Rh3CG096700
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0004586
Physical Location & Seq
Forward (+)
7584035 .. 7586642
2608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG096700.1

Sequence Viewer

Length: 996 bp
ATGGGCCTCATAGGGGAACTCAGTAGCTACATTGAGGGACTCACTGAACTAAACTCCTTGGACCTGTCATTCAACCCTGGACTCCAAGGTCCTCTTCCTCCACAGTTAGGGGATCTCCCAAAGTTAAATATCCTGATACTAGCTGGCTGCAGCTTCAGTGGCAACATTCCAGATGAGTTGGGAAATCTTGAACAGCTAGCGTTCTTGGCTCTGAATACAAATTACTTCACTGGTAGCATACCTCCTTCTTTAGGTAAGCTCTCCAAACTCTACTGGCTTGATGTGGCAGACAATCAATTGAGCGGACCTCTACCAATTTCGACATCCACTTCTCCAGGCTTAGACCTCTTGTTAAACGCTAAACATTTCCATTTGAACAAGAACCAGCTTTCAGGTTCTATTCCACTCGAGCTTTTCAGCTCCGAGATGATATTGATACATGCGTTACTTGACGAAAACAATTTTACTGGGAGTATTCCAATGACATTAGGACTTGTTAAAACTCTTGAGATGGTTCGGCTTAATAGAAATGCTCTGACCGGAAGTGTCCCCTCAAACCTTAACAACCTTACAAATGTCAATGAACTAAATTTGGCCAACAACAAATTGGCAGGCCCCTTGCCTGACTTAACTGGAATGAATTCTCTCAATTATGTAGACCTTAGTAACAACTCATTTGACCCATCTGAAGCTCCACTTTGGTTCTCAACCTTACCCACACTCACCACTCTGGTTATGGAATTTGGATCACTTCAAGGGCCTGTGCCAGAGAAGCTTTTCAGCCTTCCAGAATTACAGCAAGTGAGACTGAAATACAATAAGTTTAATGGTGCATTAAACATGGGCGATAGCATTAGTCTACAACTGGAGCTTGTGGATCTCCAGAACAATCAGATTTCCCAGCTCACTATAGAAGAAGAATACAAAGATGCATTGATACTTAAAGGGAACCCGATATGCGCCGGTAGTCTATCAAACACTACTTGGTGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 Pkinase_Tyr

Protein Analysis

331

Amino Acids

35.91

Weight (kDa)

