Rmu_co8348513.1_g000001

UDP-glucoronosyl and UDP-glucosyl transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8348513.1
OG0000465
Physical Location & Seq
Reverse (-)
2 .. 640
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8348513.1_g000001.1.cds

Sequence Viewer

Length: 639 bp
atggctaacgagatatggatcattccgttttttggtcagggccatttgttcccttcaatggagctctgcaagcatttggcctccagaaacttcaaagccgttatggttatctcttccaaagtctcctcctccgtaccctcatctctccgccaacacccactcgtcgaaatcgctgaggtttctgaaacctcaccatctgattcttctcctccgccgcagaagccgagttctcagccacttcaccgccaccacgcacaccacagccagatagcagtcgggcttgagaaactcctccatgatccggattcagtccgacccctttatgcggttgttgacatgaagatgagctggactttcgagattttcaacagatatgaaattccggcagtcagcttcttcacctccggtgcttgctccgccgccatggagtatgccatgtggaaggcccaacctttagatatcaaagctggtgagactcgctcactacccgggttaccccaagaaatggctattacggtttcagatctcaagcggcagagatttcctcctgaaccacctcgaaaaaagtttggggcggagagacatcacccaaccaatcccggtgataaaccaccgtggctagaagaaatcgagccgtgt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

213

Amino Acids

23.89

Weight (kDa)

6.83

Isoelectric Point (pI)

