Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004586

Physical Location & Seq

Genomic Coordinates Reverse (-)

27390163 .. 27393238

Gene Structure 3076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G301700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGCAACCATGCGAATGCTTCTCTTTCTGGCTATCTTCTATTCTGCAGGGATTTGCATGATCTCCTCTGTCACAGACCCCAATGATGCTGCTGTGCTCCTATCCTTGAAGAATTCGTGGCAAAATACGCCACCCAGTTGGGACAAGTCAAATGATCCCTGTGATTCCCGGTGGGAGGGAGTCACCTGCAACAATTCAAGGGTGTCTGGACTGGGATTATCAAACATAAGCCTCAAGGGGAAACTTTATGGTGACATTGGTGGACTCATTGAATTAAAATCCTTGGACCTTTCTTTCAACCCTGGCCTCACAGGTCCTCTCTCTCCAAGATTAGGGAATCTGAAAAATTTAAGTATCCTCATCCTAGCTGGTTGCAGCTTCAATGGTGAAATTCCAGATGAATTAGGCAATCTTGCAGAGCTATCCTTCTTGGCTCTGAATTCAAATAACTTTTCGGGTGTCATACCTCCTTCTTTGGGCAAACTCTCCAAACTCTACTGGCTGGACCTGGCAGACAATCAGTTGACTGGAACAATTCCAATTTCGACCTACCATTCCCCTGGCTTAGACCTCCTGTTGAAGGCTAAACACTTCCATTTGAACAAGAACCAGCTTTCAGGTATCATACCTTCCAAACTTTTCAGCTCTAAGATGGCACTGATACACTTGTTGCTTGACGGAAATAGGTTTACTGGTACTATCCCAGTAACATTAGGACTTATTAAGACTCTTGAGGTTCTTCGGCTTGATACAAATGCTCTGGCTGGAAGTGTCCCCTCAGATCTTAACAACCTTACGAATGTCAACGAATTAAATTTGGCCCACAACTACTTGTCAGGCCCTCTACCTGACTTGAGTGGAATGAATTCCCTCAATTATGTAGACCTTAGCAACAACTCATTTGACCCATCAGAAGCTCCACTTTGGTTCTCAACCTTACCCTCACTCACCACTTTGGCCATGGAATTTGGATCACTTCAAGGGGTTGTGCCAGAGAAGCTTTTCAGCCTTCCAAATTTACAACTAGTGAAGCTCAAATACAATGCGTTTAATGATACGTTGAACATGGGCGATAGCATCAACCCACAACTGCAGCTTGTTGATCTGCAGAACAATCAGATTTCCAGAATAAGTCTGGGTTATGAATACAAAAATACATTAATACTTTTCGGGAACCCGGTTTGCAGCAGCAGTTCTGGTGCATCAAATGCTACTTTCTGTCAGCCTCCTCATCAAACTACAAAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase_Tyr

Protein Analysis

417

Amino Acids

44.97

Weight (kDa)

