Rmu_sc0039394.1_g000001

UDP-glucoronosyl and UDP-glucosyl transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039394.1
OG0000465
Physical Location & Seq
Reverse (-)
2 .. 641
640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039394.1_g000001.1.cds

Sequence Viewer

Length: 605 bp
caccaccgtctgatccgtcgtccccgccgcaggagccgagttctcagccgcatcaccgccaccacggccagatggcagttgggcttgagaacctcctctcgacccgaaacgagagtccggattcagtccgacccctttgtgcagttcttgacaacatgatgagctggaattctgagttttttcaaaagtttgagattccggtggtcagctttttcacttccggagcttgctccgctgccatggagtatgccctgtggaaggcccacccgatagatgtcaaaccgggcgagacccgtttgctaccggggttacccgaagagatggctgtgacggtttcggatattaaacgggagtctcgtcggccaccattccccattggtggaggcggcccgccaggagggccgggaggtccgggagcgggctttcctcctcatggaccaccacatggtgggcctggcccgcaaagaatgggtcctccaaagccaggtgaccaaccacattggttagaggaggtcgagcaatctattggagtgatgatcaacacgtgtgatgagctagagcatccatttatcgaatacgtctccaacaagattgaaaaacccgtt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

201

Amino Acids

21.7

Weight (kDa)

5.42

Isoelectric Point (pI)

