Rorug07G0139600

UDP-glucoronosyl and UDP-glucosyl transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000465
Physical Location & Seq
Forward (+)
10999305 .. 11022184
22880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0139600.1

Sequence Viewer

Length: 1182 bp
ATGACTACCTTGGAAATCATCATCACCTTCTCCATCTTGTTTTTCCTTTTTCCGAATCAAACATCAGCAACCTGTCATGAAACAAGATGCAAGGCCAAGGAACCATGGGTACGATTCCCTTTTCAACTACTAAGAGAAGGCCAAGACTTGGATTGTGGCTATGATCGAGGATTTGATCTCTCCTGCAGCAACCACCATAAGCGAACTATCCTCACTCTCCCATCTTCGAGAGACTTCATCGTGAAGGACATCAACTACATCGACCATATCATATGGATCGACGATCCCGGAAGCTGCTTGCCTAAGAGGCTCATGGACCATGACTTCAGTCTTGTGGACTCACCCTTCTCATACTTTTACGGCCTCGAAAGCTACGTGTTCCTCAACTGTTCGTCGACGTCCCGAGAAGAGATACTAGCACCGTCTTCACCAATTGATTGCCTCAGTAGTGAGGACTACAAGGTCATAGCTGTGCAGTCTACTTGGTTCTTTGCTGATCTTAATACATCAAGCACTTCATCGAGGCCACTGGCTCAGACATCGTTATCCCGTCTTTGTTCCGTGATCTCCACAGCTATGATTCCACTGTCAGGTTCATTTGACGGGTGGGATCTTAACTCTGGTGTTCGGTTGGCATGGGACATGCCCGATTGTCGTCTATGCGAAGCAAGCGGGAGATTATGTGGGTTTGATATTGCTACAACTTCGCCAGTTGTTGTGTGCTCTGGACTTTCAAATTCAGGTCTCTCAAATGCCGAAAAGTTCCGGTTACTAATAAACGTGGGAGTTCCGGGGCTAGTGTGCATCACTATGTTCGCACTTTATATTTACACCTTAATCAGGGACCGTGGTCGCATCAATGAACCCATCACAGAATTATCCAGTGTGACCATTCCACAGATTCATGTCGTTATAACGGGCCTTAATGATCTAACCATTGAATCATATCCGAAGACTCAACTTGGCGAGAAATGGGAATTTCCAAGTCCCGAGGACAGCACTTGCCCAATATGTTTGTGCGAGTACCAACCCGAGGAAACTATAAGGACAATACCTGAATGCAATCATCATTTTCATGCCAGTTGCATTGATGAGTGGCTCAGAAAGAATCCTACGTGCCCAGTTTGTCGAAAAGTTCCGCAGGAGGATAACAAAACAAGTCTCTCCCCAATTGAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

393

Amino Acids

44.21

Weight (kDa)

4.98

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 25 - 95 1.2e-13 Wall-associated receptor kinase galacturonan-binding
zf-RING_2 PF13639 334 - 377 7.5e-15 Ring finger domain
zf-rbx1 PF12678 334 - 377 1.2e-08 RING-H2 zinc finger domain
zf-RING_11 PF17123 335 - 363 4.2e-07 RING-like zinc finger
zf-C3HC4_2 PF13923 335 - 376 4.7e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 335 - 376 2.4e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48790 AT5G48790 AT5G48790
fragaria_vesca FvH4_5g23760 FvH4_5g23760 FvH4_5g23770 FvH4_5g23771 FvH4_5g23790 FvH4_5g23800 FvH4_7g03421 FvH4_7g07510
malus_domestica MD00G1000600.v1.1 MD06G1013900.v1.1