5.68

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49750
fragaria_vesca	FvH4_6g08970 FvH4_6g09001
prunus_persica	Prupe.6G301700_v2.0.a1
rosa_laevigata	RLG00000025099
rosa_multiflora	Rmu_co8402051.1_g000001 Rmu_sc0002435.1_g000001 Rmu_sc0010702.1_g000004 Rmu_sc0022643.1_g000002 Rmu_sc0035588.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241190 Rroxscaffold_6G00420360 Rroxscaffold_6G00420370
rosa_rugosa	Rorug03G0034500 Rorug03G0034500 Rorug03G0034600 Rorug03G0034700 Rorug03G0034800
rosa_samantha	Rh2AG320500 Rh3AG092500 Rh3AG092600 Rh3BG095700 Rh3CG096500 Rh3CG096700 Rh3DG096200 Rh3DG096300 Rh4AG031900
rosa_wichuraiana	Rw3G007950 Rw3G007960 Rw6G021920 Rw7G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	882
AclWI	GGATC	2 cut(s)	149, 979
AcoI	YGGCCR	1 cut(s)	957
AcsI	RAATTY	8 cut(s)	112, 346, 390, 439, 814, 865, 965, 1015
AfaI	GTAC	1 cut(s)	697
AfiI	CCNNNNNNNGG	4 cut(s)	175, 332, 476, 580
AhlI	ACTAGT	1 cut(s)	1024
AjnI	CCWGG	3 cut(s)	301, 507, 559
AluBI	AGCT	9 cut(s)	368, 378, 421, 613, 645, 917, 1000, 1033, 1096
AluI	AGCT	9 cut(s)	368, 378, 421, 613, 645, 917, 1000, 1033, 1096
Alw21I	GWGCWC	1 cut(s)	99
AlwI	GGATC	2 cut(s)	149, 979
AoxI	GGCC	4 cut(s)	304, 819, 838, 957
ApeKI	GCWGC	5 cut(s)	89, 375, 1093, 1185, 1188
ApoI	RAATTY	8 cut(s)	112, 346, 390, 439, 814, 865, 965, 1015
AseI	ATTAAT	1 cut(s)	1160
Asp700I	GAANNNNTTC	2 cut(s)	865, 1001
AspS9I	GGNCC	5 cut(s)	286, 314, 505, 820, 839
AsuC2I	CCSGG	2 cut(s)	169, 1178
AsuHPI	GGTGA	4 cut(s)	175, 263, 398, 940
AvaII	GGWCC	3 cut(s)	286, 314, 505
BaeI	ACNNNNGTAYC	2 cut(s)	653, 686
BalI	TGGCCA	1 cut(s)	959
BarI	GAAGNNNNNNTAC	4 cut(s)	613, 645, 1022, 1054
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	5 cut(s)	76, 387, 1105, 1197, 1200
BccI	CCATC	2 cut(s)	646, 916
BciT130I	CCWGG	3 cut(s)	303, 509, 561
BciVI	GTATCC	1 cut(s)	365
BcnI	CCSGG	2 cut(s)	169, 1178
BcuI	ACTAGT	1 cut(s)	1024
BfaI	CTAG	2 cut(s)	365, 1025
BfmI	CTRYAG	3 cut(s)	45, 1091, 1106
BfuAI	ACCTGC	1 cut(s)	194
BfuI	GTATCC	1 cut(s)	365
BglII	AGATCT	1 cut(s)	781
BisI	GCNGC	5 cut(s)	90, 376, 1094, 1186, 1189
BlsI	GCNGC	5 cut(s)	91, 377, 1095, 1187, 1190
Bme1390I	CCNGG	5 cut(s)	169, 303, 509, 561, 1178
Bme18I	GGWCC	3 cut(s)	286, 314, 505
BmgT120I	GGNCC	5 cut(s)	286, 314, 505, 820, 839
BmiI	GGNNCC	1 cut(s)	1175
BmrFI	CCNGG	5 cut(s)	169, 303, 509, 561, 1178
BmrI	ACTGGG	3 cut(s)	129, 221, 698