72.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48790 AT5G48790 AT5G48790
fragaria_vesca FvH4_5g23760 FvH4_5g23760 FvH4_5g23770 FvH4_5g23771 FvH4_5g23790 FvH4_5g23800 FvH4_7g03421 FvH4_7g07510
malus_domestica MD00G1000600.v1.1 MD06G1013900.v1.1
prunus_persica Prupe.2G101800_v2.0.a1 Prupe.5G022600_v2.0.a1 Prupe.5G022700_v2.0.a1
pyrus_communis pycom07g06280 pycom16g25400
rosa_chinensis RchiOBHm_Chr1g0337881 RchiOBHm_Chr1g0339341 RchiOBHm_Chr7g0213081 RchiOBHm_Chr7g0213111 RchiOBHm_Chr7g0213141 RchiOBHm_Chr7g0213151 RchiOBHm_Chr7g0213161 RchiOBHm_Chr7g0213181
rosa_laevigata RLG00000002825 RLG00000002828 RLG00000002829 RLG00000002832 RLG00000029226
rosa_multiflora Rmu_co8345885.1_g000002 Rmu_co8348513.1_g000001 Rmu_co8456259.1_g000001 Rmu_sc0000613.1_g000002 Rmu_sc0001121.1_g000005 Rmu_sc0001121.1_g000006 Rmu_sc0002989.1_g000003 Rmu_sc0015110.1_g000001 Rmu_sc0030208.1_g000001 Rmu_sc0030209.1_g000001 Rmu_sc0032877.1_g000001 Rmu_sc0039394.1_g000001 Rmu_ssc0000084.1_g000002 Rmu_ssc0000084.1_g000007 Rmu_ssc0000084.1_g000009 Rmu_ssc0000084.1_g000012
rosa_roxburghii Rroxscaffold_3G00246200 Rroxscaffold_3G00246210 Rroxscaffold_3G00246240 Rroxscaffold_3G00246250 Rroxscaffold_4G00313440
rosa_rugosa Rorug01G0142600.1 Rorug07G0139400 Rorug07G0139500 Rorug07G0139600 Rorug07G0139700.1 Rorug07G0139800 Rorug07G0140100
rosa_samantha Rh1AG159300 Rh1BG126400 Rh1CG148500 Rh7AG270700 Rh7AG270800 Rh7AG271200 Rh7AG271400 Rh7AG271500 Rh7BG266400 Rh7BG266600 Rh7BG267000 Rh7BG267100 Rh7BG267200 Rh7BG267400 Rh7CG290000 Rh7CG290100 Rh7CG290600 Rh7CG290700 Rh7CG290800 Rh7DG278900 Rh7DG279200 Rh7DG279300 Rh7DG279400 Rh7DG279500 Rh7DG279600
rosa_wichuraiana Rw1G013550 Rw7G023520 Rw7G023530 Rw7G023540 Rw7G023550 Rw7G023560 Rw7G023580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 445, 448
AccBSI CCGCTC 1 cut(s) 418
AccIII TCCGGA 2 cut(s) 117, 220
AciI CCGC 9 cut(s) 25, 28, 49, 57, 233, 386, 391, 418, 460
AclWI GGATC 1 cut(s) 7
AcoI YGGCCR 2 cut(s) 66, 361
AcsI RAATTY 1 cut(s) 168
AcvI CACGTG 1 cut(s) 545
AdeI CACNNNGTG 1 cut(s) 448
AfiI CCNNNNNNNGG 9 cut(s) 30, 258, 379, 397, 418, 433, 445, 448, 484
AflIII ACRYGT 2 cut(s) 542, 544
AgsI TTSAA 2 cut(s) 184, 595
AjnI CCWGG 3 cut(s) 393, 453, 483
AluBI AGCT 4 cut(s) 164, 209, 226, 555
AluI AGCT 4 cut(s) 164, 209, 226, 555
Alw26I GTCTC 3 cut(s) 283, 359, 585
AlwI GGATC 1 cut(s) 7
Aor13HI TCCGGA 2 cut(s) 117, 220
AoxI GGCC 7 cut(s) 66, 260, 361, 387, 400, 451, 456
ApeKI GCWGC 1 cut(s) 235
ApoI RAATTY 1 cut(s) 168
ArsI GACNNNNNNTTYG 4 cut(s) 99, 131, 456, 488
AspS9I GGNCC 8 cut(s) 261, 388, 400, 409, 436, 451, 457, 472
AsuC2I CCSGG 4 cut(s) 284, 305, 404, 413
AsuHPI GGTGA 2 cut(s) 46, 499
AvaII GGWCC 3 cut(s) 409, 436, 472
BbrPI CACGTG 1 cut(s) 545
BbvI GCAGC 1 cut(s) 222
BccI CCATC 2 cut(s) 66, 315
BceAI ACGGC 1 cut(s) 81
BciT130I CCWGG 3 cut(s) 395, 455, 485
BclI TGATCA 1 cut(s) 536
BcnI CCSGG 4 cut(s) 284, 305, 404, 413
BcoDI GTCTC 3 cut(s) 283, 359, 585
BfaI CTAG 1 cut(s) 556
BglI GCCNNNNNGGC 2 cut(s) 65, 399
BisI GCNGC 4 cut(s) 28, 49, 236, 387
BlsI GCNGC 4 cut(s) 29, 50, 237, 388
Bme1390I CCNGG 7 cut(s) 284, 305, 395, 404, 413, 455, 485
Bme18I GGWCC 3 cut(s) 409, 436, 472
BmgT120I GGNCC 8 cut(s) 261, 388, 400, 409, 436, 451, 457, 472
BmiI GGNNCC 2 cut(s) 35, 473
BmrFI CCNGG 7 cut(s) 284, 305, 395, 404, 413, 455, 485
