvH4_5g23790 FvH4_5g23800 FvH4_7g03421 FvH4_7g07510
malus_domestica MD00G1000600.v1.1 MD06G1013900.v1.1
prunus_persica Prupe.2G101800_v2.0.a1 Prupe.5G022600_v2.0.a1 Prupe.5G022700_v2.0.a1
pyrus_communis pycom07g06280 pycom16g25400
rosa_chinensis RchiOBHm_Chr1g0337881 RchiOBHm_Chr1g0339341 RchiOBHm_Chr7g0213081 RchiOBHm_Chr7g0213111 RchiOBHm_Chr7g0213141 RchiOBHm_Chr7g0213151 RchiOBHm_Chr7g0213161 RchiOBHm_Chr7g0213181
rosa_laevigata RLG00000002825 RLG00000002828 RLG00000002829 RLG00000002832 RLG00000029226
rosa_multiflora Rmu_co8345885.1_g000002 Rmu_co8348513.1_g000001 Rmu_co8456259.1_g000001 Rmu_sc0000613.1_g000002 Rmu_sc0001121.1_g000005 Rmu_sc0001121.1_g000006 Rmu_sc0002989.1_g000003 Rmu_sc0015110.1_g000001 Rmu_sc0030208.1_g000001 Rmu_sc0030209.1_g000001 Rmu_sc0032877.1_g000001 Rmu_sc0039394.1_g000001 Rmu_ssc0000084.1_g000002 Rmu_ssc0000084.1_g000007 Rmu_ssc0000084.1_g000009 Rmu_ssc0000084.1_g000012
rosa_roxburghii Rroxscaffold_3G00246200 Rroxscaffold_3G00246210 Rroxscaffold_3G00246240 Rroxscaffold_3G00246250 Rroxscaffold_4G00313440
rosa_rugosa Rorug01G0142600.1 Rorug07G0139400 Rorug07G0139500 Rorug07G0139600 Rorug07G0139700.1 Rorug07G0139800 Rorug07G0140100
rosa_samantha Rh1AG159300 Rh1BG126400 Rh1CG148500 Rh7AG270700 Rh7AG270800 Rh7AG271200 Rh7AG271400 Rh7AG271500 Rh7BG266400 Rh7BG266600 Rh7BG267000 Rh7BG267100 Rh7BG267200 Rh7BG267400 Rh7CG290000 Rh7CG290100 Rh7CG290600 Rh7CG290700 Rh7CG290800 Rh7DG278900 Rh7DG279200 Rh7DG279300 Rh7DG279400 Rh7DG279500 Rh7DG279600
rosa_wichuraiana Rw1G013550 Rw7G023520 Rw7G023530 Rw7G023540 Rw7G023550 Rw7G023560 Rw7G023580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 351
Acc36I ACCTGC 2 cut(s) 650, 710
AccB7I CCANNNNNTGG 1 cut(s) 32
AccII CGCG 1 cut(s) 555
AclWI GGATC 3 cut(s) 26, 197, 775
AcsI RAATTY 2 cut(s) 383, 390
AcyI GRCGYC 1 cut(s) 348
AgsI TTSAA 2 cut(s) 94, 389
AjnI CCWGG 4 cut(s) 598, 652, 811, 841
AluBI AGCT 3 cut(s) 64, 272, 404
AluI AGCT 3 cut(s) 64, 272, 404
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 3 cut(s) 81, 479, 555
AlwI GGATC 3 cut(s) 26, 197, 775
Ama87I CYCGRG 4 cut(s) 84, 500, 509, 817
AoxI GGCC 8 cut(s) 461, 583, 596, 650, 709, 736, 814, 829
ApeKI GCWGC 2 cut(s) 325, 838
ApoI RAATTY 2 cut(s) 383, 390
AspLEI GCGC 1 cut(s) 325
AsuC2I CCSGG 6 cut(s) 501, 502, 624, 735, 818, 819
AsuHPI GGTGA 1 cut(s) 403
AvaI CYCGRG 4 cut(s) 84, 500, 509, 817
AvaII GGWCC 2 cut(s) 557, 809
BaeGI GKGCMC 1 cut(s) 777
BanII GRGCYC 2 cut(s) 66, 194
Bbv12I GWGCWC 1 cut(s) 66
BbvCI CCTCAGC 2 cut(s) 219, 231