prunus_persica Prupe.2G101800_v2.0.a1 Prupe.5G022600_v2.0.a1 Prupe.5G022700_v2.0.a1
pyrus_communis pycom07g06280 pycom16g25400
rosa_chinensis RchiOBHm_Chr1g0337881 RchiOBHm_Chr1g0339341 RchiOBHm_Chr7g0213081 RchiOBHm_Chr7g0213111 RchiOBHm_Chr7g0213141 RchiOBHm_Chr7g0213151 RchiOBHm_Chr7g0213161 RchiOBHm_Chr7g0213181
rosa_laevigata RLG00000002825 RLG00000002828 RLG00000002829 RLG00000002832 RLG00000029226
rosa_multiflora Rmu_co8345885.1_g000002 Rmu_co8348513.1_g000001 Rmu_co8456259.1_g000001 Rmu_sc0000613.1_g000002 Rmu_sc0001121.1_g000005 Rmu_sc0001121.1_g000006 Rmu_sc0002989.1_g000003 Rmu_sc0015110.1_g000001 Rmu_sc0030208.1_g000001 Rmu_sc0030209.1_g000001 Rmu_sc0032877.1_g000001 Rmu_sc0039394.1_g000001 Rmu_ssc0000084.1_g000002 Rmu_ssc0000084.1_g000007 Rmu_ssc0000084.1_g000009 Rmu_ssc0000084.1_g000012
rosa_roxburghii Rroxscaffold_3G00246200 Rroxscaffold_3G00246210 Rroxscaffold_3G00246240 Rroxscaffold_3G00246250 Rroxscaffold_4G00313440
rosa_rugosa Rorug01G0142600.1 Rorug07G0139400 Rorug07G0139500 Rorug07G0139600 Rorug07G0139700.1 Rorug07G0139800 Rorug07G0140100
rosa_samantha Rh1AG159300 Rh1BG126400 Rh1CG148500 Rh7AG270700 Rh7AG270800 Rh7AG271200 Rh7AG271400 Rh7AG271500 Rh7BG266400 Rh7BG266600 Rh7BG267000 Rh7BG267100 Rh7BG267200 Rh7BG267400 Rh7CG290000 Rh7CG290100 Rh7CG290600 Rh7CG290700 Rh7CG290800 Rh7DG278900 Rh7DG279200 Rh7DG279300 Rh7DG279400 Rh7DG279500 Rh7DG279600
rosa_wichuraiana Rw1G013550 Rw7G023520 Rw7G023530 Rw7G023540 Rw7G023550 Rw7G023560 Rw7G023580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 914
AasI GACNNNNNNGTC 1 cut(s) 461
AatII GACGTC 1 cut(s) 401
AccB7I CCANNNNNTGG 1 cut(s) 148
AccI GTMKAC 2 cut(s) 395, 479
AciI CCGC 2 cut(s) 672, 1139
AclWI GGATC 3 cut(s) 278, 284, 618
AcsI RAATTY 2 cut(s) 736, 977
AcuI CTGAAG 1 cut(s) 310
AcyI GRCGYC 1 cut(s) 398
AfaI GTAC 2 cut(s) 111, 1025
AfiI CCNNNNNNNGG 4 cut(s) 148, 590, 840, 1033
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 3 cut(s) 125, 735, 941
AluBI AGCT 4 cut(s) 294, 372, 470, 575
AluI AGCT 4 cut(s) 294, 372, 470, 575
Alw21I GWGCWC 1 cut(s) 725
Alw26I GTCTC 4 cut(s) 225, 749, 1166, 1169
AlwI GGATC 3 cut(s) 278, 284, 618
Ama87I CYCGRG 3 cut(s) 402, 989, 1031