BmsI GCATC 2 cut(s) 60, 570
BpuEI CTTGAG 1 cut(s) 106
BpuMI CCSGG 4 cut(s) 284, 305, 404, 413
BsaAI YACGTR 1 cut(s) 545
BsaI GGTCTC 1 cut(s) 283
BsaJI CCNNGG 3 cut(s) 63, 239, 304
BsaWI WCCGGW 3 cut(s) 117, 198, 220
Bsc4I CCNNNNNNNGG 9 cut(s) 30, 258, 379, 397, 418, 433, 445, 448, 484
BseAI TCCGGA 2 cut(s) 117, 220
BseBI CCWGG 3 cut(s) 395, 455, 485
BseDI CCNNGG 3 cut(s) 63, 239, 304
BseGI GGATG 1 cut(s) 561
BseLI CCNNNNNNNGG 9 cut(s) 30, 258, 379, 397, 418, 433, 445, 448, 484
BseMII CTCAG 2 cut(s) 58, 164
BseRI GAGGAG 3 cut(s) 85, 419, 523
BseXI GCAGC 1 cut(s) 222
BsgI GTGCAG 1 cut(s) 161
BshFI GGCC 7 cut(s) 68, 262, 363, 389, 402, 453, 458
BsiSI CCGG 7 cut(s) 118, 199, 221, 283, 304, 403, 412
BslFI GGGAC 1 cut(s) 6
BslI CCNNNNNNNGG 9 cut(s) 30, 258, 379, 397, 418, 433, 445, 448, 484
BsmAI GTCTC 3 cut(s) 283, 359, 585
BsmBI CGTCTC 1 cut(s) 585
BsmFI GGGAC 1 cut(s) 6
BsnI GGCC 7 cut(s) 68, 262, 363, 389, 402, 453, 458
Bso31I GGTCTC 1 cut(s) 283
Bsp13I TCCGGA 2 cut(s) 117, 220
Bsp143I GATC 2 cut(s) 12, 536
Bsp19I CCATGG 1 cut(s) 239
BspACI CCGC 9 cut(s) 25, 28, 49, 57, 233, 386, 391, 418, 460
BspANI GGCC 7 cut(s) 68, 262, 363, 389, 402, 453, 458
BspCNI CTCAG 2 cut(s) 57, 165
BspEI TCCGGA 2 cut(s) 117, 220
BspLI GGNNCC 2 cut(s) 35, 473
BspPI GGATC 1 cut(s) 7
BspTNI GGTCTC 1 cut(s) 283
BsrBI CCGCTC 1 cut(s) 418
BssECI CCNNGG 3 cut(s) 63, 239, 304
BssMI GATC 2 cut(s) 12, 536
BssT1I CCWWGG 1 cut(s) 239
Bst2UI CCWGG 3 cut(s) 395, 455, 485
Bst4CI ACNGT 2 cut(s) 8, 333
Bst6I CTCTTC 1 cut(s) 311
BstBAI YACGTR 1 cut(s) 545
BstC8I GCNNGC 4 cut(s) 228, 391, 420, 460
BstDEI CTNAG 2 cut(s) 44, 173
BstDSI CCRYGG 2 cut(s) 63, 239
BstEII GGTNACC 2 cut(s) 308, 487
BstENI CCTNNNNNAGG 1 cut(s) 256
BstF5I GGATG 1 cut(s) 561
BstKTI GATC 2 cut(s) 15, 539
BstMAI GTCTC 3 cut(s) 283, 359, 585
BstMBI GATC 2 cut(s) 12, 536
BstMWI GCNNNNNNNGC 5 cut(s) 33, 65, 232, 399, 459
BstNI CCWGG 3 cut(s) 395, 455, 485
BstPI GGTNACC 2 cut(s) 308, 487
BstSCI CCNGG 7 cut(s) 282, 303, 393, 402, 411, 453, 483
BstV1I GCAGC 1 cut(s) 222
BsuRI GGCC 7 cut(s) 68, 262, 363, 389, 402, 453, 458
BtgI CCRYGG 2 cut(s) 63, 239
BtsCI GGATG 1 cut(s) 561
Cac8I GCNNGC 4 cut(s) 228, 391, 420, 460
Cfr13I GGNCC 8 cut(s) 261, 388, 400, 409, 436, 451, 457, 472
CviAII CATG 4 cut(s) 156, 240, 433, 445
DdeI CTNAG 2 cut(s) 44, 173
DpnI GATC 2 cut(s) 14, 538
DpnII GATC 2 cut(s) 12, 536
DraIII CACNNNGTG 1 cut(s) 448
EaeI YGGCCR 2 cut(s) 66, 361
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco130I CCWWGG 1 cut(s) 239
Eco31I GGTCTC 1 cut(s) 283
Eco47I GGWCC 3 cut(s) 409, 436, 472
Eco72I CACGTG 1 cut(s) 545
Eco91I GGTNACC 2 cut(s) 308, 487
EcoNI CCTNNNNNAGG 1 cut(s) 256
EcoO109I RGGNCCY 1 cut(s) 472
EcoO65I GGTNACC 2 cut(s) 308, 487
EcoRI GAATTC 1 cut(s) 168
EcoRII CCWGG 3 cut(s) 393, 453, 483
EcoT14I CCWWGG 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 239
Esp3I CGTCTC 1 cut(s) 585
FaeI CATG 4 cut(s) 159, 243, 436, 448
FaiI YATR 5 cut(s) 157, 241, 248, 434, 446
FaqI GGGAC 1 cut(s) 6
FatI CATG 4 cut(s) 155, 239, 432, 444
FauI CCCGC 4 cut(s) 32, 398, 411, 467
FbaI TGATCA 1 cut(s) 536
Fnu4HI GCNGC 4 cut(s) 28, 49, 236, 387
FokI GGATG 1 cut(s) 548
Fsp4HI GCNGC 4 cut(s) 28, 49, 236, 387
FspBI CTAG 1 cut(s) 556
GluI GCNGC 4 cut(s) 28, 49, 236, 387
HaeIII GGCC 7 cut(s) 68, 262, 363, 389, 402, 453, 458