BbvI GCAGC 2 cut(s) 312, 850
BccI CCATC 5 cut(s) 140, 202, 214, 349, 840
BceAI ACGGC 1 cut(s) 323
BciT130I CCWGG 4 cut(s) 600, 654, 813, 843
BcnI CCSGG 6 cut(s) 501, 502, 624, 735, 818, 819
BcoDI GTCTC 3 cut(s) 81, 479, 555
BfaI CTAG 1 cut(s) 56
BfuAI ACCTGC 2 cut(s) 650, 710
BisI GCNGC 6 cut(s) 215, 326, 432, 583, 637, 839
BlsI GCNGC 6 cut(s) 216, 327, 433, 584, 638, 840
Bme18I GGWCC 2 cut(s) 557, 809
BmeT110I CYCGRG 4 cut(s) 84, 500, 509, 817
BmiI GGNNCC 1 cut(s) 830
BmsI GCATC 3 cut(s) 293, 733, 858
Bpu10I CCTNAGC 2 cut(s) 219, 231
BpuEI CTTGAG 1 cut(s) 302
BpuMI CCSGG 6 cut(s) 501, 502, 624, 735, 818, 819
BsaBI GATNNNNATC 1 cut(s) 17
BsaHI GRCGYC 1 cut(s) 348
BsaI GGTCTC 1 cut(s) 479
BsaJI CCNNGG 8 cut(s) 435, 465, 499, 500, 510, 682, 817, 856
Bse8I GATNNNNATC 1 cut(s) 17
BseBI CCWGG 4 cut(s) 600, 654, 813, 843
BseDI CCNNGG 8 cut(s) 435, 465, 499, 500, 510, 682, 817, 856
BseGI GGATG 2 cut(s) 132, 832
BseJI GATNNNNATC 1 cut(s) 17
BseMII CTCAG 2 cut(s) 233, 245
BseRI GAGGAG 2 cut(s) 115, 219
BseSI GKGCMC 1 cut(s) 777
BseXI GCAGC 2 cut(s) 312, 850
Bsh1236I CGCG 1 cut(s) 555
BshFI GGCC 8 cut(s) 463, 585, 598, 652, 711, 738, 816, 831
BsiHKAI GWGCWC 1 cut(s) 66
BsiHKCI CYCGRG 4 cut(s) 84, 500, 509, 817
BsiSI CCGG 4 cut(s) 501, 624, 734, 818
BslFI GGGAC 1 cut(s) 54
BsmAI GTCTC 3 cut(s) 81, 479, 555
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 8 cut(s) 463, 585, 598, 652, 711, 738, 816, 831
Bso31I GGTCTC 1 cut(s) 479
BsoBI CYCGRG 4 cut(s) 84, 500, 509, 817
Bsp1286I GDGCHC 3 cut(s) 66, 194, 777
Bsp143I GATC 5 cut(s) 18, 202, 253, 767, 877
Bsp19I CCATGG 1 cut(s) 435
BspANI GGCC 8 cut(s) 463, 585, 598, 652, 711, 738, 816, 831
BspCNI CTCAG 2 cut(s) 232, 244
BspFNI CGCG 1 cut(s) 555
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 830
BspMI ACCTGC 2 cut(s) 650, 710
BspPI GGATC 3 cut(s) 26, 197, 775
BspTNI GGTCTC 1 cut(s) 479
BssECI CCNNGG 8 cut(s) 435, 465, 499, 500, 510, 682, 817, 856
BssMI GATC 5 cut(s) 18, 202, 253, 767, 877
BssNI GRCGYC 1 cut(s) 348
BssT1I CCWWGG 3 cut(s) 435, 465, 682
Bst2UI CCWGG 4 cut(s) 600, 654, 813, 843
Bst4CI ACNGT 5 cut(s) 278, 400, 549, 572, 779
Bst6I CTCTTC 3 cut(s) 53, 133, 145
BstACI GRCGYC 1 cut(s) 348
BstAPI GCANNNNNTGC 1 cut(s) 781
BstC8I GCNNGC 2 cut(s) 152, 424
BstDEI CTNAG 2 cut(s) 219, 231
BstDSI CCRYGG 2 cut(s) 435, 856
BstEII GGTNACC 1 cut(s) 504
BstF5I GGATG 2 cut(s) 132, 832
BstFNI CGCG 1 cut(s) 555
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 5 cut(s) 21, 205, 256, 770, 880