4.43

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 35 - 283 3e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 87
AccBSI CCGCTC 1 cut(s) 303
AccI GTMKAC 2 cut(s) 657, 859
AciI CCGC 1 cut(s) 303
AclWI GGATC 3 cut(s) 120, 754, 885
AcoI YGGCCR 1 cut(s) 594
AcsI RAATTY 3 cut(s) 589, 640, 740
AcuI CTGAAG 2 cut(s) 139, 708
AfiI CCNNNNNNNGG 3 cut(s) 13, 107, 251
AgsI TTSAA 4 cut(s) 73, 191, 376, 755
AjnI CCWGG 2 cut(s) 76, 334
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
Alw26I GTCTC 1 cut(s) 799
AlwI GGATC 3 cut(s) 120, 754, 885
Ama87I CYCGRG 1 cut(s) 407
AoxI GGCC 4 cut(s) 4, 594, 613, 758
ApeKI GCWGC 2 cut(s) 147, 150
ApoI RAATTY 3 cut(s) 589, 640, 740
Asp700I GAANNNNTTC 2 cut(s) 640, 776
AspLEI GCGC 1 cut(s) 962
AspS9I GGNCC 6 cut(s) 4, 61, 89, 305, 614, 758
AsuHPI GGTGA 1 cut(s) 715
AsuNHI GCTAGC 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 407
AvaII GGWCC 3 cut(s) 61, 89, 305
BaeI ACNNNNGTAYC 2 cut(s) 428, 461
BalI TGGCCA 1 cut(s) 596
BbvI GCAGC 2 cut(s) 134, 162
BccI CCATC 2 cut(s) 505, 691
BciT130I CCWGG 2 cut(s) 78, 336
BcoDI GTCTC 1 cut(s) 799
BfaI CTAG 2 cut(s) 140, 197
BfmI CTRYAG 2 cut(s) 148, 909
BisI GCNGC 2 cut(s) 148, 151
BlsI GCNGC 2 cut(s) 149, 152
Bme1390I CCNGG 2 cut(s) 78, 336
Bme18I GGWCC 3 cut(s) 61, 89, 305
BmeT110I CYCGRG 1 cut(s) 407
BmgT120I GGNCC 6 cut(s) 4, 61, 89, 305, 614, 758
BmiI GGNNCC 2 cut(s) 616, 950
BmrFI CCNGG 2 cut(s) 78, 336
BmrI ACTGGG 1 cut(s) 477
BmsI GCATC 1 cut(s) 919
BmtI GCTAGC 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 477
BplI GAGNNNNNCTC 2 cut(s) 292, 324
BpmI CTGGAG 3 cut(s) 318, 866, 887
BpuEI CTTGAG 1 cut(s) 527
BsaJI CCNNGG 3 cut(s) 57, 76, 85
BsaWI WCCGGW 1 cut(s) 539
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 107, 251
Bse118I RCCGGY 1 cut(s) 962
Bse1I ACTGG 5 cut(s) 235, 278, 472, 637, 870
BseBI CCWGG 2 cut(s) 78, 336
BseDI CCNNGG 3 cut(s) 57, 76, 85
BseGI GGATG 1 cut(s) 323
BseLI CCNNNNNNNGG 3 cut(s) 13, 107, 251
BseMII CTCAG 1 cut(s) 34
BseNI ACTGG 5 cut(s) 235, 278, 472, 637, 870
BseXI GCAGC 2 cut(s) 134, 162
BseYI CCCAGC 1 cut(s) 900
BshFI GGCC 4 cut(s) 6, 596, 615, 760
BsiHKCI CYCGRG 1 cut(s) 407
BsiSI CCGG 2 cut(s) 540, 963
BslFI GGGAC 2 cut(s) 51, 533
BslI CCNNNNNNNGG 3 cut(s) 13, 107, 251
BsmAI GTCTC 1 cut(s) 799
BsmFI GGGAC 2 cut(s) 51, 533
BsnI GGCC 4 cut(s) 6, 596, 615, 760
BsoBI CYCGRG 1 cut(s) 407
Bsp143I GATC 3 cut(s) 112, 746, 877
BspACI CCGC 1 cut(s) 303
BspANI GGCC 4 cut(s) 6, 596, 615, 760
BspCNI CTCAG 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 616, 950
BspMAI CTGCAG 1 cut(s) 152
BspOI GCTAGC 1 cut(s) 200
BspPI GGATC 3 cut(s) 120, 754, 885
BsrBI CCGCTC 1 cut(s) 303
BsrFI RCCGGY 1 cut(s) 962
BsrI ACTGG 5 cut(s) 235, 278, 472, 637, 870
BssAI RCCGGY 1 cut(s) 962
