regulation of response to stimulus
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G49750 |
| fragaria_vesca | FvH4_6g08970 FvH4_6g09001 |
| prunus_persica | Prupe.6G301700_v2.0.a1 |
| rosa_laevigata | RLG00000025099 |
| rosa_multiflora | Rmu_co8402051.1_g000001 Rmu_sc0002435.1_g000001 Rmu_sc0010702.1_g000004 Rmu_sc0022643.1_g000002 Rmu_sc0035588.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00241190 Rroxscaffold_6G00420360 Rroxscaffold_6G00420370 |
| rosa_rugosa | Rorug03G0034500 Rorug03G0034500 Rorug03G0034600 Rorug03G0034700 Rorug03G0034800 |
| rosa_samantha | Rh2AG320500 Rh3AG092500 Rh3AG092600 Rh3BG095700 Rh3CG096500 Rh3CG096700 Rh3DG096200 Rh3DG096300 Rh4AG031900 |
| rosa_wichuraiana | Rw3G007950 Rw3G007960 Rw6G021920 Rw7G026850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 593, 1302, 1458 |
| Acc65I | GGTACC | 1 cut(s) | 1241 |
| AccB1I | GGYRCC | 1 cut(s) | 1241 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 400, 1355 |
| AccI | GTMKAC | 1 cut(s) | 40 |
| AccII | CGCG | 1 cut(s) | 369 |
| AciI | CCGC | 3 cut(s) | 330, 367, 1210 |
| AclI | AACGTT | 1 cut(s) | 899 |
| AclWI | GGATC | 5 cut(s) | 523, 583, 1106, 1135, 1148 |
| AcoI | YGGCCR | 1 cut(s) | 1473 |
| AcsI | RAATTY | 7 cut(s) | 13, 523, 607, 617, 1001, 1021, 1076 |
| AcuI | CTGAAG | 1 cut(s) | 1159 |
| AfaI | GTAC | 4 cut(s) | 90, 358, 840, 1243 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 400, 648, 1355 |
| AflII | CTTAAG | 2 cut(s) | 509, 1205 |
| AflIII | ACRYGT | 3 cut(s) | 43, 353, 835 |
| AgsI | TTSAA | 8 cut(s) | 12, 52, 180, 466, 607, 695, 814, 847 |
| AhlI | ACTAGT | 1 cut(s) | 385 |
| AjnI | CCWGG | 3 cut(s) | 56, 293, 730 |
| AluBI | AGCT | 5 cut(s) | 680, 703, 784, 808, 1313 |
| AluI | AGCT | 5 cut(s) | 680, 703, 784, 808, 1313 |
| Alw26I | GTCTC | 2 cut(s) | 303, 977 |
| AlwI | GGATC | 5 cut(s) | 523, 583, 1106, 1135, 1148 |
| AoxI | GGCC | 2 cut(s) | 790, 1473 |
| ApeKI | GCWGC | 1 cut(s) | 1310 |
| ApoI | RAATTY | 7 cut(s) | 13, 523, 607, 617, 1001, 1021, 1076 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 152, 412 |
| Asp718I | GGTACC | 1 cut(s) | 1241 |
| AspS9I | GGNCC | 4 cut(s) | 291, 482, 790, 1154 |
| AsuC2I | CCSGG | 1 cut(s) | 635 |
| AsuHPI | GGTGA | 2 cut(s) | 515, 720 |
| AvaII | GGWCC | 3 cut(s) | 291, 482, 1154 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1225, 1258 |