BstMAI GTCTC 3 cut(s) 81, 479, 555
BstMBI GATC 5 cut(s) 18, 202, 253, 767, 877
BstMWI GCNNNNNNNGC 4 cut(s) 61, 220, 428, 781
BstNI CCWGG 4 cut(s) 600, 654, 813, 843
BstPI GGTNACC 1 cut(s) 504
BstSLI GKGCMC 1 cut(s) 777
BstUI CGCG 1 cut(s) 555
BstV1I GCAGC 2 cut(s) 312, 850
BsuRI GGCC 8 cut(s) 463, 585, 598, 652, 711, 738, 816, 831
BtgI CCRYGG 2 cut(s) 435, 856
BtsCI GGATG 2 cut(s) 132, 832
BveI ACCTGC 2 cut(s) 650, 710
Cac8I GCNNGC 2 cut(s) 152, 424
CciI TCATGA 1 cut(s) 351
CfoI GCGC 1 cut(s) 325
Cfr9I CCCGGG 2 cut(s) 500, 817
CviAII CATG 5 cut(s) 352, 436, 448, 575, 629
DdeI CTNAG 2 cut(s) 219, 231
DpnI GATC 5 cut(s) 20, 204, 255, 769, 879
DpnII GATC 5 cut(s) 18, 202, 253, 767, 877
Eam1104I CTCTTC 3 cut(s) 53, 133, 145
EarI CTCTTC 3 cut(s) 53, 133, 145
EciI GGCGGA 3 cut(s) 137, 606, 660
Ecl136II GAGCTC 1 cut(s) 64
Eco130I CCWWGG 3 cut(s) 435, 465, 682
Eco24I GRGCYC 2 cut(s) 66, 194
Eco31I GGTCTC 1 cut(s) 479
Eco32I GATATC 1 cut(s) 472
Eco47I GGWCC 2 cut(s) 557, 809
Eco53kI GAGCTC 1 cut(s) 64
Eco88I CYCGRG 4 cut(s) 84, 500, 509, 817
Eco91I GGTNACC 1 cut(s) 504
EcoICRI GAGCTC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 504
EcoRII CCWGG 4 cut(s) 598, 652, 811, 841
EcoRV GATATC 1 cut(s) 472
EcoT14I CCWWGG 3 cut(s) 435, 465, 682
EcoT38I GRGCYC 2 cut(s) 66, 194
ErhI CCWWGG 3 cut(s) 435, 465, 682
FaeI CATG 5 cut(s) 355, 439, 451, 578, 632
FaqI GGGAC 1 cut(s) 54
FatI CATG 5 cut(s) 351, 435, 447, 574, 628
FauI CCCGC 3 cut(s) 60, 165, 804
Fnu4HI GCNGC 6 cut(s) 215, 326, 432, 583, 637, 839
FokI GGATG 2 cut(s) 119, 819
FriOI GRGCYC 2 cut(s) 66, 194
Fsp4HI GCNGC 6 cut(s) 215, 326, 432, 583, 637, 839
FspBI CTAG 1 cut(s) 56
GlaI GCGC 1 cut(s) 324
GluI GCNGC 6 cut(s) 215, 326, 432, 583, 637, 839
HaeIII GGCC 8 cut(s) 463, 585, 598, 652, 711, 738, 816, 831
HapII CCGG 4 cut(s) 501, 624, 734, 818
HhaI GCGC 1 cut(s) 325
Hin1I GRCGYC 1 cut(s) 348
Hin1II CATG 5 cut(s) 355, 439, 451, 578, 632
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HinfI GANTC 2 cut(s) 185, 317
HpaII CCGG 4 cut(s) 501, 624, 734, 818
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 2 cut(s) 851, 860
Hpy188I TCNGA 4 cut(s) 202, 316, 481, 535
Hpy188III TCNNGA 4 cut(s) 84, 257, 281, 352
Hpy8I GTNNAC 2 cut(s) 851, 860
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 2 cut(s) 448, 819
HpyCH4III ACNGT 5 cut(s) 278, 400, 549, 572, 779
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 3 cut(s) 69, 719, 746
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 220, 428, 781
