RchiOBHm_Chr1g0337881

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000465
Physical Location & Seq
Reverse (-)
29889437 .. 29892916
3480 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56576

Sequence Viewer

Length: 759 bp
ATGTTCAACACGTGTGACTACCTGGAGCGTCCGTTCATCGACTACATGACGGAGCAGATGGGGATTCCGACGTGGGGAGTGGGCCCGCTATTACCGGAATCATATTGGCAGTCGCCGTCGGATTCTTCAATCCGCCACCGTCAGATCAGAGCTAAGCAGCGGCAATCGAACTACACCGAAGACGACGTCGTTAAGTGGCTGGACGGAAAGCCTCCCGGGTCGGTGTTGTACGTGGCGTTCGGAAGTGAAGTGGGTCCGACTCCGGAAGAGTATCCGGAGCTGGCTGGCGCATTGGAGGAGTCGACCGGGCCGTTCATCTGGGTCATCCAACCCGGGTCGGGTGGGTCCGAACCAGGCTATGGGTTGGAGAGCAAAGTGGGGGAGAGGGTTTTAATACGGGGATGGGCACCACAGCTGTTGATACTGAGCCACCCATCAACGGGTGGGTTCTTATCACATTGTGGGTGGAACTCAACGGCGGAAGCGTTGGGCCGGGGAGTGCCGTTTTTGGGGTGGCCGGTTAGAGGTGATCAGTACTTCAATGCAAAATTGGTGGTGAACCATTTGAAGGAAGGAGGATGTTGTGAGAGGATAGAGAAGCTGATGGGGGATGAGGAGATGAAGAAGAGGGCGTTGGCGATACGGCAGAAGTTTGAGAATGGGTTTCCGGCCAGCTCCGAGGCGGCATTGGATGCTTTTGGTGATTTTATTACTAGCGAAAAGCAACTTAGAAGTTATATACATACACAAATAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

252

Amino Acids

28.03

Weight (kDa)