AoxI GGCC 5 cut(s) 93, 139, 361, 524, 919
ApeKI GCWGC 2 cut(s) 186, 294
ApoI RAATTY 2 cut(s) 736, 977
AspS9I GGNCC 3 cut(s) 316, 844, 919
AsuC2I CCSGG 2 cut(s) 288, 792
AsuHPI GGTGA 3 cut(s) 16, 333, 420
AvaI CYCGRG 3 cut(s) 402, 989, 1031
AvaII GGWCC 2 cut(s) 316, 844
BaeGI GKGCMC 1 cut(s) 1121
BbsI GAAGAC 2 cut(s) 417, 959
Bbv12I GWGCWC 1 cut(s) 725
BbvI GCAGC 2 cut(s) 198, 281
BccI CCATC 3 cut(s) 41, 229, 875
BceAI ACGGC 1 cut(s) 376
BcnI CCSGG 2 cut(s) 288, 792
BcoDI GTCTC 4 cut(s) 225, 749, 1166, 1169
BfaI CTAG 2 cut(s) 416, 797
BfmI CTRYAG 1 cut(s) 184
BglI GCCNNNNNGGC 1 cut(s) 307
BisI GCNGC 2 cut(s) 187, 295
BlsI GCNGC 2 cut(s) 188, 296
Bme1390I CCNGG 2 cut(s) 288, 792
Bme18I GGWCC 2 cut(s) 316, 844
BmeT110I CYCGRG 3 cut(s) 402, 989, 1031
BmgT120I GGNCC 3 cut(s) 316, 844, 919
BmiI GGNNCC 2 cut(s) 102, 845
BmrFI CCNGG 2 cut(s) 288, 792
BmrI ACTGGG 1 cut(s) 1115
BmsI GCATC 3 cut(s) 77, 813, 864
BmuI ACTGGG 1 cut(s) 1115
BoxI GACNNNNGTC 2 cut(s) 327, 849
BpiI GAAGAC 2 cut(s) 417, 959
BpuMI CCSGG 2 cut(s) 288, 792
BsaAI YACGTR 2 cut(s) 376, 1116
BsaHI GRCGYC 1 cut(s) 398
BsaI GGTCTC 1 cut(s) 749
BsaJI CCNNGG 7 cut(s) 9, 96, 104, 791, 847, 990, 1032
BsaWI WCCGGW 1 cut(s) 765
BsaXI ACNNNNNCTCC 2 cut(s) 667, 697
Bsc4I CCNNNNNNNGG 4 cut(s) 148, 590, 840, 1033
Bse1I ACTGG 5 cut(s) 534, 710, 882, 1080, 1121
BseDI CCNNGG 7 cut(s) 9, 96, 104, 791, 847, 990, 1032
BseLI CCNNNNNNNGG 4 cut(s) 148, 590, 840, 1033
BseMII CTCAG 3 cut(s) 457, 548, 1114
BseNI ACTGG 5 cut(s) 534, 710, 882, 1080, 1121
BseSI GKGCMC 1 cut(s) 1121
BseXI GCAGC 2 cut(s) 198, 281
BsgI GTGCAG 1 cut(s) 494
BshFI GGCC 5 cut(s) 95, 141, 363, 526, 921
BsiHKAI GWGCWC 1 cut(s) 725
BsiHKCI CYCGRG 3 cut(s) 402, 989, 1031
BsiSI CCGG 3 cut(s) 288, 766, 791
BslFI GGGAC 4 cut(s) 385, 653, 857, 972
BslI CCNNNNNNNGG 4 cut(s) 148, 590, 840, 1033
BsmAI GTCTC 4 cut(s) 225, 749, 1166, 1169
BsmFI GGGAC 4 cut(s) 385, 653, 857, 972
BsmI GAATGC 1 cut(s) 1064
BsnI GGCC 5 cut(s) 95, 141, 363, 526, 921
Bso31I GGTCTC 1 cut(s) 749
BsoBI CYCGRG 3 cut(s) 402, 989, 1031
Bsp1286I GDGCHC 2 cut(s) 725, 1121
Bsp143I GATC 8 cut(s) 163, 175, 276, 283, 496, 564, 610, 928
Bsp19I CCATGG 1 cut(s) 104
BspACI CCGC 2 cut(s) 672, 1139
