AT5G49750

regulation of response to stimulus

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
20210878 .. 20213734
2857 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G49750.1

Sequence Viewer

Length: 1482 bp
ATGATTTGTTCAAATTCTACTCTTTGTAAACTTTCTTGTCTACATGTTTTGAAAGCCAGGCAGTTTTCTTTTATTTATTTAACTTGTGTACACCACTTGCTTTTTCATAGATCATTTTTTGATACAATTAAAAGCAAAGGAAGTGAGAAGAGATTCTTTGTAGATTTGACGATGAGTTCAAGAATTAGAACCTGTATGCTCCTGATCTTGTTTTTCTTCCAAAAATGTTATGTTTCTGCACTCACTAATGTTTTCGACGCTTCTGCTTTAAGAGGTATGAAGAATGAATGGACCAGGTCTCCGAAAGGTTGGGAAGGCTCTGACCCTTGCGGAACCAATTGGGTTGGAATTACATGTACCAATGACCGCGTCGTGTCAATATCACTAGTTAACCACAATTTGGAAGGAACGCTTTCTGAGTATATTTTAGCCTTGTCAGAATTGGAAATCTTAGATTTATCATTCAATATTGGATTGACTGGACCACTTCCATCCAACATTGGTGACCTTAAGAAGTTAAAGAATTTGATCCTTGTGGGATGTGGTCTTAGTGGTCAAATCCCTGATTCTATAGGATCTCTAGAACAAATTATAAATCTCTCTTTGAATTTAAATAAATTTAGTGGAACAATCCCGGCATCCATTGGACGGTTGTCAAAACTAGATTGGTTCGATATAGCTGAGAATCAGATTGAAGGAGAGCTTCCAATATCTAATGGGACTTCTTCACCTGGACTTGACATGCTTACTCAAACTCAGCACTTTCATTTTGGGAAAAATAAGCTTTCGGGCCATATCCCAGAAAAGCTCTTCAACTCAAACATGAGTTTGATACATGTACTATTCAATAATAACCAATTCACAGGCAAAATCCCAGAAAGCCTCAGCCTCGTTACAACGTTGTTAGTCTTACGCCTTGACACGAATCGATTAAGTGGAGATATTCCTCCAAGTCTTAATAATCTCACAAGTCTCAACCAACTGCACTTGTGCAACAACAAATTTACAGGCAGTCTTCCAAATTTAGCCAGTTTGACCGATCTCGACGAAATAGATGTGAGCAATAACACTTTGGAATTCTCACTCGTTCCATCATGGATCGTTTCATTACGCAACCTGACATCAATAAGGATGGAAGGGATCCAACTCATAGGTCCAGTGCCGATTTCCTTCTTCAGTCTTATTCGATTGCAATCTGTTAACCTTAAGCGGAATTGGATAAACGGAACCTTGGACTTTGGTACCAACTATAGCAAACAGTTGGAGTTAGTTAGTTTAAGATACAATAACATAACTGGTTATAAACAAGCAGCTAATGAACACATCAAAGTAATATTGGCAAATAATCCAGTGTGTGGGGAGGTAGGGAACAAGCCGAGTTTCTGCTCAGCAATCAAACACAGTTCATCATTTTCTACCCTCCAAACAATCAAAGATCTATTTAAGAAGTTTATTTATAATGTGGACTCTGTGGCCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

493

Amino Acids

54.77

Weight (kDa)

8.52

Isoelectric Point (pI)