5.23

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 75 - 187 1.6e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48790 AT5G48790 AT5G48790
fragaria_vesca FvH4_5g23760 FvH4_5g23760 FvH4_5g23770 FvH4_5g23771 FvH4_5g23790 FvH4_5g23800 FvH4_7g03421 FvH4_7g07510
malus_domestica MD00G1000600.v1.1 MD06G1013900.v1.1
prunus_persica Prupe.2G101800_v2.0.a1 Prupe.5G022600_v2.0.a1 Prupe.5G022700_v2.0.a1
pyrus_communis pycom07g06280 pycom16g25400
rosa_chinensis RchiOBHm_Chr1g0337881 RchiOBHm_Chr1g0339341 RchiOBHm_Chr7g0213081 RchiOBHm_Chr7g0213111 RchiOBHm_Chr7g0213141 RchiOBHm_Chr7g0213151 RchiOBHm_Chr7g0213161 RchiOBHm_Chr7g0213181
rosa_laevigata RLG00000002825 RLG00000002828 RLG00000002829 RLG00000002832 RLG00000029226
rosa_multiflora Rmu_co8345885.1_g000002 Rmu_co8348513.1_g000001 Rmu_co8456259.1_g000001 Rmu_sc0000613.1_g000002 Rmu_sc0001121.1_g000005 Rmu_sc0001121.1_g000006 Rmu_sc0002989.1_g000003 Rmu_sc0015110.1_g000001 Rmu_sc0030208.1_g000001 Rmu_sc0030209.1_g000001 Rmu_sc0032877.1_g000001 Rmu_sc0039394.1_g000001 Rmu_ssc0000084.1_g000002 Rmu_ssc0000084.1_g000007 Rmu_ssc0000084.1_g000009 Rmu_ssc0000084.1_g000012
rosa_roxburghii Rroxscaffold_3G00246200 Rroxscaffold_3G00246210 Rroxscaffold_3G00246240 Rroxscaffold_3G00246250 Rroxscaffold_4G00313440
rosa_rugosa Rorug01G0142600.1 Rorug07G0139400 Rorug07G0139500 Rorug07G0139600 Rorug07G0139700.1 Rorug07G0139800 Rorug07G0140100
rosa_samantha Rh1AG159300 Rh1BG126400 Rh1CG148500 Rh7AG270700 Rh7AG270800 Rh7AG271200 Rh7AG271400 Rh7AG271500 Rh7BG266400 Rh7BG266600 Rh7BG267000 Rh7BG267100 Rh7BG267200 Rh7BG267400 Rh7CG290000 Rh7CG290100 Rh7CG290600 Rh7CG290700 Rh7CG290800 Rh7DG278900 Rh7DG279200 Rh7DG279300 Rh7DG279400 Rh7DG279500 Rh7DG279600
rosa_wichuraiana Rw1G013550 Rw7G023520 Rw7G023530 Rw7G023540 Rw7G023550 Rw7G023560 Rw7G023580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 189
AccB1I GGYRCC 1 cut(s) 406
AccB7I CCANNNNNTGG 1 cut(s) 359
AccI GTMKAC 1 cut(s) 302
AccIII TCCGGA 2 cut(s) 262, 274
AciI CCGC 5 cut(s) 86, 133, 160, 479, 683
AcoI YGGCCR 2 cut(s) 515, 669
AcvI CACGTG 1 cut(s) 12
AcyI GRCGYC 1 cut(s) 186
AdeI CACNNNGTG 1 cut(s) 461
AfaI GTAC 2 cut(s) 230, 536
AfiI CCNNNNNNNGG 8 cut(s) 74, 338, 359, 439, 440, 509, 524, 568
AflIII ACRYGT 2 cut(s) 9, 11
AgsI TTSAA 4 cut(s) 7, 129, 541, 568
AjiI CACGTC 1 cut(s) 72
AjnI CCWGG 2 cut(s) 21, 352
AjuI GAANNNNNNNTTGG 2 cut(s) 617, 649
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 5 cut(s) 152, 280, 415, 601, 675
AluI AGCT 5 cut(s) 152, 280, 415, 601, 675
Ama87I CYCGRG 2 cut(s) 215, 332
Aor13HI TCCGGA 2 cut(s) 262, 274
AoxI GGCC 5 cut(s) 82, 308, 490, 515, 669
ApaI GGGCCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 157
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 6 cut(s) 82, 83, 254, 308, 345, 490
AsuC2I CCSGG 6 cut(s) 216, 217, 307, 333, 334, 494