| BamHI | GGATCC | 1 cut(s) | 1140 |
| BanI | GGYRCC | 1 cut(s) | 1241 |
| BbsI | GAAGAC | 1 cut(s) | 1007 |
| BbvCI | CCTCAGC | 1 cut(s) | 884 |
| BbvI | GCAGC | 1 cut(s) | 1322 |
| BccI | CCATC | 3 cut(s) | 499, 1099, 1126 |
| BceAI | ACGGC | 1 cut(s) | 1460 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 245, 279 |
| BciT130I | CCWGG | 3 cut(s) | 58, 295, 732 |
| BcnI | CCSGG | 1 cut(s) | 635 |
| BcoDI | GTCTC | 2 cut(s) | 303, 977 |
| BcuI | ACTAGT | 1 cut(s) | 385 |
| BfaI | CTAG | 3 cut(s) | 386, 581, 662 |
| BfmI | CTRYAG | 2 cut(s) | 570, 1249 |
| BfrI | CTTAAG | 2 cut(s) | 509, 1205 |
| BglII | AGATCT | 1 cut(s) | 1435 |
| BisI | GCNGC | 1 cut(s) | 1311 |
| BlpI | GCTNAGC | 1 cut(s) | 1387 |
| BlsI | GCNGC | 1 cut(s) | 1312 |
| Bme1390I | CCNGG | 4 cut(s) | 58, 295, 635, 732 |
| Bme18I | GGWCC | 3 cut(s) | 291, 482, 1154 |
| BmgT120I | GGNCC | 4 cut(s) | 291, 482, 790, 1154 |
| BmiI | GGNNCC | 4 cut(s) | 334, 1142, 1228, 1243 |
| BmrFI | CCNGG | 4 cut(s) | 58, 295, 635, 732 |
| BmsI | GCATC | 1 cut(s) | 647 |
| BoxI | GACNNNNGTC | 1 cut(s) | 652 |
| BpiI | GAAGAC | 1 cut(s) | 1007 |
| Bpu10I | CCTNAGC | 1 cut(s) | 884 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1387 |
| BpuMI | CCSGG | 1 cut(s) | 635 |
| Bsa29I | ATCGAT | 1 cut(s) | 928 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1192 |
| BsaI | GGTCTC | 1 cut(s) | 303 |
| BsaJI | CCNNGG | 1 cut(s) | 1230 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 283, 313 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 400, 648, 1355 |
| Bse1I | ACTGG | 5 cut(s) | 484, 1029, 1157, 1300, 1349 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1192 |
| BseBI | CCWGG | 3 cut(s) | 58, 295, 732 |
| BseCI | ATCGAT | 1 cut(s) | 928 |
| BseDI | CCNNGG | 1 cut(s) | 1230 |
| BseGI | GGATG | 4 cut(s) | 491, 545, 638, 1137 |
| BseJI | GATNNNNATC | 1 cut(s) | 1192 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 400, 648, 1355 |
| BseMII | CTCAG | 5 cut(s) | 408, 672, 770, 898, 1401 |
| BseNI | ACTGG | 5 cut(s) | 484, 1029, 1157, 1300, 1349 |
| BseXI | GCAGC | 1 cut(s) | 1322 |
| BsgI | GTGCAG | 2 cut(s) | 222, 968 |
| Bsh1236I | CGCG | 1 cut(s) | 369 |
| BshFI | GGCC | 2 cut(s) | 792, 1475 |
| BshNI | GGYRCC | 1 cut(s) | 1241 |
| BshVI | ATCGAT | 1 cut(s) | 928 |
| BsiSI | CCGG | 1 cut(s) | 635 |