31.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 593, 1302, 1458
Acc65I GGTACC 1 cut(s) 1241
AccB1I GGYRCC 1 cut(s) 1241
AccB7I CCANNNNNTGG 2 cut(s) 400, 1355
AccI GTMKAC 1 cut(s) 40
AccII CGCG 1 cut(s) 369
AciI CCGC 3 cut(s) 330, 367, 1210
AclI AACGTT 1 cut(s) 899
AclWI GGATC 5 cut(s) 523, 583, 1106, 1135, 1148
AcoI YGGCCR 1 cut(s) 1473
AcsI RAATTY 7 cut(s) 13, 523, 607, 617, 1001, 1021, 1076
AcuI CTGAAG 1 cut(s) 1159
AfaI GTAC 4 cut(s) 90, 358, 840, 1243
AfiI CCNNNNNNNGG 3 cut(s) 400, 648, 1355
AflII CTTAAG 2 cut(s) 509, 1205
AflIII ACRYGT 3 cut(s) 43, 353, 835
AgsI TTSAA 8 cut(s) 12, 52, 180, 466, 607, 695, 814, 847
AhlI ACTAGT 1 cut(s) 385
AjnI CCWGG 3 cut(s) 56, 293, 730
AluBI AGCT 5 cut(s) 680, 703, 784, 808, 1313
AluI AGCT 5 cut(s) 680, 703, 784, 808, 1313
Alw26I GTCTC 2 cut(s) 303, 977
AlwI GGATC 5 cut(s) 523, 583, 1106, 1135, 1148
AoxI GGCC 2 cut(s) 790, 1473
ApeKI GCWGC 1 cut(s) 1310
ApoI RAATTY 7 cut(s) 13, 523, 607, 617, 1001, 1021, 1076
Asp700I GAANNNNTTC 2 cut(s) 152, 412
Asp718I GGTACC 1 cut(s) 1241
AspS9I GGNCC 4 cut(s) 291, 482, 790, 1154
AsuC2I CCSGG 1 cut(s) 635
AsuHPI GGTGA 2 cut(s) 515, 720
AvaII GGWCC 3 cut(s) 291, 482, 1154
BaeI ACNNNNGTAYC 2 cut(s) 1225, 1258
BamHI GGATCC 1 cut(s) 1140
BanI GGYRCC 1 cut(s) 1241
BbsI GAAGAC 1 cut(s) 1007
BbvCI CCTCAGC 1 cut(s) 884
BbvI GCAGC 1 cut(s) 1322
BccI CCATC 3 cut(s) 499, 1099, 1126
BceAI ACGGC 1 cut(s) 1460
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciT130I CCWGG 3 cut(s) 58, 295, 732
BcnI CCSGG 1 cut(s) 635
BcoDI GTCTC 2 cut(s) 303, 977
BcuI ACTAGT 1 cut(s) 385
BfaI CTAG 3 cut(s) 386, 581, 662
BfmI CTRYAG 2 cut(s) 570, 1249
BfrI CTTAAG 2 cut(s) 509, 1205
BglII AGATCT 1 cut(s) 1435
BisI GCNGC 1 cut(s) 1311
BlpI GCTNAGC 1 cut(s) 1387
BlsI GCNGC 1 cut(s) 1312
Bme1390I CCNGG 4 cut(s) 58, 295, 635, 732
Bme18I GGWCC 3 cut(s) 291, 482, 1154
BmgT120I GGNCC 4 cut(s) 291, 482, 790, 1154
BmiI GGNNCC 4 cut(s) 334, 1142, 1228, 1243
BmrFI CCNGG 4 cut(s) 58, 295, 635, 732
BmsI GCATC 1 cut(s) 647
BoxI GACNNNNGTC 1 cut(s) 652
BpiI GAAGAC 1 cut(s) 1007
Bpu10I CCTNAGC 1 cut(s) 884
Bpu1102I GCTNAGC 1 cut(s) 1387
BpuMI CCSGG 1 cut(s) 635
Bsa29I ATCGAT 1 cut(s) 928
BsaBI GATNNNNATC 1 cut(s) 1192
BsaI GGTCTC 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 1230
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 3 cut(s) 400, 648, 1355
Bse1I ACTGG 5 cut(s) 484, 1029, 1157, 1300, 1349
Bse8I GATNNNNATC 1 cut(s) 1192
BseBI CCWGG 3 cut(s) 58, 295, 732
BseCI ATCGAT 1 cut(s) 928
BseDI CCNNGG 1 cut(s) 1230
BseGI GGATG 4 cut(s) 491, 545, 638, 1137
BseJI GATNNNNATC 1 cut(s) 1192