BssECI CCNNGG 3 cut(s) 57, 76, 85
BssMI GATC 3 cut(s) 112, 746, 877
BssT1I CCWWGG 2 cut(s) 57, 85
Bst2UI CCWGG 2 cut(s) 78, 336
Bst4CI ACNGT 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 99
BstC8I GCNNGC 3 cut(s) 145, 198, 613
BstDEI CTNAG 3 cut(s) 20, 340, 662
BstENI CCTNNNNNAGG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 323
BstHHI GCGC 1 cut(s) 962
BstKTI GATC 3 cut(s) 115, 749, 880
BstMAI GTCTC 1 cut(s) 799
BstMBI GATC 3 cut(s) 112, 746, 877
BstMWI GCNNNNNNNGC 3 cut(s) 159, 206, 772
BstNI CCWGG 2 cut(s) 78, 336
BstNSI RCATGY 1 cut(s) 443
BstSCI CCNGG 2 cut(s) 76, 334
BstSFI CTRYAG 2 cut(s) 148, 909
BstV1I GCAGC 2 cut(s) 134, 162
BstX2I RGATCY 2 cut(s) 112, 877
BstYI RGATCY 2 cut(s) 112, 877
BsuRI GGCC 4 cut(s) 6, 596, 615, 760
BtsCI GGATG 1 cut(s) 323
BtsIMutI CAGTG 3 cut(s) 42, 163, 228
Cac8I GCNNGC 3 cut(s) 145, 198, 613
CfoI GCGC 1 cut(s) 962
Cfr10I RCCGGY 1 cut(s) 962
Cfr13I GGNCC 6 cut(s) 4, 61, 89, 305, 614, 758
CviAII CATG 2 cut(s) 440, 841
DdeI CTNAG 3 cut(s) 20, 340, 662
DpnI GATC 3 cut(s) 114, 748, 879
DpnII GATC 3 cut(s) 112, 746, 877
DrdI GACNNNNNNGTC 1 cut(s) 87
DseDI GACNNNNNNGTC 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 594
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco130I CCWWGG 2 cut(s) 57, 85
Eco47I GGWCC 3 cut(s) 61, 89, 305
Eco57I CTGAAG 2 cut(s) 139, 708
Eco88I CYCGRG 1 cut(s) 407
EcoNI CCTNNNNNAGG 1 cut(s) 249
EcoO109I RGGNCCY 3 cut(s) 89, 614, 758
EcoRI GAATTC 1 cut(s) 640
EcoRII CCWGG 2 cut(s) 76, 334
EcoT14I CCWWGG 2 cut(s) 57, 85
EcoT22I ATGCAT 1 cut(s) 934
ErhI CCWWGG 2 cut(s) 57, 85
FaeI CATG 2 cut(s) 443, 844
FaiI YATR 8 cut(s) 11, 239, 441, 654, 737, 842, 911, 958
FalI AAGNNNNNCTT 4 cut(s) 78, 110, 681, 713
FaqI GGGAC 2 cut(s) 51, 533
FatI CATG 2 cut(s) 439, 840
FblI GTMKAC 2 cut(s) 657, 859
Fnu4HI GCNGC 2 cut(s) 148, 151
FokI GGATG 1 cut(s) 310
Fsp4HI GCNGC 2 cut(s) 148, 151
FspBI CTAG 2 cut(s) 140, 197
GlaI GCGC 1 cut(s) 961
GluI GCNGC 2 cut(s) 148, 151
GsaI CCCAGC 1 cut(s) 904
GsuI CTGGAG 3 cut(s) 318, 866, 887
HaeIII GGCC 4 cut(s) 6, 596, 615, 760
HapII CCGG 2 cut(s) 540, 963
HhaI GCGC 1 cut(s) 962
Hin1II CATG 2 cut(s) 443, 844
Hin6I GCGC 1 cut(s) 960
HinP1I GCGC 1 cut(s) 960
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 2 cut(s) 39, 81
HpaII CCGG 2 cut(s) 540, 963
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 2 cut(s) 658, 860
Hpy188I TCNGA 5 cut(s) 213, 424, 537, 688, 894
Hpy188III TCNNGA 6 cut(s) 133, 170, 188, 506, 788, 883
Hpy8I GTNNAC 2 cut(s) 658, 860
HpyAV CCTTC 2 cut(s) 255, 794
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4V TGCA 3 cut(s) 150, 833, 932
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 206, 772
HpyF3I CTNAG 3 cut(s) 20, 340, 662
Hsp92II CATG 2 cut(s) 443, 844