| BslFI | GGGAC | 1 cut(s) | 733 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 400, 648, 1355 |
| BsmAI | GTCTC | 2 cut(s) | 303, 977 |
| BsmFI | GGGAC | 1 cut(s) | 733 |
| BsnI | GGCC | 2 cut(s) | 792, 1475 |
| Bso31I | GGTCTC | 1 cut(s) | 303 |
| Bsp1407I | TGTACA | 1 cut(s) | 88 |
| Bsp143I | GATC | 8 cut(s) | 110, 204, 528, 575, 1039, 1098, 1140, 1435 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1387 |
| BspACI | CCGC | 3 cut(s) | 330, 367, 1210 |
| BspANI | GGCC | 2 cut(s) | 792, 1475 |
| BspCNI | CTCAG | 5 cut(s) | 409, 673, 769, 897, 1400 |
| BspDI | ATCGAT | 1 cut(s) | 928 |
| BspFNI | CGCG | 1 cut(s) | 369 |
| BspLI | GGNNCC | 4 cut(s) | 334, 1142, 1228, 1243 |
| BspPI | GGATC | 5 cut(s) | 523, 583, 1106, 1135, 1148 |
| BspQI | GCTCTTC | 1 cut(s) | 815 |
| BspT107I | GGYRCC | 1 cut(s) | 1241 |
| BspTI | CTTAAG | 2 cut(s) | 509, 1205 |
| BspTNI | GGTCTC | 1 cut(s) | 303 |
| BsrGI | TGTACA | 1 cut(s) | 88 |
| BsrI | ACTGG | 5 cut(s) | 484, 1029, 1157, 1300, 1349 |
| BssECI | CCNNGG | 1 cut(s) | 1230 |
| BssMI | GATC | 8 cut(s) | 110, 204, 528, 575, 1039, 1098, 1140, 1435 |
| BssT1I | CCWWGG | 1 cut(s) | 1230 |
| Bst2UI | CCWGG | 3 cut(s) | 58, 295, 732 |
| Bst4CI | ACNGT | 3 cut(s) | 651, 1260, 1403 |
| Bst6I | CTCTTC | 2 cut(s) | 143, 815 |
| BstAFI | CTTAAG | 2 cut(s) | 509, 1205 |
| BstAUI | TGTACA | 1 cut(s) | 88 |
| BstDEI | CTNAG | 7 cut(s) | 417, 451, 548, 681, 756, 884, 1387 |
| BstEII | GGTNACC | 1 cut(s) | 503 |
| BstF5I | GGATG | 4 cut(s) | 491, 545, 638, 1137 |
| BstFNI | CGCG | 1 cut(s) | 369 |
| BstKTI | GATC | 8 cut(s) | 113, 207, 531, 578, 1042, 1101, 1143, 1438 |
| BstMAI | GTCTC | 2 cut(s) | 303, 977 |
| BstMBI | GATC | 8 cut(s) | 110, 204, 528, 575, 1039, 1098, 1140, 1435 |
| BstNI | CCWGG | 3 cut(s) | 58, 295, 732 |
| BstNSI | RCATGY | 4 cut(s) | 47, 357, 745, 839 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 652 |
| BstPI | GGTNACC | 1 cut(s) | 503 |
| BstSCI | CCNGG | 4 cut(s) | 56, 293, 633, 730 |
| BstSFI | CTRYAG | 2 cut(s) | 570, 1249 |
| BstUI | CGCG | 1 cut(s) | 369 |
| BstV1I | GCAGC | 1 cut(s) | 1322 |
| BstV2I | GAAGAC | 1 cut(s) | 1007 |
| BstX2I | RGATCY | 3 cut(s) | 575, 1140, 1435 |
| BstYI | RGATCY | 3 cut(s) | 575, 1140, 1435 |
| Bsu15I | ATCGAT | 1 cut(s) | 928 |
| BsuRI | GGCC | 2 cut(s) | 792, 1475 |
| BsuTUI | ATCGAT | 1 cut(s) | 928 |
| BtsCI | GGATG | 4 cut(s) | 491, 545, 638, 1137 |