HapII CCGG 7 cut(s) 118, 199, 221, 283, 304, 403, 412
Hin1II CATG 4 cut(s) 159, 243, 436, 448
HinfI GANTC 4 cut(s) 114, 121, 195, 352
HpaII CCGG 7 cut(s) 118, 199, 221, 283, 304, 403, 412
HphI GGTGA 2 cut(s) 46, 499
Hpy188I TCNGA 4 cut(s) 12, 130, 174, 339
Hpy188III TCNNGA 4 cut(s) 99, 118, 148, 221
Hpy99I CGWCG 2 cut(s) 21, 362
HpyAV CCTTC 1 cut(s) 252
HpyCH4III ACNGT 2 cut(s) 8, 333
HpyCH4IV ACGT 2 cut(s) 544, 578
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 65, 232, 399, 459
HpyF3I CTNAG 2 cut(s) 44, 173
HpySE526I ACGT 2 cut(s) 544, 578
Hsp92II CATG 4 cut(s) 159, 243, 436, 448
Kpn2I TCCGGA 2 cut(s) 117, 220
Ksp22I TGATCA 1 cut(s) 536
Kzo9I GATC 2 cut(s) 12, 536
LmnI GCTCC 4 cut(s) 33, 223, 235, 415
Lsp1109I GCAGC 1 cut(s) 222
LweI GCATC 2 cut(s) 60, 570
MaeI CTAG 1 cut(s) 556
MaeII ACGT 2 cut(s) 544, 578
MaeIII GTNAC 3 cut(s) 308, 327, 487
MalI GATC 2 cut(s) 14, 538
MbiI CCGCTC 1 cut(s) 418
MboI GATC 2 cut(s) 12, 536
MboII GAAGA 1 cut(s) 328
MluCI AATT 1 cut(s) 168
MlyI GAGTC 2 cut(s) 123, 361
MmeI TCCRAC 1 cut(s) 153
MroI TCCGGA 2 cut(s) 117, 220
MseI TTAA 1 cut(s) 344
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 7 cut(s) 118, 199, 221, 283, 304, 403, 412
MspR9I CCNGG 7 cut(s) 284, 305, 395, 404, 413, 455, 485
MvaI CCWGG 3 cut(s) 395, 455, 485
MwoI GCNNNNNNNGC 5 cut(s) 33, 65, 232, 399, 459
NciI CCSGG 4 cut(s) 284, 305, 404, 413
NcoI CCATGG 1 cut(s) 239
NdeII GATC 2 cut(s) 12, 536
NlaIII CATG 4 cut(s) 159, 243, 436, 448
NlaIV GGNNCC 2 cut(s) 35, 473
NmeAIII GCCGAG 1 cut(s) 62
NmuCI GTSAC 2 cut(s) 327, 487
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PfeI GAWTC 2 cut(s) 121, 195
PflMI CCANNNNNTGG 2 cut(s) 445, 448
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 4 cut(s) 29, 50, 237, 388
PleI GAGTC 2 cut(s) 122, 360
PmaCI CACGTG 1 cut(s) 545
PmlI CACGTG 1 cut(s) 545
PpsI GAGTC 2 cut(s) 122, 360
Ppu21I YACGTR 1 cut(s) 545
PpuMI RGGWCCY 1 cut(s) 472
Psp5II RGGWCCY 1 cut(s) 472
Psp6I CCWGG 3 cut(s) 393, 453, 483
PspCI CACGTG 1 cut(s) 545
PspEI GGTNACC 2 cut(s) 308, 487
PspGI CCWGG 3 cut(s) 393, 453, 483
PspN4I GGNNCC 2 cut(s) 35, 473
PspPI GGNCC 8 cut(s) 261, 388, 400, 409, 436, 451, 457, 472
PspPPI RGGWCCY 1 cut(s) 472
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 4 cut(s) 28, 49, 236, 387
Sau3AI GATC 2 cut(s) 12, 536
Sau96I GGNCC 8 cut(s) 261, 388, 400, 409, 436, 451, 457, 472
SchI GAGTC 2 cut(s) 123, 361
ScrFI CCNGG 7 cut(s) 284, 305, 395, 404, 413, 455, 485
SfaNI GCATC 2 cut(s) 60, 570
SinI GGWCC 3 cut(s) 409, 436, 472
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 1 cut(s) 168
SsiI CCGC 9 cut(s) 25, 28, 49, 57, 233, 386, 391, 418, 460
SspMI CTAG 1 cut(s) 556
StyD4I CCNGG 7 cut(s) 282, 303, 393, 402, 411, 453, 483
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 2 cut(s) 8, 333
TaiI ACGT 2 cut(s) 547, 581
TaqI TCGA 3 cut(s) 100, 515, 572
TasI AATT 1 cut(s) 168
TauI GCSGC 3 cut(s) 30, 51, 389
TfiI GAWTC 2 cut(s) 121, 195
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TseFI GTSAC 2 cut(s) 327, 487
TseI GCWGC 1 cut(s) 235
Tsp45I GTSAC 2 cut(s) 327, 487
TspGWI ACGGA 1 cut(s) 5
Van91I CCANNNNNTGG 2 cut(s) 445, 448
VpaK11BI GGWCC 3 cut(s) 409, 436, 472
XagI CCTNNNNNAGG 1 cut(s) 256
XapI RAATTY 1 cut(s) 168
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.