BspANI GGCC 5 cut(s) 95, 141, 363, 526, 921
BspCNI CTCAG 3 cut(s) 456, 547, 1113
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 102, 845
BspMAI CTGCAG 1 cut(s) 188
BspPI GGATC 3 cut(s) 278, 284, 618
BspTNI GGTCTC 1 cut(s) 749
BsrI ACTGG 5 cut(s) 534, 710, 882, 1080, 1121
BssECI CCNNGG 7 cut(s) 9, 96, 104, 791, 847, 990, 1032
BssMI GATC 8 cut(s) 163, 175, 276, 283, 496, 564, 610, 928
BssNI GRCGYC 1 cut(s) 398
BssT1I CCWWGG 3 cut(s) 9, 96, 104
Bst4CI ACNGT 4 cut(s) 389, 423, 588, 848
Bst6I CTCTTC 1 cut(s) 402
BstACI GRCGYC 1 cut(s) 398
BstBAI YACGTR 2 cut(s) 376, 1116
BstC8I GCNNGC 2 cut(s) 299, 670
BstDEI CTNAG 5 cut(s) 131, 303, 443, 534, 1100
BstDSI CCRYGG 2 cut(s) 104, 847
BstENI CCTNNNNNAGG 1 cut(s) 838
BstKTI GATC 8 cut(s) 166, 178, 279, 286, 499, 567, 613, 931
BstMAI GTCTC 4 cut(s) 225, 749, 1166, 1169
BstMBI GATC 8 cut(s) 163, 175, 276, 283, 496, 564, 610, 928
BstMWI GCNNNNNNNGC 3 cut(s) 307, 369, 669
BstNSI RCATGY 1 cut(s) 646
BstPAI GACNNNNGTC 2 cut(s) 327, 849
BstSCI CCNGG 2 cut(s) 286, 790
BstSFI CTRYAG 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 1121
BstV1I GCAGC 2 cut(s) 198, 281
BstV2I GAAGAC 2 cut(s) 417, 959
BstX2I RGATCY 1 cut(s) 610
BstYI RGATCY 1 cut(s) 610
BsuRI GGCC 5 cut(s) 95, 141, 363, 526, 921
BtgI CCRYGG 2 cut(s) 104, 847
BtsIMutI CAGTG 3 cut(s) 527, 584, 889
Cac8I GCNNGC 2 cut(s) 299, 670
CciI TCATGA 1 cut(s) 76
Cfr13I GGNCC 3 cut(s) 316, 844, 919
Csp6I GTAC 2 cut(s) 110, 1024
CviAII CATG 9 cut(s) 77, 105, 313, 320, 636, 643, 905, 1076, 1179
CviQI GTAC 2 cut(s) 110, 1024
DdeI CTNAG 5 cut(s) 131, 303, 443, 534, 1100
DpnI GATC 8 cut(s) 165, 177, 278, 285, 498, 566, 612, 930
DpnII GATC 8 cut(s) 163, 175, 276, 283, 496, 564, 610, 928
DrdI GACNNNNNNGTC 1 cut(s) 461
DseDI GACNNNNNNGTC 1 cut(s) 461
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco130I CCWWGG 3 cut(s) 9, 96, 104
Eco31I GGTCTC 1 cut(s) 749
Eco47I GGWCC 2 cut(s) 316, 844
Eco57I CTGAAG 1 cut(s) 310
Eco88I CYCGRG 3 cut(s) 402, 989, 1031
EcoNI CCTNNNNNAGG 1 cut(s) 838
EcoT14I CCWWGG 3 cut(s) 9, 96, 104
ErhI CCWWGG 3 cut(s) 9, 96, 104
FaeI CATG 9 cut(s) 80, 108, 316, 323, 639, 646, 908, 1079, 1182
FaqI GGGAC 4 cut(s) 385, 653, 857, 972