| BtsIMutI | CAGTG | 2 cut(s) | 1164, 1356 |
| Cfr13I | GGNCC | 4 cut(s) | 291, 482, 790, 1154 |
| ClaI | ATCGAT | 1 cut(s) | 928 |
| CseI | GACGC | 2 cut(s) | 266, 358 |
| CsiI | ACCWGGT | 1 cut(s) | 293 |
| Csp6I | GTAC | 4 cut(s) | 89, 357, 839, 1242 |
| CviAII | CATG | 6 cut(s) | 44, 354, 742, 823, 836, 1095 |
| CviQI | GTAC | 4 cut(s) | 89, 357, 839, 1242 |
| DdeI | CTNAG | 7 cut(s) | 417, 451, 548, 681, 756, 884, 1387 |
| DpnI | GATC | 8 cut(s) | 112, 206, 530, 577, 1041, 1100, 1142, 1437 |
| DpnII | GATC | 8 cut(s) | 110, 204, 528, 575, 1039, 1098, 1140, 1435 |
| DraI | TTTAAA | 1 cut(s) | 612 |
| EaeI | YGGCCR | 1 cut(s) | 1473 |
| Eam1104I | CTCTTC | 2 cut(s) | 143, 815 |
| EarI | CTCTTC | 2 cut(s) | 143, 815 |
| Eco130I | CCWWGG | 1 cut(s) | 1230 |
| Eco31I | GGTCTC | 1 cut(s) | 303 |
| Eco47I | GGWCC | 3 cut(s) | 291, 482, 1154 |
| Eco57I | CTGAAG | 1 cut(s) | 1159 |
| Eco91I | GGTNACC | 1 cut(s) | 503 |
| EcoO65I | GGTNACC | 1 cut(s) | 503 |
| EcoRI | GAATTC | 1 cut(s) | 1076 |
| EcoRII | CCWGG | 3 cut(s) | 56, 293, 730 |
| EcoT14I | CCWWGG | 1 cut(s) | 1230 |
| ErhI | CCWWGG | 1 cut(s) | 1230 |
| FaeI | CATG | 6 cut(s) | 47, 357, 745, 826, 839, 1098 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 140, 172, 396, 428, 687, 719 |
| FaqI | GGGAC | 1 cut(s) | 733 |
| FatI | CATG | 6 cut(s) | 43, 353, 741, 822, 835, 1094 |
| FblI | GTMKAC | 1 cut(s) | 40 |
| Fnu4HI | GCNGC | 1 cut(s) | 1311 |
| FokI | GGATG | 4 cut(s) | 478, 552, 625, 1144 |
| Fsp4HI | GCNGC | 1 cut(s) | 1311 |
| FspBI | CTAG | 3 cut(s) | 386, 581, 662 |
| GluI | GCNGC | 1 cut(s) | 1311 |
| HaeIII | GGCC | 2 cut(s) | 792, 1475 |
| HapII | CCGG | 1 cut(s) | 635 |
| HgaI | GACGC | 2 cut(s) | 266, 358 |
| Hin1II | CATG | 6 cut(s) | 47, 357, 745, 826, 839, 1098 |
| HincII | GTYRAC | 2 cut(s) | 391, 1201 |
| HindII | GTYRAC | 2 cut(s) | 391, 1201 |
| HindIII | AAGCTT | 1 cut(s) | 782 |
| HinfI | GANTC | 5 cut(s) | 153, 566, 685, 925, 1466 |
| HpaI | GTTAAC | 2 cut(s) | 391, 1201 |
| HpaII | CCGG | 1 cut(s) | 635 |
| HphI | GGTGA | 2 cut(s) | 515, 720 |
| Hpy166II | GTNNAC | 7 cut(s) | 29, 41, 89, 91, 391, 1201, 1465 |
| Hpy188I | TCNGA | 5 cut(s) | 303, 322, 418, 439, 690 |
| Hpy188III | TCNNGA | 4 cut(s) | 180, 202, 581, 1043 |
| Hpy8I | GTNNAC | 7 cut(s) | 29, 41, 89, 91, 391, 1201, 1465 |
| Hpy99I | CGWCG | 3 cut(s) | 260, 374, 1049 |