AsuHPI GGTGA 3 cut(s) 539, 568, 713
AvaI CYCGRG 2 cut(s) 215, 332
AvaII GGWCC 2 cut(s) 254, 345
BaeGI GKGCMC 2 cut(s) 86, 409
BanI GGYRCC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 86
BbrPI CACGTG 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 169
BccI CCATC 4 cut(s) 52, 396, 442, 598
BceAI ACGGC 5 cut(s) 100, 295, 487, 492, 659
BciT130I CCWGG 2 cut(s) 23, 354
BciVI GTATCC 1 cut(s) 282
BclI TGATCA 1 cut(s) 529
BcnI CCSGG 6 cut(s) 216, 217, 307, 333, 334, 494
BfaI CTAG 1 cut(s) 714
BfuI GTATCC 1 cut(s) 282
BisI GCNGC 3 cut(s) 158, 161, 684
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 3 cut(s) 159, 162, 685
BmcAI AGTACT 1 cut(s) 536
Bme1390I CCNGG 8 cut(s) 23, 216, 217, 307, 333, 334, 354, 494
Bme18I GGWCC 2 cut(s) 254, 345
BmeT110I CYCGRG 2 cut(s) 215, 332
BmgBI CACGTC 1 cut(s) 72
BmgT120I GGNCC 6 cut(s) 82, 83, 254, 308, 345, 490
BmiI GGNNCC 4 cut(s) 84, 255, 346, 408
BmrFI CCNGG 8 cut(s) 23, 216, 217, 307, 333, 334, 354, 494
BmsI GCATC 1 cut(s) 682
BpiI GAAGAC 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 44
Bpu1102I GCTNAGC 1 cut(s) 153
BpuMI CCSGG 6 cut(s) 216, 217, 307, 333, 334, 494
BsaAI YACGTR 2 cut(s) 12, 232
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 4 cut(s) 215, 332, 493, 678
BsaWI WCCGGW 3 cut(s) 94, 262, 274
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 8 cut(s) 74, 338, 359, 439, 440, 509, 524, 568
Bse118I RCCGGY 1 cut(s) 517
BseAI TCCGGA 2 cut(s) 262, 274
BseBI CCWGG 2 cut(s) 23, 354
BseDI CCNNGG 4 cut(s) 215, 332, 493, 678
BseGI GGATG 5 cut(s) 324, 407, 584, 616, 697
BseLI CCNNNNNNNGG 8 cut(s) 74, 338, 359, 439, 440, 509, 524, 568
BseMII CTCAG 1 cut(s) 416
BseRI GAGGAG 2 cut(s) 311, 629
BseSI GKGCMC 2 cut(s) 86, 409
BseXI GCAGC 1 cut(s) 169
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 5 cut(s) 84, 310, 492, 517, 671
BshNI GGYRCC 1 cut(s) 406
BsiEI CGRYCG 1 cut(s) 306
BsiHKCI CYCGRG 2 cut(s) 215, 332
BsiSI CCGG 9 cut(s) 95, 216, 263, 275, 306, 333, 493, 518, 668
BslI CCNNNNNNNGG 8 cut(s) 74, 338, 359, 439, 440, 509, 524, 568
BsnI GGCC 5 cut(s) 84, 310, 492, 517, 671
BsoBI CYCGRG 2 cut(s) 215, 332
Bsp120I GGGCCC 1 cut(s) 82
Bsp1286I GDGCHC 2 cut(s) 86, 409
Bsp13I TCCGGA 2 cut(s) 262, 274
Bsp143I GATC 2 cut(s) 144, 529
Bsp1720I GCTNAGC 1 cut(s) 153
BspACI CCGC 5 cut(s) 86, 133, 160, 479, 683
BspANI GGCC 5 cut(s) 84, 310, 492, 517, 671
BspCNI CTCAG 1 cut(s) 417
BspEI TCCGGA 2 cut(s) 262, 274
BspLI GGNNCC 4 cut(s) 84, 255, 346, 408
BspT107I GGYRCC 1 cut(s) 406
BsrFI RCCGGY 1 cut(s) 517
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 4 cut(s) 215, 332, 493, 678
BssMI GATC 2 cut(s) 144, 529
BssNI GRCGYC 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 23, 354
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 2 cut(s) 261, 620
BstACI GRCGYC 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 692