63.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48790 AT5G48790 AT5G48790
fragaria_vesca FvH4_5g23760 FvH4_5g23760 FvH4_5g23770 FvH4_5g23771 FvH4_5g23790 FvH4_5g23800 FvH4_7g03421 FvH4_7g07510
malus_domestica MD00G1000600.v1.1 MD06G1013900.v1.1
prunus_persica Prupe.2G101800_v2.0.a1 Prupe.5G022600_v2.0.a1 Prupe.5G022700_v2.0.a1
pyrus_communis pycom07g06280 pycom16g25400
rosa_chinensis RchiOBHm_Chr1g0337881 RchiOBHm_Chr1g0339341 RchiOBHm_Chr7g0213081 RchiOBHm_Chr7g0213111 RchiOBHm_Chr7g0213141 RchiOBHm_Chr7g0213151 RchiOBHm_Chr7g0213161 RchiOBHm_Chr7g0213181
rosa_laevigata RLG00000002825 RLG00000002828 RLG00000002829 RLG00000002832 RLG00000029226
rosa_multiflora Rmu_co8345885.1_g000002 Rmu_co8348513.1_g000001 Rmu_co8456259.1_g000001 Rmu_sc0000613.1_g000002 Rmu_sc0001121.1_g000005 Rmu_sc0001121.1_g000006 Rmu_sc0002989.1_g000003 Rmu_sc0015110.1_g000001 Rmu_sc0030208.1_g000001 Rmu_sc0030209.1_g000001 Rmu_sc0032877.1_g000001 Rmu_sc0039394.1_g000001 Rmu_ssc0000084.1_g000002 Rmu_ssc0000084.1_g000007 Rmu_ssc0000084.1_g000009 Rmu_ssc0000084.1_g000012
rosa_roxburghii Rroxscaffold_3G00246200 Rroxscaffold_3G00246210 Rroxscaffold_3G00246240 Rroxscaffold_3G00246250 Rroxscaffold_4G00313440
rosa_rugosa Rorug01G0142600.1 Rorug07G0139400 Rorug07G0139500 Rorug07G0139600 Rorug07G0139700.1 Rorug07G0139800 Rorug07G0140100
rosa_samantha Rh1AG159300 Rh1BG126400 Rh1CG148500 Rh7AG270700 Rh7AG270800 Rh7AG271200 Rh7AG271400 Rh7AG271500 Rh7BG266400 Rh7BG266600 Rh7BG267000 Rh7BG267100 Rh7BG267200 Rh7BG267400 Rh7CG290000 Rh7CG290100 Rh7CG290600 Rh7CG290700 Rh7CG290800 Rh7DG278900 Rh7DG279200 Rh7DG279300 Rh7DG279400 Rh7DG279500 Rh7DG279600
rosa_wichuraiana Rw1G013550 Rw7G023520 Rw7G023530 Rw7G023540 Rw7G023550 Rw7G023560 Rw7G023580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 505
AccIII TCCGGA 1 cut(s) 301
AciI CCGC 9 cut(s) 148, 212, 215, 244, 326, 417, 420, 532, 575
AclWI GGATC 2 cut(s) 26, 293
AcsI RAATTY 1 cut(s) 378
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 5 cut(s) 32, 58, 301, 325, 505
AgsI TTSAA 3 cut(s) 57, 94, 367
AluBI AGCT 4 cut(s) 64, 348, 393, 467
AluI AGCT 4 cut(s) 64, 348, 393, 467
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 3 cut(s) 127, 467, 574
AlwI GGATC 2 cut(s) 26, 293
Ama87I CYCGRG 1 cut(s) 488
Aor13HI TCCGGA 1 cut(s) 301
AoxI GGCC 3 cut(s) 40, 78, 444
ApoI RAATTY 1 cut(s) 378
AspS9I GGNCC 2 cut(s) 40, 445
AsuC2I CCSGG 3 cut(s) 489, 490, 600
AsuHPI GGTGA 6 cut(s) 183, 233, 391, 482, 578, 614
AvaI CYCGRG 1 cut(s) 488
BanII GRGCYC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 66
BbvCI CCTCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 202
BceAI ACGGC 2 cut(s) 83, 619
BcnI CCSGG 3 cut(s) 489, 490, 600
BcoDI GTCTC 3 cut(s) 127, 467, 574
BfaI CTAG 1 cut(s) 620
BglII AGATCT 1 cut(s) 523
BisI GCNGC 3 cut(s) 215, 420, 533
BlsI GCNGC 3 cut(s) 216, 421, 534
Bme1390I CCNGG 3 cut(s) 489, 490, 600
BmeT110I CYCGRG 1 cut(s) 488
BmgT120I GGNCC 2 cut(s) 40, 445
BmrFI CCNGG 3 cut(s) 489, 490, 600
BplI GAGNNNNNCTC 4 cut(s) 464, 496, 529, 561
BpmI CTGGAG 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 174
BpuEI CTTGAG 2 cut(s) 302, 512
BpuMI CCSGG 3 cut(s) 489, 490, 600
BsaBI GATNNNNATC 1 cut(s) 17
BsaJI CCNNGG 3 cut(s) 423, 488, 614
BsaWI WCCGGW 2 cut(s) 301, 404
Bsc4I CCNNNNNNNGG 5 cut(s) 32, 58, 301, 325, 505
Bse8I GATNNNNATC 1 cut(s) 17
BseAI TCCGGA 1 cut(s) 301
BseDI CCNNGG 3 cut(s) 423, 488, 614
BseJI GATNNNNATC 1 cut(s) 17
BseLI CCNNNNNNNGG 5 cut(s) 32, 58, 301, 325, 505
BseMII CTCAG 2 cut(s) 165, 245
BseRI GAGGAG 4 cut(s) 115, 118, 198, 281
BshFI GGCC 3 cut(s) 42, 80, 446
BsiHKAI GWGCWC 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 488
BsiSI CCGG 5 cut(s) 302, 383, 405, 489, 600
BslI CCNNNNNNNGG 5 cut(s) 32, 58, 301, 325, 505
BsmAI GTCTC 3 cut(s) 127, 467, 574
BsnI GGCC 3 cut(s) 42, 80, 446
BsoBI CYCGRG 1 cut(s) 488
Bsp1286I GDGCHC 1 cut(s) 66
Bsp13I TCCGGA 1 cut(s) 301
Bsp143I GATC 3 cut(s) 18, 298, 523
Bsp19I CCATGG 1 cut(s) 423
BspACI CCGC 9 cut(s) 148, 212, 215, 244, 326, 417, 420, 532, 575
BspANI GGCC 3 cut(s) 42, 80, 446
BspCNI CTCAG 2 cut(s) 166, 244
BspEI TCCGGA 1 cut(s) 301
BspPI GGATC 2 cut(s) 26, 293
BssECI CCNNGG 3 cut(s) 423, 488, 614
BssMI GATC 3 cut(s) 18, 298, 523
BssT1I CCWWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 517, 615