BseLI CCNNNNNNNGG 3 cut(s) 400, 648, 1355
BseMII CTCAG 5 cut(s) 408, 672, 770, 898, 1401
BseNI ACTGG 5 cut(s) 484, 1029, 1157, 1300, 1349
BseXI GCAGC 1 cut(s) 1322
BsgI GTGCAG 2 cut(s) 222, 968
Bsh1236I CGCG 1 cut(s) 369
BshFI GGCC 2 cut(s) 792, 1475
BshNI GGYRCC 1 cut(s) 1241
BshVI ATCGAT 1 cut(s) 928
BsiSI CCGG 1 cut(s) 635
BslFI GGGAC 1 cut(s) 733
BslI CCNNNNNNNGG 3 cut(s) 400, 648, 1355
BsmAI GTCTC 2 cut(s) 303, 977
BsmFI GGGAC 1 cut(s) 733
BsnI GGCC 2 cut(s) 792, 1475
Bso31I GGTCTC 1 cut(s) 303
Bsp1407I TGTACA 1 cut(s) 88
Bsp143I GATC 8 cut(s) 110, 204, 528, 575, 1039, 1098, 1140, 1435
Bsp1720I GCTNAGC 1 cut(s) 1387
BspACI CCGC 3 cut(s) 330, 367, 1210
BspANI GGCC 2 cut(s) 792, 1475
BspCNI CTCAG 5 cut(s) 409, 673, 769, 897, 1400
BspDI ATCGAT 1 cut(s) 928
BspFNI CGCG 1 cut(s) 369
BspLI GGNNCC 4 cut(s) 334, 1142, 1228, 1243
BspPI GGATC 5 cut(s) 523, 583, 1106, 1135, 1148
BspQI GCTCTTC 1 cut(s) 815
BspT107I GGYRCC 1 cut(s) 1241
BspTI CTTAAG 2 cut(s) 509, 1205
BspTNI GGTCTC 1 cut(s) 303
BsrGI TGTACA 1 cut(s) 88
BsrI ACTGG 5 cut(s) 484, 1029, 1157, 1300, 1349
BssECI CCNNGG 1 cut(s) 1230
BssMI GATC 8 cut(s) 110, 204, 528, 575, 1039, 1098, 1140, 1435
BssT1I CCWWGG 1 cut(s) 1230
Bst2UI CCWGG 3 cut(s) 58, 295, 732
Bst4CI ACNGT 3 cut(s) 651, 1260, 1403
Bst6I CTCTTC 2 cut(s) 143, 815
BstAFI CTTAAG 2 cut(s) 509, 1205
BstAUI TGTACA 1 cut(s) 88
BstDEI CTNAG 7 cut(s) 417, 451, 548, 681, 756, 884, 1387
BstEII GGTNACC 1 cut(s) 503
BstF5I GGATG 4 cut(s) 491, 545, 638, 1137
BstFNI CGCG 1 cut(s) 369
BstKTI GATC 8 cut(s) 113, 207, 531, 578, 1042, 1101, 1143, 1438
BstMAI GTCTC 2 cut(s) 303, 977
BstMBI GATC 8 cut(s) 110, 204, 528, 575, 1039, 1098, 1140, 1435
BstNI CCWGG 3 cut(s) 58, 295, 732
BstNSI RCATGY 4 cut(s) 47, 357, 745, 839
BstPAI GACNNNNGTC 1 cut(s) 652
BstPI GGTNACC 1 cut(s) 503
BstSCI CCNGG 4 cut(s) 56, 293, 633, 730
BstSFI CTRYAG 2 cut(s) 570, 1249
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 1322
BstV2I GAAGAC 1 cut(s) 1007
BstX2I RGATCY 3 cut(s) 575, 1140, 1435
BstYI RGATCY 3 cut(s) 575, 1140, 1435
Bsu15I ATCGAT 1 cut(s) 928
BsuRI GGCC 2 cut(s) 792, 1475
BsuTUI ATCGAT 1 cut(s) 928
BtsCI GGATG 4 cut(s) 491, 545, 638, 1137
BtsIMutI CAGTG 2 cut(s) 1164, 1356
Cfr13I GGNCC 4 cut(s) 291, 482, 790, 1154
ClaI ATCGAT 1 cut(s) 928
CseI GACGC 2 cut(s) 266, 358
CsiI ACCWGGT 1 cut(s) 293
Csp6I GTAC 4 cut(s) 89, 357, 839, 1242
CviAII CATG 6 cut(s) 44, 354, 742, 823, 836, 1095
CviQI GTAC 4 cut(s) 89, 357, 839, 1242
DdeI CTNAG 7 cut(s) 417, 451, 548, 681, 756, 884, 1387
DpnI GATC 8 cut(s) 112, 206, 530, 577, 1041, 1100, 1142, 1437
