Rmu_co8345885.1_g000002

UDP-glucoronosyl and UDP-glucosyl transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8345885.1
OG0000465
Physical Location & Seq
Forward (+)
636 .. 1024
389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8345885.1_g000002.1.cds

Sequence Viewer

Length: 389 bp
atggcaaatgagatatggatcgttccgtttttcggtcagagccatctgtttcctttaatggagctctgcaagcacttggcctccagaaacttcaaagccgtttttgttatctcttccgaactctcctcctccatatcctcatctctccgccaatacccactcgtcgaaatcgctgaaatttctgaagcaccaccgtctgactcgtcttctccaccgcaggagccgagttctcagccgcttcaccgccaccacgcacggtacagccagatagcagtcgggcttgacaaactcctccatgatccggattcagtccgacgacccctttgtgcggttgttgacatgatgatgagctggacttccgagatttttaacagatacgaaattccggc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

130

Amino Acids

14.66

Weight (kDa)

5.81

Isoelectric Point (pI)

72.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48790 AT5G48790 AT5G48790
fragaria_vesca FvH4_5g23760 FvH4_5g23760 FvH4_5g23770 FvH4_5g23771 FvH4_5g23790 FvH4_5g23800 FvH4_7g03421 FvH4_7g07510
malus_domestica MD00G1000600.v1.1 MD06G1013900.v1.1
prunus_persica Prupe.2G101800_v2.0.a1 Prupe.5G022600_v2.0.a1 Prupe.5G022700_v2.0.a1
pyrus_communis pycom07g06280 pycom16g25400
rosa_chinensis RchiOBHm_Chr1g0337881 RchiOBHm_Chr1g0339341 RchiOBHm_Chr7g0213081 RchiOBHm_Chr7g0213111 RchiOBHm_Chr7g0213141 RchiOBHm_Chr7g0213151 RchiOBHm_Chr7g0213161 RchiOBHm_Chr7g0213181
rosa_laevigata RLG00000002825 RLG00000002828 RLG00000002829 RLG00000002832 RLG00000029226
rosa_multiflora Rmu_co8345885.1_g000002 Rmu_co8348513.1_g000001 Rmu_co8456259.1_g000001 Rmu_sc0000613.1_g000002 Rmu_sc0001121.1_g000005 Rmu_sc0001121.1_g000006 Rmu_sc0002989.1_g000003 Rmu_sc0015110.1_g000001 Rmu_sc0030208.1_g000001 Rmu_sc0030209.1_g000001 Rmu_sc0032877.1_g000001 Rmu_sc0039394.1_g000001 Rmu_ssc0000084.1_g000002 Rmu_ssc0000084.1_g000007 Rmu_ssc0000084.1_g000009 Rmu_ssc0000084.1_g000012
rosa_roxburghii Rroxscaffold_3G00246200 Rroxscaffold_3G00246210 Rroxscaffold_3G00246240 Rroxscaffold_3G00246250 Rroxscaffold_4G00313440
rosa_rugosa Rorug01G0142600.1 Rorug07G0139400 Rorug07G0139500 Rorug07G0139600 Rorug07G0139700.1 Rorug07G0139800 Rorug07G0140100
rosa_samantha Rh1AG159300 Rh1BG126400 Rh1CG148500 Rh7AG270700 Rh7AG270800 Rh7AG271200 Rh7AG271400 Rh7AG271500 Rh7BG266400 Rh7BG266600 Rh7BG267000 Rh7BG267100 Rh7BG267200 Rh7BG267400 Rh7CG290000 Rh7CG290100 Rh7CG290600 Rh7CG290700 Rh7CG290800 Rh7DG278900 Rh7DG279200 Rh7DG279300 Rh7DG279400 Rh7DG279500 Rh7DG279600
rosa_wichuraiana Rw1G013550 Rw7G023520 Rw7G023530 Rw7G023540 Rw7G023550 Rw7G023560 Rw7G023580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 301
AciI CCGC 5 cut(s) 148, 215, 236, 244, 329
AclWI GGATC 2 cut(s) 26, 293
AcsI RAATTY 2 cut(s) 177, 381
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 3 cut(s) 32, 301, 328
AgsI TTSAA 1 cut(s) 94
AluBI AGCT 2 cut(s) 64, 351
AluI AGCT 2 cut(s) 64, 351
Alw21I GWGCWC 1 cut(s) 66
AlwI GGATC 2 cut(s) 26, 293
Aor13HI TCCGGA 1 cut(s) 301
AoxI GGCC 1 cut(s) 78
ApoI RAATTY 2 cut(s) 177, 381
ArsI GACNNNNNNTTYG 2 cut(s) 306, 338
AsuHPI GGTGA 1 cut(s) 233
BanII GRGCYC 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 66
BccI CCATC 1 cut(s) 51
BceAI ACGGC 1 cut(s) 83
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 67
BsaBI GATNNNNATC 1 cut(s) 17
BsaWI WCCGGW 1 cut(s) 301
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 301, 328
Bse8I GATNNNNATC 1 cut(s) 17
BseAI TCCGGA 1 cut(s) 301
BseJI GATNNNNATC 1 cut(s) 17