BstBAI YACGTR 2 cut(s) 12, 232
BstC8I GCNNGC 4 cut(s) 86, 282, 286, 673
BstDEI CTNAG 3 cut(s) 153, 425, 728
BstF5I GGATG 5 cut(s) 324, 407, 584, 616, 697
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 2 cut(s) 147, 532
BstMBI GATC 2 cut(s) 144, 529
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 1 cut(s) 692
BstNI CCWGG 2 cut(s) 23, 354
BstSCI CCNGG 8 cut(s) 21, 214, 215, 305, 331, 332, 352, 492
BstSLI GKGCMC 2 cut(s) 86, 409
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 186
BsuI GTATCC 1 cut(s) 282
BsuRI GGCC 5 cut(s) 84, 310, 492, 517, 671
BtrI CACGTC 1 cut(s) 72
BtsCI GGATG 5 cut(s) 324, 407, 584, 616, 697
Cac8I GCNNGC 4 cut(s) 86, 282, 286, 673
CfoI GCGC 1 cut(s) 290
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 6 cut(s) 82, 83, 254, 308, 345, 490
Cfr9I CCCGGG 2 cut(s) 215, 332
CseI GACGC 1 cut(s) 17
Csp6I GTAC 2 cut(s) 229, 535
CspCI CAANNNNNGTGG 4 cut(s) 399, 434, 534, 569
CviAII CATG 1 cut(s) 46
CviQI GTAC 2 cut(s) 229, 535
DdeI CTNAG 3 cut(s) 153, 425, 728
DpnI GATC 2 cut(s) 146, 531
DpnII GATC 2 cut(s) 144, 529
DraIII CACNNNGTG 1 cut(s) 461
EaeI YGGCCR 2 cut(s) 515, 669
Eam1104I CTCTTC 2 cut(s) 261, 620
EarI CTCTTC 2 cut(s) 261, 620
EciI GGCGGA 2 cut(s) 122, 494
Eco24I GRGCYC 1 cut(s) 86
Eco47I GGWCC 2 cut(s) 254, 345
Eco72I CACGTG 1 cut(s) 12
Eco88I CYCGRG 2 cut(s) 215, 332
EcoRII CCWGG 2 cut(s) 21, 352
EcoT38I GRGCYC 1 cut(s) 86
FaeI CATG 1 cut(s) 49
FaiI YATR 6 cut(s) 47, 103, 360, 738, 740, 744
FatI CATG 1 cut(s) 45
FauI CCCGC 1 cut(s) 93
FbaI TGATCA 1 cut(s) 529
FblI GTMKAC 1 cut(s) 302
Fnu4HI GCNGC 3 cut(s) 158, 161, 684
FokI GGATG 5 cut(s) 311, 414, 591, 623, 704
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 3 cut(s) 158, 161, 684
FspBI CTAG 1 cut(s) 714
GlaI GCGC 1 cut(s) 289
GluI GCNGC 3 cut(s) 158, 161, 684
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 5 cut(s) 84, 310, 492, 517, 671
HapII CCGG 9 cut(s) 95, 216, 263, 275, 306, 333, 493, 518, 668
HgaI GACGC 1 cut(s) 17
HhaI GCGC 1 cut(s) 290
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 5 cut(s) 64, 98, 122, 259, 299
HpaII CCGG 9 cut(s) 95, 216, 263, 275, 306, 333, 493, 518, 668
HphI GGTGA 3 cut(s) 539, 568, 713
Hpy166II GTNNAC 2 cut(s) 303, 559
Hpy188I TCNGA 8 cut(s) 69, 121, 144, 149, 242, 258, 349, 679
Hpy188III TCNNGA 2 cut(s) 263, 275
Hpy8I GTNNAC 2 cut(s) 303, 559
Hpy99I CGWCG 4 cut(s) 73, 121, 188, 191
HpyAV CCTTC 2 cut(s) 562, 566
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4IV ACGT 4 cut(s) 11, 71, 186, 231
HpyCH4V TGCA 1 cut(s) 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 692
HpyF3I CTNAG 3 cut(s) 153, 425, 728
HpySE526I ACGT 4 cut(s) 11, 71, 186, 231
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 1 cut(s) 288
Kpn2I TCCGGA 2 cut(s) 262, 274
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 2 cut(s) 144, 529