BmsI	GCATC	3 cut(s)	76, 1086, 1211
BmuI	ACTGGG	3 cut(s)	129, 221, 698
Bpu10I	CCTNAGC	1 cut(s)	887
BpuEI	CTTGAG	3 cut(s)	218, 752, 874
BpuMI	CCSGG	2 cut(s)	169, 1178
BsaJI	CCNNGG	4 cut(s)	282, 301, 559, 960
Bsc4I	CCNNNNNNNGG	4 cut(s)	175, 332, 476, 580
Bse1I	ACTGG	6 cut(s)	135, 216, 503, 532, 697, 704
BseBI	CCWGG	3 cut(s)	303, 509, 561
BseDI	CCNNGG	4 cut(s)	282, 301, 559, 960
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	4 cut(s)	175, 332, 476, 580
BseMII	CTCAG	1 cut(s)	792
BseNI	ACTGG	6 cut(s)	135, 216, 503, 532, 697, 704
BseRI	GAGGAG	2 cut(s)	55, 1218
BseXI	GCAGC	5 cut(s)	76, 387, 1105, 1197, 1200
BshFI	GGCC	4 cut(s)	306, 821, 840, 959
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	169, 1178
BslFI	GGGAC	2 cut(s)	155, 758
BslI	CCNNNNNNNGG	4 cut(s)	175, 332, 476, 580
BsmFI	GGGAC	2 cut(s)	155, 758
BsmI	GAATGC	1 cut(s)	21
BsnI	GGCC	4 cut(s)	306, 821, 840, 959
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	5 cut(s)	60, 154, 781, 971, 1102
Bsp19I	CCATGG	1 cut(s)	960
BspANI	GGCC	4 cut(s)	306, 821, 840, 959
BspCNI	CTCAG	1 cut(s)	791
BspLI	GGNNCC	1 cut(s)	1175
BspMAI	CTGCAG	3 cut(s)	49, 1095, 1110
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	2 cut(s)	149, 979
BsrI	ACTGG	6 cut(s)	135, 216, 503, 532, 697, 704
BssECI	CCNNGG	4 cut(s)	282, 301, 559, 960
BssMI	GATC	5 cut(s)	60, 154, 781, 971, 1102
BssT1I	CCWWGG	2 cut(s)	282, 960
Bst2UI	CCWGG	3 cut(s)	303, 509, 561
BstAPI	GCANNNNNTGC	1 cut(s)	1208
BstDEI	CTNAG	4 cut(s)	565, 648, 778, 887
BstDSI	CCRYGG	1 cut(s)	960
BstENI	CCTNNNNNAGG	1 cut(s)	578
BstF5I	GGATG	1 cut(s)	360
BstKTI	GATC	5 cut(s)	63, 157, 784, 974, 1105
BstMBI	GATC	5 cut(s)	60, 154, 781, 971, 1102
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 997, 1208
BstNI	CCWGG	3 cut(s)	303, 509, 561
BstSCI	CCNGG	5 cut(s)	167, 301, 507, 559, 1176
BstSFI	CTRYAG	3 cut(s)	45, 1091, 1106
BstV1I	GCAGC	5 cut(s)	76, 387, 1105, 1197, 1200
BstX2I	RGATCY	1 cut(s)	781
BstXI	CCANNNNNNTGG	2 cut(s)	138, 560
BstYI	RGATCY	1 cut(s)	781
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	4 cut(s)	306, 821, 840, 959
BtgI	CCRYGG	1 cut(s)	960
BtsCI	GGATG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	656
BveI	ACCTGC	1 cut(s)	194
Cfr13I	GGNCC	5 cut(s)	286, 314, 505, 820, 839
Csp6I	GTAC	1 cut(s)	696
CviAII	CATG	4 cut(s)	10, 58, 961, 1066
CviQI	GTAC	1 cut(s)	696
DdeI	CTNAG	4 cut(s)	565, 648, 778, 887