FatI CATG 9 cut(s) 76, 104, 312, 319, 635, 642, 904, 1075, 1178
FauI CCCGC 1 cut(s) 665
FauNDI CATATG 1 cut(s) 272
FblI GTMKAC 2 cut(s) 395, 479
Fnu4HI GCNGC 2 cut(s) 187, 295
Fsp4HI GCNGC 2 cut(s) 187, 295
FspBI CTAG 2 cut(s) 416, 797
GluI GCNGC 2 cut(s) 187, 295
HaeIII GGCC 5 cut(s) 95, 141, 363, 526, 921
HapII CCGG 3 cut(s) 288, 766, 791
Hin1I GRCGYC 1 cut(s) 398
Hin1II CATG 9 cut(s) 80, 108, 316, 323, 639, 646, 908, 1079, 1182
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 8 cut(s) 55, 114, 338, 580, 901, 941, 955, 1108
HpaII CCGG 3 cut(s) 288, 766, 791
HphI GGTGA 3 cut(s) 16, 333, 420
Hpy166II GTNNAC 3 cut(s) 337, 396, 480
Hpy188I TCNGA 4 cut(s) 54, 537, 951, 1103
Hpy188III TCNNGA 6 cut(s) 77, 228, 241, 402, 726, 989
Hpy8I GTNNAC 3 cut(s) 337, 396, 480
Hpy99I CGWCG 3 cut(s) 284, 397, 400
HpyAV CCTTC 4 cut(s) 37, 131, 238, 355
HpyCH4III ACNGT 4 cut(s) 389, 423, 588, 848
HpyCH4IV ACGT 4 cut(s) 375, 398, 780, 1115
HpyCH4V TGCA 6 cut(s) 90, 186, 475, 804, 1062, 1086
HpyF10VI GCNNNNNNNGC 3 cut(s) 307, 369, 669
HpyF3I CTNAG 5 cut(s) 131, 303, 443, 534, 1100
HpySE526I ACGT 4 cut(s) 375, 398, 780, 1115
Hsp92I GRCGYC 1 cut(s) 398
Hsp92II CATG 9 cut(s) 80, 108, 316, 323, 639, 646, 908, 1079, 1182
Kzo9I GATC 8 cut(s) 163, 175, 276, 283, 496, 564, 610, 928
Lsp1109I GCAGC 2 cut(s) 198, 281
LweI GCATC 3 cut(s) 77, 813, 864
MaeI CTAG 2 cut(s) 416, 797
MaeII ACGT 4 cut(s) 375, 398, 780, 1115
MaeIII GTNAC 2 cut(s) 768, 886
MalI GATC 8 cut(s) 165, 177, 278, 285, 498, 566, 612, 930
MboI GATC 8 cut(s) 163, 175, 276, 283, 496, 564, 610, 928
MboII GAAGA 4 cut(s) 216, 417, 419, 964
MfeI CAATTG 2 cut(s) 432, 1170
MflI RGATCY 1 cut(s) 610
MhlI GDGCHC 2 cut(s) 725, 1121
MluCI AATT 5 cut(s) 432, 736, 875, 977, 1170
MlyI GAGTC 2 cut(s) 332, 949
MseI TTAA 4 cut(s) 501, 615, 836, 924
MslI CAYNNNNRTG 4 cut(s) 470, 575, 809, 1074
MspI CCGG 3 cut(s) 288, 766, 791
MspR9I CCNGG 2 cut(s) 288, 792
MunI CAATTG 2 cut(s) 432, 1170
Mva1269I GAATGC 1 cut(s) 1064
MwoI GCNNNNNNNGC 3 cut(s) 307, 369, 669
NciI CCSGG 2 cut(s) 288, 792
NcoI CCATGG 1 cut(s) 104
NdeI CATATG 1 cut(s) 272
NdeII GATC 8 cut(s) 163, 175, 276, 283, 496, 564, 610, 928
NlaIII CATG 9 cut(s) 80, 108, 316, 323, 639, 646, 908, 1079, 1182