LmnI GCTCC 4 cut(s) 25, 52, 277, 680
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 682
MaeI CTAG 1 cut(s) 714
MaeII ACGT 4 cut(s) 11, 71, 186, 231
MaeIII GTNAC 1 cut(s) 14
MalI GATC 2 cut(s) 146, 531
MboI GATC 2 cut(s) 144, 529
MboII GAAGA 5 cut(s) 117, 191, 278, 634, 637
MhlI GDGCHC 2 cut(s) 86, 409
MluCI AATT 2 cut(s) 548, 753
MlyI GAGTC 2 cut(s) 253, 308
MmeI TCCRAC 5 cut(s) 92, 99, 281, 345, 352
MnlI CCTC 9 cut(s) 222, 289, 378, 518, 569, 582, 607, 621, 673
MroI TCCGGA 2 cut(s) 262, 274
MseI TTAA 2 cut(s) 192, 392
MspA1I CMGCKG 2 cut(s) 160, 415
MspI CCGG 9 cut(s) 95, 216, 263, 275, 306, 333, 493, 518, 668
MspR9I CCNGG 8 cut(s) 23, 216, 217, 307, 333, 334, 354, 494
MvaI CCWGG 2 cut(s) 23, 354
MwoI GCNNNNNNNGC 1 cut(s) 692
NciI CCSGG 6 cut(s) 216, 217, 307, 333, 334, 494
NdeII GATC 2 cut(s) 144, 529
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 4 cut(s) 84, 255, 346, 408
NmuCI GTSAC 1 cut(s) 14
PcsI WCGNNNNNNNCGW 2 cut(s) 308, 482
PfeI GAWTC 3 cut(s) 64, 98, 122
PflFI GACNNNGTC 1 cut(s) 185
PflMI CCANNNNNTGG 1 cut(s) 359
PkrI GCNGC 3 cut(s) 159, 162, 685
PleI GAGTC 2 cut(s) 253, 307
PmaCI CACGTG 1 cut(s) 12
PmlI CACGTG 1 cut(s) 12
PpsI GAGTC 2 cut(s) 253, 307
Ppu21I YACGTR 2 cut(s) 12, 232
Psp6I CCWGG 2 cut(s) 21, 352
PspCI CACGTG 1 cut(s) 12
PspGI CCWGG 2 cut(s) 21, 352
PspN4I GGNNCC 4 cut(s) 84, 255, 346, 408
PspOMI GGGCCC 1 cut(s) 82
PspPI GGNCC 6 cut(s) 82, 83, 254, 308, 345, 490
PsrI GAACNNNNNNTAC 2 cut(s) 221, 253
PsyI GACNNNGTC 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 415
RsaI GTAC 2 cut(s) 230, 536
RsaNI GTAC 2 cut(s) 229, 535
SalI GTCGAC 1 cut(s) 301
SaqAI TTAA 2 cut(s) 192, 392
SatI GCNGC 3 cut(s) 158, 161, 684
Sau3AI GATC 2 cut(s) 144, 529
Sau96I GGNCC 6 cut(s) 82, 83, 254, 308, 345, 490
ScaI AGTACT 1 cut(s) 536
SchI GAGTC 2 cut(s) 253, 308
ScrFI CCNGG 8 cut(s) 23, 216, 217, 307, 333, 334, 354, 494
SduI GDGCHC 2 cut(s) 86, 409
SfaNI GCATC 1 cut(s) 682
SinI GGWCC 2 cut(s) 254, 345
SmaI CCCGGG 2 cut(s) 217, 334
Sse9I AATT 2 cut(s) 548, 753
SsiI CCGC 5 cut(s) 86, 133, 160, 479, 683
SspMI CTAG 1 cut(s) 714
StyD4I CCNGG 8 cut(s) 21, 214, 215, 305, 331, 332, 352, 492
TaaI ACNGT 1 cut(s) 140
TaiI ACGT 4 cut(s) 14, 74, 189, 234
TaqI TCGA 3 cut(s) 39, 167, 302
TasI AATT 2 cut(s) 548, 753
TatI WGTACW 1 cut(s) 534
TauI GCSGC 2 cut(s) 163, 686
TfiI GAWTC 3 cut(s) 64, 98, 122
Tru1I TTAA 2 cut(s) 192, 392
Tru9I TTAA 2 cut(s) 192, 392
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 3 cut(s) 25, 304, 635
TspGWI ACGGA 3 cut(s) 21, 65, 219
TspMI CCCGGG 2 cut(s) 215, 332
Tth111I GACNNNGTC 1 cut(s) 185
Van91I CCANNNNNTGG 1 cut(s) 359
VpaK11BI GGWCC 2 cut(s) 254, 345
XmaI CCCGGG 2 cut(s) 215, 332
XmiI GTMKAC 1 cut(s) 302
XspI CTAG 1 cut(s) 714
ZraI GACGTC 1 cut(s) 187
ZrmI AGTACT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.