DpnI	GATC	5 cut(s)	62, 156, 783, 973, 1104
DpnII	GATC	5 cut(s)	60, 154, 781, 971, 1102
EaeI	YGGCCR	1 cut(s)	957
Eco130I	CCWWGG	2 cut(s)	282, 960
Eco47I	GGWCC	3 cut(s)	286, 314, 505
EcoNI	CCTNNNNNAGG	1 cut(s)	578
EcoO109I	RGGNCCY	2 cut(s)	314, 839
EcoRI	GAATTC	3 cut(s)	112, 439, 865
EcoRII	CCWGG	3 cut(s)	301, 507, 559
EcoT14I	CCWWGG	2 cut(s)	282, 960
ErhI	CCWWGG	2 cut(s)	282, 960
FaeI	CATG	4 cut(s)	13, 61, 964, 1069
FalI	AAGNNNNNCTT	2 cut(s)	906, 938
FaqI	GGGAC	2 cut(s)	155, 758
FatI	CATG	4 cut(s)	9, 57, 960, 1065
FblI	GTMKAC	1 cut(s)	882
Fnu4HI	GCNGC	5 cut(s)	90, 376, 1094, 1186, 1189
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	5 cut(s)	90, 376, 1094, 1186, 1189
FspBI	CTAG	2 cut(s)	365, 1025
GluI	GCNGC	5 cut(s)	90, 376, 1094, 1186, 1189
HaeIII	GGCC	4 cut(s)	306, 821, 840, 959
HapII	CCGG	2 cut(s)	169, 1178
Hin1II	CATG	4 cut(s)	13, 61, 964, 1069
HincII	GTYRAC	2 cut(s)	525, 805
HindII	GTYRAC	2 cut(s)	525, 805
HindIII	AAGCTT	1 cut(s)	998
HinfI	GANTC	5 cut(s)	164, 180, 264, 337, 727
HpaII	CCGG	2 cut(s)	169, 1178
HphI	GGTGA	4 cut(s)	175, 263, 398, 940
Hpy166II	GTNNAC	5 cut(s)	263, 525, 690, 805, 883
Hpy188I	TCNGA	5 cut(s)	342, 438, 781, 913, 1119
Hpy188III	TCNNGA	5 cut(s)	207, 395, 731, 1125, 1171
Hpy8I	GTNNAC	5 cut(s)	263, 525, 690, 805, 883
HpyAV	CCTTC	5 cut(s)	436, 480, 574, 639, 1019
HpyCH4IV	ACGT	1 cut(s)	1058
HpyCH4V	TGCA	9 cut(s)	47, 57, 189, 375, 416, 1093, 1108, 1185, 1202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 997, 1208
HpyF3I	CTNAG	4 cut(s)	565, 648, 778, 887
HpySE526I	ACGT	1 cut(s)	1058
Hsp92II	CATG	4 cut(s)	13, 61, 964, 1069
Kzo9I	GATC	5 cut(s)	60, 154, 781, 971, 1102
LmnI	GCTCC	2 cut(s)	102, 922
Lsp1109I	GCAGC	5 cut(s)	76, 387, 1105, 1197, 1200
LweI	GCATC	3 cut(s)	76, 1086, 1211
MaeI	CTAG	2 cut(s)	365, 1025
MaeII	ACGT	1 cut(s)	1058
MaeIII	GTNAC	4 cut(s)	70, 181, 251, 706
MalI	GATC	5 cut(s)	62, 156, 783, 973, 1104
MboI	GATC	5 cut(s)	60, 154, 781, 971, 1102
MboII	GAAGA	3 cut(s)	28, 121, 731
MflI	RGATCY	1 cut(s)	781
MhlI	GDGCHC	1 cut(s)	99
MlsI	TGGCCA	1 cut(s)	959
MluNI	TGGCCA	1 cut(s)	959
MlyI	GAGTC	3 cut(s)	189, 258, 721
Mox20I	TGGCCA	1 cut(s)	959
MroXI	GAANNNNTTC	2 cut(s)	865, 1001
MscI	TGGCCA	1 cut(s)	959
MseI	TTAA	8 cut(s)	275, 350, 723, 786, 812, 1050, 1160, 1249
MslI	CAYNNNNRTG	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	959
MspI	CCGG	2 cut(s)	169, 1178
MspR9I	CCNGG	5 cut(s)	169, 303, 509, 561, 1178