| HpyAV | CCTTC | 5 cut(s) | 308, 398, 689, 1130, 1180 |
| HpyCH4III | ACNGT | 3 cut(s) | 651, 1260, 1403 |
| HpyCH4IV | ACGT | 1 cut(s) | 899 |
| HpyCH4V | TGCA | 4 cut(s) | 239, 985, 993, 1192 |
| HpyF3I | CTNAG | 7 cut(s) | 417, 451, 548, 681, 756, 884, 1387 |
| HpySE526I | ACGT | 1 cut(s) | 899 |
| Hsp92II | CATG | 6 cut(s) | 47, 357, 745, 826, 839, 1098 |
| KpnI | GGTACC | 1 cut(s) | 1245 |
| KspAI | GTTAAC | 2 cut(s) | 391, 1201 |
| Kzo9I | GATC | 8 cut(s) | 110, 204, 528, 575, 1039, 1098, 1140, 1435 |
| LguI | GCTCTTC | 1 cut(s) | 815 |
| LmnI | GCTCC | 1 cut(s) | 204 |
| Lsp1109I | GCAGC | 1 cut(s) | 1322 |
| LweI | GCATC | 1 cut(s) | 647 |
| MabI | ACCWGGT | 1 cut(s) | 293 |
| MaeI | CTAG | 3 cut(s) | 386, 581, 662 |
| MaeII | ACGT | 1 cut(s) | 899 |
| MaeIII | GTNAC | 2 cut(s) | 503, 892 |
| MalI | GATC | 8 cut(s) | 112, 206, 530, 577, 1041, 1100, 1142, 1437 |
| MboI | GATC | 8 cut(s) | 110, 204, 528, 575, 1039, 1098, 1140, 1435 |
| MboII | GAAGA | 7 cut(s) | 160, 208, 292, 717, 802, 1007, 1165 |
| MfeI | CAATTG | 1 cut(s) | 337 |
| MflI | RGATCY | 3 cut(s) | 575, 1140, 1435 |
| MlyI | GAGTC | 1 cut(s) | 1460 |
| MmeI | TCCRAC | 4 cut(s) | 325, 519, 1168, 1242 |
| MnlI | CCTC | 6 cut(s) | 266, 893, 899, 957, 1354, 1430 |
| MroXI | GAANNNNTTC | 2 cut(s) | 152, 412 |
| MspCI | CTTAAG | 2 cut(s) | 509, 1205 |
| MspI | CCGG | 1 cut(s) | 635 |
| MspR9I | CCNGG | 4 cut(s) | 58, 295, 635, 732 |
| MunI | CAATTG | 1 cut(s) | 337 |
| MvaI | CCWGG | 3 cut(s) | 58, 295, 732 |
| MvnI | CGCG | 1 cut(s) | 369 |
| NciI | CCSGG | 1 cut(s) | 635 |
| NdeII | GATC | 8 cut(s) | 110, 204, 528, 575, 1039, 1098, 1140, 1435 |
| NlaIII | CATG | 6 cut(s) | 47, 357, 745, 826, 839, 1098 |
| NlaIV | GGNNCC | 4 cut(s) | 334, 1142, 1228, 1243 |
| NmeAIII | GCCGAG | 1 cut(s) | 1401 |
| NmuCI | GTSAC | 1 cut(s) | 503 |
| NspI | RCATGY | 4 cut(s) | 47, 357, 745, 839 |
| PciI | ACATGT | 3 cut(s) | 43, 353, 835 |
| PciSI | GCTCTTC | 1 cut(s) | 815 |
| PdmI | GAANNNNTTC | 2 cut(s) | 152, 412 |
| PfeI | GAWTC | 4 cut(s) | 153, 566, 685, 925 |
| PflFI | GACNNNGTC | 2 cut(s) | 295, 368 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 400, 1355 |
| PkrI | GCNGC | 1 cut(s) | 1312 |
| PleI | GAGTC | 1 cut(s) | 1460 |
| PpsI | GAGTC | 1 cut(s) | 1460 |
| PscI | ACATGT | 3 cut(s) | 43, 353, 835 |
| PshAI | GACNNNNGTC | 1 cut(s) | 652 |