HspAI GCGC 1 cut(s) 960
Kzo9I GATC 3 cut(s) 112, 746, 877
LmnI GCTCC 3 cut(s) 425, 697, 868
Lsp1109I GCAGC 2 cut(s) 134, 162
LweI GCATC 1 cut(s) 919
MaeI CTAG 2 cut(s) 140, 197
MaeIII GTNAC 2 cut(s) 444, 665
MalI GATC 3 cut(s) 114, 748, 879
MbiI CCGCTC 1 cut(s) 303
MboI GATC 3 cut(s) 112, 746, 877
MboII GAAGA 3 cut(s) 86, 926, 929
MfeI CAATTG 1 cut(s) 296
MflI RGATCY 2 cut(s) 112, 877
MlsI TGGCCA 1 cut(s) 596
MluNI TGGCCA 1 cut(s) 596
MlyI GAGTC 2 cut(s) 33, 75
MnlI CCTC 8 cut(s) 17, 28, 102, 108, 252, 318, 356, 562
Mox20I TGGCCA 1 cut(s) 596
Mph1103I ATGCAT 1 cut(s) 934
MroXI GAANNNNTTC 2 cut(s) 640, 776
MscI TGGCCA 1 cut(s) 596
MseI TTAA 9 cut(s) 125, 353, 498, 522, 561, 629, 825, 836, 942
Msp20I TGGCCA 1 cut(s) 596
MspI CCGG 2 cut(s) 540, 963
MspR9I CCNGG 2 cut(s) 78, 336
MunI CAATTG 1 cut(s) 296
MvaI CCWGG 2 cut(s) 78, 336
MwoI GCNNNNNNNGC 3 cut(s) 159, 206, 772
NdeII GATC 3 cut(s) 112, 746, 877
NheI GCTAGC 1 cut(s) 196
NlaIII CATG 2 cut(s) 443, 844
NlaIV GGNNCC 2 cut(s) 616, 950
NsiI ATGCAT 1 cut(s) 934
NspI RCATGY 1 cut(s) 443
PaeR7I CTCGAG 1 cut(s) 407
PdmI GAANNNNTTC 2 cut(s) 640, 776
PkrI GCNGC 2 cut(s) 149, 152
PleI GAGTC 2 cut(s) 33, 75
PpsI GAGTC 2 cut(s) 33, 75
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 2 cut(s) 76, 334
PspFI CCCAGC 1 cut(s) 900
PspGI CCWGG 2 cut(s) 76, 334
PspN4I GGNNCC 2 cut(s) 616, 950
PspPI GGNCC 6 cut(s) 4, 61, 89, 305, 614, 758
PspPPI RGGWCCY 1 cut(s) 89
PspXI VCTCGAGB 1 cut(s) 407
PstI CTGCAG 1 cut(s) 152
PsuI RGATCY 2 cut(s) 112, 877
SaqAI TTAA 9 cut(s) 125, 353, 498, 522, 561, 629, 825, 836, 942
SatI GCNGC 2 cut(s) 148, 151
Sau3AI GATC 3 cut(s) 112, 746, 877
Sau96I GGNCC 6 cut(s) 4, 61, 89, 305, 614, 758
SchI GAGTC 2 cut(s) 33, 75
ScrFI CCNGG 2 cut(s) 78, 336
SfaNI GCATC 1 cut(s) 919
SfcI CTRYAG 2 cut(s) 148, 909
Sfr274I CTCGAG 1 cut(s) 407
SinI GGWCC 3 cut(s) 61, 89, 305
SlaI CTCGAG 1 cut(s) 407
SmlI CTYRAG 2 cut(s) 407, 506
SmoI CTYRAG 2 cut(s) 407, 506
SsiI CCGC 1 cut(s) 303
SspMI CTAG 2 cut(s) 140, 197
StyD4I CCNGG 2 cut(s) 76, 334
StyI CCWWGG 2 cut(s) 57, 85
TaaI ACNGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 320, 408
Tru1I TTAA 9 cut(s) 125, 353, 498, 522, 561, 629, 825, 836, 942
Tru9I TTAA 9 cut(s) 125, 353, 498, 522, 561, 629, 825, 836, 942
TscAI CASTG 3 cut(s) 49, 163, 235
TseI GCWGC 2 cut(s) 147, 150
TspDTI ATGAA 2 cut(s) 597, 653
TspRI CASTG 3 cut(s) 49, 163, 235
VpaK11BI GGWCC 3 cut(s) 61, 89, 305
XagI CCTNNNNNAGG 1 cut(s) 249
XapI RAATTY 3 cut(s) 589, 640, 740
XceI RCATGY 1 cut(s) 443
XcmI CCANNNNNNNNNTGG 2 cut(s) 604, 733
XhoI CTCGAG 1 cut(s) 407
XmiI GTMKAC 2 cut(s) 657, 859
XmnI GAANNNNTTC 2 cut(s) 640, 776
XspI CTAG 2 cut(s) 140, 197
Zsp2I ATGCAT 1 cut(s) 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.