BseLI CCNNNNNNNGG 3 cut(s) 32, 301, 328
BseMII CTCAG 1 cut(s) 245
BseRI GAGGAG 3 cut(s) 115, 118, 281
BshFI GGCC 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 2 cut(s) 302, 386
BslI CCNNNNNNNGG 3 cut(s) 32, 301, 328
BsnI GGCC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 66
Bsp13I TCCGGA 1 cut(s) 301
Bsp143I GATC 2 cut(s) 18, 298
BspACI CCGC 5 cut(s) 148, 215, 236, 244, 329
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 244
BspEI TCCGGA 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 222
BspPI GGATC 2 cut(s) 26, 293
BssMI GATC 2 cut(s) 18, 298
Bst4CI ACNGT 2 cut(s) 195, 258
Bst6I CTCTTC 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 231
BstKTI GATC 2 cut(s) 21, 301
BstMBI GATC 2 cut(s) 18, 298
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 296, 340
CviJI RGCY 9 cut(s) 42, 64, 80, 98, 223, 235, 264, 280, 351
CviKI_1 RGCY 9 cut(s) 42, 64, 80, 98, 223, 235, 264, 280, 351
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 20, 300
DpnII GATC 2 cut(s) 18, 298
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
EciI GGCGGA 1 cut(s) 137
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 204
EcoICRI GAGCTC 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 66
FaeI CATG 2 cut(s) 299, 343
FaiI YATR 4 cut(s) 16, 134, 297, 341
FatI CATG 2 cut(s) 295, 339
Fnu4HI GCNGC 1 cut(s) 236
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 236
GluI GCNGC 1 cut(s) 236
GsuI CTGGAG 1 cut(s) 67
HaeIII GGCC 1 cut(s) 80
HapII CCGG 2 cut(s) 302, 386
Hin1II CATG 2 cut(s) 299, 343
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 2 cut(s) 200, 305
HpaII CCGG 2 cut(s) 302, 386
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 6 cut(s) 39, 118, 184, 199, 314, 361
Hpy188III TCNNGA 2 cut(s) 84, 302
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 2 cut(s) 167, 318
HpyCH4III ACNGT 2 cut(s) 195, 258
HpyCH4V TGCA 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 2 cut(s) 299, 343
Kpn2I TCCGGA 1 cut(s) 301
Kzo9I GATC 2 cut(s) 18, 298
LmnI GCTCC 2 cut(s) 61, 220
LpnPI CCDG 5 cut(s) 97, 203, 278, 315, 337
MalI GATC 2 cut(s) 20, 300
MboI GATC 2 cut(s) 18, 298
MboII GAAGA 2 cut(s) 105, 198
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 2 cut(s) 177, 381
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 5 cut(s) 91, 136, 139, 148, 302
MroI TCCGGA 1 cut(s) 301
MseI TTAA 2 cut(s) 56, 369
MslI CAYNNNNRTG 1 cut(s) 344
MspI CCGG 2 cut(s) 302, 386
MwoI GCNNNNNNNGC 1 cut(s) 70
NdeII GATC 2 cut(s) 18, 298
NlaIII CATG 2 cut(s) 299, 343
NlaIV GGNNCC 1 cut(s) 222
NmeAIII GCCGAG 1 cut(s) 249
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 1 cut(s) 237
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
Psp124BI GAGCTC 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 222
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 344
SacI GAGCTC 1 cut(s) 66
SaqAI TTAA 2 cut(s) 56, 369
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 2 cut(s) 18, 298
SchI GAGTC 1 cut(s) 194
SduI GDGCHC 1 cut(s) 66
SetI ASST 2 cut(s) 66, 353
SmiMI CAYNNNNRTG 1 cut(s) 344
Sse9I AATT 2 cut(s) 177, 381
SsiI CCGC 5 cut(s) 148, 215, 236, 244, 329
SstI GAGCTC 1 cut(s) 66
TaaI ACNGT 2 cut(s) 195, 258
TaqI TCGA 1 cut(s) 165
TaqII GACCGA 1 cut(s) 23
TasI AATT 2 cut(s) 177, 381
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 2 cut(s) 56, 369
Tru9I TTAA 2 cut(s) 56, 369
TspGWI ACGGA 1 cut(s) 15
XapI RAATTY 2 cut(s) 177, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.