NlaIV GGNNCC 2 cut(s) 102, 845
NmuCI GTSAC 1 cut(s) 886
NspI RCATGY 1 cut(s) 646
PagI TCATGA 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PctI GAATGC 1 cut(s) 1064
PfeI GAWTC 6 cut(s) 55, 114, 580, 901, 941, 1108
PflMI CCANNNNNTGG 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 286
PkrI GCNGC 2 cut(s) 188, 296
PleI GAGTC 2 cut(s) 332, 949
PpsI GAGTC 2 cut(s) 332, 949
Ppu21I YACGTR 2 cut(s) 376, 1116
PshAI GACNNNNGTC 2 cut(s) 327, 849
PsiI TTATAA 1 cut(s) 914
PspN4I GGNNCC 2 cut(s) 102, 845
PspPI GGNCC 3 cut(s) 316, 844, 919
PsrI GAACNNNNNNTAC 2 cut(s) 93, 125
PstI CTGCAG 1 cut(s) 188
PsuI RGATCY 1 cut(s) 610
RsaI GTAC 2 cut(s) 111, 1025
RsaNI GTAC 2 cut(s) 110, 1024
RseI CAYNNNNRTG 4 cut(s) 470, 575, 809, 1074
SalI GTCGAC 1 cut(s) 394
SaqAI TTAA 4 cut(s) 501, 615, 836, 924
SatI GCNGC 2 cut(s) 187, 295
Sau3AI GATC 8 cut(s) 163, 175, 276, 283, 496, 564, 610, 928
Sau96I GGNCC 3 cut(s) 316, 844, 919
SchI GAGTC 2 cut(s) 332, 949
ScrFI CCNGG 2 cut(s) 288, 792
SduI GDGCHC 2 cut(s) 725, 1121
SfaNI GCATC 3 cut(s) 77, 813, 864
SfcI CTRYAG 1 cut(s) 184
SgrDI CGTCGACG 1 cut(s) 394
SinI GGWCC 2 cut(s) 316, 844
SmiMI CAYNNNNRTG 4 cut(s) 470, 575, 809, 1074
Sse9I AATT 5 cut(s) 432, 736, 875, 977, 1170
SsiI CCGC 2 cut(s) 672, 1139
SspMI CTAG 2 cut(s) 416, 797
StyD4I CCNGG 2 cut(s) 286, 790
StyI CCWWGG 3 cut(s) 9, 96, 104
TaaI ACNGT 4 cut(s) 389, 423, 588, 848
TaiI ACGT 4 cut(s) 378, 401, 783, 1118
TaqI TCGA 8 cut(s) 166, 227, 261, 279, 366, 395, 521, 1129
TasI AATT 5 cut(s) 432, 736, 875, 977, 1170
TfiI GAWTC 6 cut(s) 55, 114, 580, 901, 941, 1108
Tru1I TTAA 4 cut(s) 501, 615, 836, 924
Tru9I TTAA 4 cut(s) 501, 615, 836, 924
TscAI CASTG 3 cut(s) 534, 591, 889
TseFI GTSAC 1 cut(s) 886
TseI GCWGC 2 cut(s) 186, 294
Tsp45I GTSAC 1 cut(s) 886
TspDTI ATGAA 7 cut(s) 93, 226, 507, 585, 876, 893, 1064
TspGWI ACGGA 1 cut(s) 550
TspRI CASTG 3 cut(s) 534, 591, 889
Van91I CCANNNNNTGG 1 cut(s) 148
VpaK11BI GGWCC 2 cut(s) 316, 844
XagI CCTNNNNNAGG 1 cut(s) 838
XapI RAATTY 2 cut(s) 736, 977
XceI RCATGY 1 cut(s) 646
XmiI GTMKAC 2 cut(s) 395, 479
XspI CTAG 2 cut(s) 416, 797
ZraI GACGTC 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.