DpnII GATC 8 cut(s) 110, 204, 528, 575, 1039, 1098, 1140, 1435
DraI TTTAAA 1 cut(s) 612
EaeI YGGCCR 1 cut(s) 1473
Eam1104I CTCTTC 2 cut(s) 143, 815
EarI CTCTTC 2 cut(s) 143, 815
Eco130I CCWWGG 1 cut(s) 1230
Eco31I GGTCTC 1 cut(s) 303
Eco47I GGWCC 3 cut(s) 291, 482, 1154
Eco57I CTGAAG 1 cut(s) 1159
Eco91I GGTNACC 1 cut(s) 503
EcoO65I GGTNACC 1 cut(s) 503
EcoRI GAATTC 1 cut(s) 1076
EcoRII CCWGG 3 cut(s) 56, 293, 730
EcoT14I CCWWGG 1 cut(s) 1230
ErhI CCWWGG 1 cut(s) 1230
FaeI CATG 6 cut(s) 47, 357, 745, 826, 839, 1098
FalI AAGNNNNNCTT 6 cut(s) 140, 172, 396, 428, 687, 719
FaqI GGGAC 1 cut(s) 733
FatI CATG 6 cut(s) 43, 353, 741, 822, 835, 1094
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 1311
FokI GGATG 4 cut(s) 478, 552, 625, 1144
Fsp4HI GCNGC 1 cut(s) 1311
FspBI CTAG 3 cut(s) 386, 581, 662
GluI GCNGC 1 cut(s) 1311
HaeIII GGCC 2 cut(s) 792, 1475
HapII CCGG 1 cut(s) 635
HgaI GACGC 2 cut(s) 266, 358
Hin1II CATG 6 cut(s) 47, 357, 745, 826, 839, 1098
HincII GTYRAC 2 cut(s) 391, 1201
HindII GTYRAC 2 cut(s) 391, 1201
HindIII AAGCTT 1 cut(s) 782
HinfI GANTC 5 cut(s) 153, 566, 685, 925, 1466
HpaI GTTAAC 2 cut(s) 391, 1201
HpaII CCGG 1 cut(s) 635
HphI GGTGA 2 cut(s) 515, 720
Hpy166II GTNNAC 7 cut(s) 29, 41, 89, 91, 391, 1201, 1465
Hpy188I TCNGA 5 cut(s) 303, 322, 418, 439, 690
Hpy188III TCNNGA 4 cut(s) 180, 202, 581, 1043
Hpy8I GTNNAC 7 cut(s) 29, 41, 89, 91, 391, 1201, 1465
Hpy99I CGWCG 3 cut(s) 260, 374, 1049
HpyAV CCTTC 5 cut(s) 308, 398, 689, 1130, 1180
HpyCH4III ACNGT 3 cut(s) 651, 1260, 1403
HpyCH4IV ACGT 1 cut(s) 899
HpyCH4V TGCA 4 cut(s) 239, 985, 993, 1192
HpyF3I CTNAG 7 cut(s) 417, 451, 548, 681, 756, 884, 1387
HpySE526I ACGT 1 cut(s) 899
Hsp92II CATG 6 cut(s) 47, 357, 745, 826, 839, 1098
KpnI GGTACC 1 cut(s) 1245
KspAI GTTAAC 2 cut(s) 391, 1201
Kzo9I GATC 8 cut(s) 110, 204, 528, 575, 1039, 1098, 1140, 1435
LguI GCTCTTC 1 cut(s) 815
LmnI GCTCC 1 cut(s) 204
Lsp1109I GCAGC 1 cut(s) 1322
LweI GCATC 1 cut(s) 647
MabI ACCWGGT 1 cut(s) 293
MaeI CTAG 3 cut(s) 386, 581, 662
MaeII ACGT 1 cut(s) 899
MaeIII GTNAC 2 cut(s) 503, 892
MalI GATC 8 cut(s) 112, 206, 530, 577, 1041, 1100, 1142, 1437
MboI GATC 8 cut(s) 110, 204, 528, 575, 1039, 1098, 1140, 1435
MboII GAAGA 7 cut(s) 160, 208, 292, 717, 802, 1007, 1165
MfeI CAATTG 1 cut(s) 337
MflI RGATCY 3 cut(s) 575, 1140, 1435
MlyI GAGTC 1 cut(s) 1460
MmeI TCCRAC 4 cut(s) 325, 519, 1168, 1242
MnlI CCTC 6 cut(s) 266, 893, 899, 957, 1354, 1430
MroXI GAANNNNTTC 2 cut(s) 152, 412
MspCI CTTAAG 2 cut(s) 509, 1205
MspI CCGG 1 cut(s) 635
MspR9I CCNGG 4 cut(s) 58, 295, 635, 732
MunI CAATTG 1 cut(s) 337