| PsiI | TTATAA | 3 cut(s) | 593, 1302, 1458 |
| Psp1406I | AACGTT | 1 cut(s) | 899 |
| Psp6I | CCWGG | 3 cut(s) | 56, 293, 730 |
| PspEI | GGTNACC | 1 cut(s) | 503 |
| PspGI | CCWGG | 3 cut(s) | 56, 293, 730 |
| PspN4I | GGNNCC | 4 cut(s) | 334, 1142, 1228, 1243 |
| PspPI | GGNCC | 4 cut(s) | 291, 482, 790, 1154 |
| PsuI | RGATCY | 3 cut(s) | 575, 1140, 1435 |
| PsyI | GACNNNGTC | 2 cut(s) | 295, 368 |
| RsaI | GTAC | 4 cut(s) | 90, 358, 840, 1243 |
| RsaNI | GTAC | 4 cut(s) | 89, 357, 839, 1242 |
| SapI | GCTCTTC | 1 cut(s) | 815 |
| SatI | GCNGC | 1 cut(s) | 1311 |
| Sau3AI | GATC | 8 cut(s) | 110, 204, 528, 575, 1039, 1098, 1140, 1435 |
| Sau96I | GGNCC | 4 cut(s) | 291, 482, 790, 1154 |
| SchI | GAGTC | 1 cut(s) | 1460 |
| ScrFI | CCNGG | 4 cut(s) | 58, 295, 635, 732 |
| SexAI | ACCWGGT | 1 cut(s) | 293 |
| SfaNI | GCATC | 1 cut(s) | 647 |
| SfcI | CTRYAG | 2 cut(s) | 570, 1249 |
| SinI | GGWCC | 3 cut(s) | 291, 482, 1154 |
| SmiI | ATTTAAAT | 1 cut(s) | 612 |
| SmlI | CTYRAG | 2 cut(s) | 509, 1205 |
| SmoI | CTYRAG | 2 cut(s) | 509, 1205 |
| SpeI | ACTAGT | 1 cut(s) | 385 |
| SsiI | CCGC | 3 cut(s) | 330, 367, 1210 |
| SspI | AATATT | 2 cut(s) | 469, 1335 |
| SspMI | CTAG | 3 cut(s) | 386, 581, 662 |
| StyD4I | CCNGG | 4 cut(s) | 56, 293, 633, 730 |
| StyI | CCWWGG | 1 cut(s) | 1230 |
| SwaI | ATTTAAAT | 1 cut(s) | 612 |
| TaaI | ACNGT | 3 cut(s) | 651, 1260, 1403 |
| TaiI | ACGT | 1 cut(s) | 902 |
| TaqI | TCGA | 5 cut(s) | 255, 672, 928, 1044, 1186 |
| TaqII | GACCGA | 1 cut(s) | 1052 |
| TatI | WGTACW | 2 cut(s) | 88, 838 |
| TfiI | GAWTC | 4 cut(s) | 153, 566, 685, 925 |
| TscAI | CASTG | 2 cut(s) | 1164, 1356 |
| TseFI | GTSAC | 1 cut(s) | 503 |
| TseI | GCWGC | 1 cut(s) | 1310 |
| Tsp45I | GTSAC | 1 cut(s) | 503 |
| TspDTI | ATGAA | 7 cut(s) | 95, 293, 300, 755, 1095, 1332, 1395 |
| TspGWI | ACGGA | 1 cut(s) | 1239 |
| TspRI | CASTG | 2 cut(s) | 1164, 1356 |
| Tth111I | GACNNNGTC | 2 cut(s) | 295, 368 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 400, 1355 |
| Vha464I | CTTAAG | 2 cut(s) | 509, 1205 |
| VpaK11BI | GGWCC | 3 cut(s) | 291, 482, 1154 |
| XapI | RAATTY | 7 cut(s) | 13, 523, 607, 617, 1001, 1021, 1076 |
| XbaI | TCTAGA | 1 cut(s) | 580 |
| XceI | RCATGY | 4 cut(s) | 47, 357, 745, 839 |
| XmiI | GTMKAC | 1 cut(s) | 40 |
| XmnI | GAANNNNTTC | 2 cut(s) | 152, 412 |
| XspI | CTAG | 3 cut(s) | 386, 581, 662 |