Bst6I CTCTTC 1 cut(s) 118
BstC8I GCNNGC 2 cut(s) 71, 412
BstDEI CTNAG 2 cut(s) 174, 231
BstDSI CCRYGG 2 cut(s) 423, 614
BstEII GGTNACC 1 cut(s) 492
BstKTI GATC 3 cut(s) 21, 301, 526
BstMAI GTCTC 3 cut(s) 127, 467, 574
BstMBI GATC 3 cut(s) 18, 298, 523
BstMWI GCNNNNNNNGC 3 cut(s) 70, 220, 416
BstPI GGTNACC 1 cut(s) 492
BstSCI CCNGG 3 cut(s) 487, 488, 598
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
BsuRI GGCC 3 cut(s) 42, 80, 446
BtgI CCRYGG 2 cut(s) 423, 614
Cac8I GCNNGC 2 cut(s) 71, 412
Cfr13I GGNCC 2 cut(s) 40, 445
Cfr9I CCCGGG 1 cut(s) 488
Csp6I GTAC 1 cut(s) 134
CviAII CATG 4 cut(s) 296, 337, 424, 436
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 2 cut(s) 174, 231
DpnI GATC 3 cut(s) 20, 300, 525
DpnII GATC 3 cut(s) 18, 298, 523
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
EciI GGCGGA 4 cut(s) 137, 201, 406, 590
Ecl136II GAGCTC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 423
Eco24I GRGCYC 1 cut(s) 66
Eco32I GATATC 1 cut(s) 460
Eco53kI GAGCTC 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 488
Eco91I GGTNACC 1 cut(s) 492
EcoICRI GAGCTC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 492
EcoRV GATATC 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 423
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 4 cut(s) 299, 340, 427, 439
FaiI YATR 9 cut(s) 16, 104, 297, 324, 338, 375, 425, 432, 437
FatI CATG 4 cut(s) 295, 336, 423, 435
Fnu4HI GCNGC 3 cut(s) 215, 420, 533
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 3 cut(s) 215, 420, 533
FspBI CTAG 1 cut(s) 620
GluI GCNGC 3 cut(s) 215, 420, 533
GsuI CTGGAG 1 cut(s) 67
HaeIII GGCC 3 cut(s) 42, 80, 446
HapII CCGG 5 cut(s) 302, 383, 405, 489, 600
Hin1II CATG 4 cut(s) 299, 340, 427, 439
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 3 cut(s) 200, 305, 475
HpaII CCGG 5 cut(s) 302, 383, 405, 489, 600
HphI GGTGA 6 cut(s) 183, 233, 391, 482, 578, 614
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 4 cut(s) 184, 199, 314, 523
Hpy188III TCNNGA 4 cut(s) 84, 302, 358, 548
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 63, 436
HpyCH4III ACNGT 2 cut(s) 517, 615
HpyCH4V TGCA 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 220, 416
HpyF3I CTNAG 2 cut(s) 174, 231
Hsp92II CATG 4 cut(s) 299, 340, 427, 439
Kpn2I TCCGGA 1 cut(s) 301
Kzo9I GATC 3 cut(s) 18, 298, 523
LmnI GCTCC 2 cut(s) 61, 419
MaeI CTAG 1 cut(s) 620
MaeIII GTNAC 1 cut(s) 492
MalI GATC 3 cut(s) 20, 300, 525
MboI GATC 3 cut(s) 18, 298, 523
MboII GAAGA 5 cut(s) 105, 195, 352, 388, 635
MflI RGATCY 1 cut(s) 523
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 1 cut(s) 378
MlyI GAGTC 1 cut(s) 469
MmeI TCCRAC 1 cut(s) 337
MroI TCCGGA 1 cut(s) 301
MslI CAYNNNNRTG 1 cut(s) 341
MspI CCGG 5 cut(s) 302, 383, 405, 489, 600
MspR9I CCNGG 3 cut(s) 489, 490, 600
MwoI GCNNNNNNNGC 3 cut(s) 70, 220, 416
NciI CCSGG 3 cut(s) 489, 490, 600
NcoI CCATGG 1 cut(s) 423
NdeII GATC 3 cut(s) 18, 298, 523
NlaIII CATG 4 cut(s) 299, 340, 427, 439
NmeAIII GCCGAG 1 cut(s) 249
PfeI GAWTC 2 cut(s) 200, 305
PflMI CCANNNNNTGG 1 cut(s) 505
PkrI GCNGC 3 cut(s) 216, 421, 534
PleI GAGTC 1 cut(s) 469
PpsI GAGTC 1 cut(s) 469
Psp124BI GAGCTC 1 cut(s) 66
PspEI GGTNACC 1 cut(s) 492
PspPI GGNCC 2 cut(s) 40, 445
PsuI RGATCY 1 cut(s) 523
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 341
SacI GAGCTC 1 cut(s) 66
SatI GCNGC 3 cut(s) 215, 420, 533
Sau3AI GATC 3 cut(s) 18, 298, 523
Sau96I GGNCC 2 cut(s) 40, 445
SchI GAGTC 1 cut(s) 469
ScrFI CCNGG 3 cut(s) 489, 490, 600
SduI GDGCHC 1 cut(s) 66
SetI ASST 9 cut(s) 66, 180, 191, 350, 395, 404, 454, 469, 559
SmaI CCCGGG 1 cut(s) 490
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 2 cut(s) 281, 527
SmoI CTYRAG 2 cut(s) 281, 527
Sse9I AATT 1 cut(s) 378
SsiI CCGC 9 cut(s) 148, 212, 215, 244, 326, 417, 420, 532, 575
SspMI CTAG 1 cut(s) 620
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 3 cut(s) 487, 488, 598
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 2 cut(s) 517, 615
TaqI TCGA 4 cut(s) 165, 357, 559, 630
TasI AATT 1 cut(s) 378
TauI GCSGC 3 cut(s) 217, 422, 535
TfiI GAWTC 2 cut(s) 200, 305
TspDTI ATGAA 2 cut(s) 353, 390
TspGWI ACGGA 2 cut(s) 15, 121
TspMI CCCGGG 1 cut(s) 488
Van91I CCANNNNNTGG 1 cut(s) 505
XapI RAATTY 1 cut(s) 378
XmaI CCCGGG 1 cut(s) 488
XspI CTAG 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.