MvaI CCWGG 3 cut(s) 58, 295, 732
MvnI CGCG 1 cut(s) 369
NciI CCSGG 1 cut(s) 635
NdeII GATC 8 cut(s) 110, 204, 528, 575, 1039, 1098, 1140, 1435
NlaIII CATG 6 cut(s) 47, 357, 745, 826, 839, 1098
NlaIV GGNNCC 4 cut(s) 334, 1142, 1228, 1243
NmeAIII GCCGAG 1 cut(s) 1401
NmuCI GTSAC 1 cut(s) 503
NspI RCATGY 4 cut(s) 47, 357, 745, 839
PciI ACATGT 3 cut(s) 43, 353, 835
PciSI GCTCTTC 1 cut(s) 815
PdmI GAANNNNTTC 2 cut(s) 152, 412
PfeI GAWTC 4 cut(s) 153, 566, 685, 925
PflFI GACNNNGTC 2 cut(s) 295, 368
PflMI CCANNNNNTGG 2 cut(s) 400, 1355
PkrI GCNGC 1 cut(s) 1312
PleI GAGTC 1 cut(s) 1460
PpsI GAGTC 1 cut(s) 1460
PscI ACATGT 3 cut(s) 43, 353, 835
PshAI GACNNNNGTC 1 cut(s) 652
PsiI TTATAA 3 cut(s) 593, 1302, 1458
Psp1406I AACGTT 1 cut(s) 899
Psp6I CCWGG 3 cut(s) 56, 293, 730
PspEI GGTNACC 1 cut(s) 503
PspGI CCWGG 3 cut(s) 56, 293, 730
PspN4I GGNNCC 4 cut(s) 334, 1142, 1228, 1243
PspPI GGNCC 4 cut(s) 291, 482, 790, 1154
PsuI RGATCY 3 cut(s) 575, 1140, 1435
PsyI GACNNNGTC 2 cut(s) 295, 368
RsaI GTAC 4 cut(s) 90, 358, 840, 1243
RsaNI GTAC 4 cut(s) 89, 357, 839, 1242
SapI GCTCTTC 1 cut(s) 815
SatI GCNGC 1 cut(s) 1311
Sau3AI GATC 8 cut(s) 110, 204, 528, 575, 1039, 1098, 1140, 1435
Sau96I GGNCC 4 cut(s) 291, 482, 790, 1154
SchI GAGTC 1 cut(s) 1460
ScrFI CCNGG 4 cut(s) 58, 295, 635, 732
SexAI ACCWGGT 1 cut(s) 293
SfaNI GCATC 1 cut(s) 647
SfcI CTRYAG 2 cut(s) 570, 1249
SinI GGWCC 3 cut(s) 291, 482, 1154
SmiI ATTTAAAT 1 cut(s) 612
SmlI CTYRAG 2 cut(s) 509, 1205
SmoI CTYRAG 2 cut(s) 509, 1205
SpeI ACTAGT 1 cut(s) 385
SsiI CCGC 3 cut(s) 330, 367, 1210
SspI AATATT 2 cut(s) 469, 1335
SspMI CTAG 3 cut(s) 386, 581, 662
StyD4I CCNGG 4 cut(s) 56, 293, 633, 730
StyI CCWWGG 1 cut(s) 1230
SwaI ATTTAAAT 1 cut(s) 612
TaaI ACNGT 3 cut(s) 651, 1260, 1403
TaiI ACGT 1 cut(s) 902
TaqI TCGA 5 cut(s) 255, 672, 928, 1044, 1186
TaqII GACCGA 1 cut(s) 1052
TatI WGTACW 2 cut(s) 88, 838
TfiI GAWTC 4 cut(s) 153, 566, 685, 925
TscAI CASTG 2 cut(s) 1164, 1356
TseFI GTSAC 1 cut(s) 503
TseI GCWGC 1 cut(s) 1310
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 7 cut(s) 95, 293, 300, 755, 1095, 1332, 1395
TspGWI ACGGA 1 cut(s) 1239
TspRI CASTG 2 cut(s) 1164, 1356
Tth111I GACNNNGTC 2 cut(s) 295, 368
Van91I CCANNNNNTGG 2 cut(s) 400, 1355
Vha464I CTTAAG 2 cut(s) 509, 1205
VpaK11BI GGWCC 3 cut(s) 291, 482, 1154
XapI RAATTY 7 cut(s) 13, 523, 607, 617, 1001, 1021, 1076
XbaI TCTAGA 1 cut(s) 580
XceI RCATGY 4 cut(s) 47, 357, 745, 839
XmiI GTMKAC 1 cut(s) 40
XmnI GAANNNNTTC 2 cut(s) 152, 412
XspI CTAG 3 cut(s) 386, 581, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.