Mva1269I	GAATGC	1 cut(s)	21
MvaI	CCWGG	3 cut(s)	303, 509, 561
MwoI	GCNNNNNNNGC	3 cut(s)	127, 997, 1208
NciI	CCSGG	2 cut(s)	169, 1178
NcoI	CCATGG	1 cut(s)	960
NdeII	GATC	5 cut(s)	60, 154, 781, 971, 1102
NlaIII	CATG	4 cut(s)	13, 61, 964, 1069
NlaIV	GGNNCC	1 cut(s)	1175
NmuCI	GTSAC	3 cut(s)	70, 181, 251
PaqCI	CACCTGC	1 cut(s)	194
PctI	GAATGC	1 cut(s)	21
PdmI	GAANNNNTTC	2 cut(s)	865, 1001
PfeI	GAWTC	2 cut(s)	164, 337
PkrI	GCNGC	5 cut(s)	91, 377, 1095, 1187, 1190
PleI	GAGTC	3 cut(s)	188, 258, 721
PpsI	GAGTC	3 cut(s)	188, 258, 721
PpuMI	RGGWCCY	1 cut(s)	314
PshBI	ATTAAT	1 cut(s)	1160
Psp5II	RGGWCCY	1 cut(s)	314
Psp6I	CCWGG	3 cut(s)	301, 507, 559
PspGI	CCWGG	3 cut(s)	301, 507, 559
PspN4I	GGNNCC	1 cut(s)	1175
PspPI	GGNCC	5 cut(s)	286, 314, 505, 820, 839
PspPPI	RGGWCCY	1 cut(s)	314
PstI	CTGCAG	3 cut(s)	49, 1095, 1110
PsuI	RGATCY	1 cut(s)	781
RsaI	GTAC	1 cut(s)	697
RsaNI	GTAC	1 cut(s)	696
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	8 cut(s)	275, 350, 723, 786, 812, 1050, 1160, 1249
SatI	GCNGC	5 cut(s)	90, 376, 1094, 1186, 1189
Sau3AI	GATC	5 cut(s)	60, 154, 781, 971, 1102
Sau96I	GGNCC	5 cut(s)	286, 314, 505, 820, 839
SchI	GAGTC	3 cut(s)	189, 258, 721
ScrFI	CCNGG	5 cut(s)	169, 303, 509, 561, 1178
SduI	GDGCHC	1 cut(s)	99
SfaNI	GCATC	3 cut(s)	76, 1086, 1211
SfcI	CTRYAG	3 cut(s)	45, 1091, 1106
SinI	GGWCC	3 cut(s)	286, 314, 505
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	3 cut(s)	233, 731, 853
SmoI	CTYRAG	3 cut(s)	233, 731, 853
SpeI	ACTAGT	1 cut(s)	1024
SspMI	CTAG	2 cut(s)	365, 1025
StyD4I	CCNGG	5 cut(s)	167, 301, 507, 559, 1176
StyI	CCWWGG	2 cut(s)	282, 960
TaiI	ACGT	1 cut(s)	1061
TaqI	TCGA	1 cut(s)	545
TfiI	GAWTC	2 cut(s)	164, 337
Tru1I	TTAA	8 cut(s)	275, 350, 723, 786, 812, 1050, 1160, 1249
Tru9I	TTAA	8 cut(s)	275, 350, 723, 786, 812, 1050, 1160, 1249
TscAI	CASTG	1 cut(s)	663
TseFI	GTSAC	3 cut(s)	70, 181, 251
TseI	GCWGC	5 cut(s)	89, 375, 1093, 1185, 1188
Tsp45I	GTSAC	3 cut(s)	70, 181, 251
TspDTI	ATGAA	3 cut(s)	414, 878, 1158
TspGWI	ACGGA	1 cut(s)	693
TspRI	CASTG	1 cut(s)	663
VpaK11BI	GGWCC	3 cut(s)	286, 314, 505
VspI	ATTAAT	1 cut(s)	1160
XagI	CCTNNNNNAGG	1 cut(s)	578
XapI	RAATTY	8 cut(s)	112, 346, 390, 439, 814, 865, 965, 1015
XcmI	CCANNNNNNNNNTGG	2 cut(s)	958, 1132
XmiI	GTMKAC	1 cut(s)	882
XmnI	GAANNNNTTC	2 cut(s)	865, 1001
XspI	CTAG	2 cut(s)	365, 1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.