HpyF3I CTNAG 2 cut(s) 219, 231
HpySE526I ACGT 1 cut(s) 348
Hsp92I GRCGYC 1 cut(s) 348
Hsp92II CATG 5 cut(s) 355, 439, 451, 578, 632
HspAI GCGC 1 cut(s) 323
Kzo9I GATC 5 cut(s) 18, 202, 253, 767, 877
LmnI GCTCC 3 cut(s) 61, 501, 656
Lsp1109I GCAGC 2 cut(s) 312, 850
LweI GCATC 3 cut(s) 293, 733, 858
MaeI CTAG 1 cut(s) 56
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 504
MalI GATC 5 cut(s) 20, 204, 255, 769, 879
MboI GATC 5 cut(s) 18, 202, 253, 767, 877
MboII GAAGA 7 cut(s) 40, 105, 120, 132, 400, 834, 877
MhlI GDGCHC 3 cut(s) 66, 194, 777
MluCI AATT 2 cut(s) 383, 390
MmeI TCCRAC 3 cut(s) 141, 419, 504
MseI TTAA 3 cut(s) 378, 540, 804
MslI CAYNNNNRTG 1 cut(s) 573
MspI CCGG 4 cut(s) 501, 624, 734, 818
MvaI CCWGG 4 cut(s) 600, 654, 813, 843
MvnI CGCG 1 cut(s) 555
MwoI GCNNNNNNNGC 4 cut(s) 61, 220, 428, 781
NciI CCSGG 6 cut(s) 501, 502, 624, 735, 818, 819
NcoI CCATGG 1 cut(s) 435
NdeII GATC 5 cut(s) 18, 202, 253, 767, 877
NlaIII CATG 5 cut(s) 355, 439, 451, 578, 632
NlaIV GGNNCC 1 cut(s) 830
NmeAIII GCCGAG 1 cut(s) 439
PagI TCATGA 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 194
PfeI GAWTC 2 cut(s) 185, 317
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 6 cut(s) 216, 327, 433, 584, 638, 840
Psp124BI GAGCTC 1 cut(s) 66
Psp6I CCWGG 4 cut(s) 598, 652, 811, 841
PspEI GGTNACC 1 cut(s) 504
PspGI CCWGG 4 cut(s) 598, 652, 811, 841
PspN4I GGNNCC 1 cut(s) 830
RseI CAYNNNNRTG 1 cut(s) 573
SacI GAGCTC 1 cut(s) 66
SaqAI TTAA 3 cut(s) 378, 540, 804
SatI GCNGC 6 cut(s) 215, 326, 432, 583, 637, 839
Sau3AI GATC 5 cut(s) 18, 202, 253, 767, 877
SduI GDGCHC 3 cut(s) 66, 194, 777
SfaNI GCATC 3 cut(s) 293, 733, 858
SinI GGWCC 2 cut(s) 557, 809
SmaI CCCGGG 2 cut(s) 502, 819
SmiMI CAYNNNNRTG 1 cut(s) 573
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 2 cut(s) 383, 390
SspMI CTAG 1 cut(s) 56
SstI GAGCTC 1 cut(s) 66
StyI CCWWGG 3 cut(s) 435, 465, 682
TaaI ACNGT 5 cut(s) 278, 400, 549, 572, 779
TaiI ACGT 1 cut(s) 351
TaqI TCGA 2 cut(s) 188, 296
TaqII GACCGA 1 cut(s) 890
TasI AATT 2 cut(s) 383, 390
TauI GCSGC 4 cut(s) 217, 434, 585, 639
TfiI GAWTC 2 cut(s) 185, 317
Tru1I TTAA 3 cut(s) 378, 540, 804
Tru9I TTAA 3 cut(s) 378, 540, 804
TseI GCWGC 2 cut(s) 325, 838
TspGWI ACGGA 1 cut(s) 88
TspMI CCCGGG 2 cut(s) 500, 817
Van91I CCANNNNNTGG 1 cut(s) 32
VpaK11BI GGWCC 2 cut(s) 557, 809
XapI RAATTY 2 cut(s) 383, 390
XcmI CCANNNNNNNNNTGG 2 cut(s) 689, 746
XmaI CCCGGG 2 cut(s) 500, 817
XspI CTAG 1 cut(s) 56
ZraI GACGTC 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.