Rorug03G0034800
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004586
Physical Location & Seq
Forward (+)
2782805 .. 2784684
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0034800.1

Sequence Viewer

Length: 777 bp
ATGGCCGTCGGCAAGAACAAGCGCATTTCGAAGGGGAAGAAGACTGGGAAGAAGAAGGCAGCTGACCCTTTTGCGAAGAAGGATTGGTATGATATCAAGGCACCTAATCTCTTCCATGTGAGGCAGGTCGGCAAAACCCTCGTCACCAGAACTCAGGGTACTAAGATTGCTTCTGAAGGACTCAAACATCGGGTGTTCGAGGTTTCTCTGGCTGATCTCCAGAAGGATGAGGATGCTTACAGAAAGATCCGTCTAAGAGCAGAGGATGTGCAAGGGAAGGATGTACTCACAAACTTCTGGGGGATAGATTTCACCACTGACAAGCTGAGGTCATTGGTCCGAAAGTGGCAGACACTGATTGAGGCTCATGTGGATGTAAAGACTACCGATAACTATACCCTTAGGATGTTCTGTATTGCGTTTACCAAGAGACGCGCAAATCAGGTCAAGCGTACCTGCTATGCTCAATCCAGTCAAATTCGTCAGATTCGCCGCAAGATGAGAGAAATTATGGTAAACCAGGCTTCAGCCTGTGATCTGAAGGAGTTGGTGCAAAAATTCATTCCTGAGATGATTGGCAGAGAGATTGAAAAGGCTACGTCCAGCATCTACCCACTGCAGAATGTTTTCATTCGAAAAGTCAAGATCTTGAAAGCTCCCAAATTTGATCTTGGCAAGTTGATGGAGGTTCATGAGAAAAAAGAGGATGTTGGTGTGAAAATTGAGAGACCAGCTGAAGAAATTGTGCCCGAGGAGACCACCATTGTTGGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 Pkinase_Tyr

Protein Analysis

258

Amino Acids

29.75

Weight (kDa)

9.9

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S3Ae PF01015 16 - 220 3.3e-80 Ribosomal S3Ae family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 115, 464
AccB1I GGYRCC 1 cut(s) 100
AccII CGCG 1 cut(s) 435
AciI CCGC 1 cut(s) 493
AclWI GGATC 1 cut(s) 241
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 477, 557, 662
AcuI CTGAAG 4 cut(s) 195, 510, 560, 756
AfaI GTAC 3 cut(s) 160, 285, 454
AgsI TTSAA 2 cut(s) 590, 652
AjnI CCWGG 1 cut(s) 519
AluBI AGCT 4 cut(s) 62, 325, 656, 734
AluI AGCT 4 cut(s) 62, 325, 656, 734
Alw26I GTCTC 3 cut(s) 424, 721, 749
AlwI GGATC 1 cut(s) 241
AlwNI CAGNNNCTG 1 cut(s) 355
Ama87I CYCGRG 1 cut(s) 749
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 3 cut(s) 477, 557, 662
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
Asp700I GAANNNNTTC 1 cut(s) 626
AspLEI GCGC 2 cut(s) 24, 437
AspS9I GGNCC 1 cut(s) 337
AsuHPI GGTGA 2 cut(s) 136, 304
AsuII TTCGAA 2 cut(s) 29, 634
AvaI CYCGRG 1 cut(s) 749
AvaII GGWCC 1 cut(s) 337
AxyI CCTNAGG 1 cut(s) 401
BaeGI GKGCMC 1 cut(s) 750
BanI GGYRCC 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 47
BbvCI CCTCAGC 1 cut(s) 326
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 676
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BciT130I CCWGG 1 cut(s) 521
BcoDI GTCTC 3 cut(s) 424, 721, 749
BfmI CTRYAG 1 cut(s) 617
BfuAI ACCTGC 2 cut(s) 115, 464
BglII AGATCT 1 cut(s) 645
BisI GCNGC 2 cut(s) 60, 493
BlsI GCNGC 2 cut(s) 61, 494
Bme1390I CCNGG 1 cut(s) 521
Bme18I GGWCC 1 cut(s) 337
BmeT110I CYCGRG 1 cut(s) 749
BmgT120I GGNCC 1 cut(s) 337
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 521
BmrI ACTGGG 1 cut(s) 54
BmsI GCATC 2 cut(s) 223, 615
BmuI ACTGGG 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 47
BpmI CTGGAG 1 cut(s) 203
Bpu10I CCTNAGC 1 cut(s) 326
Bpu14I TTCGAA 2 cut(s) 29, 634
BsaI GGTCTC 2 cut(s) 721, 749
BsaJI CCNNGG 1 cut(s) 750
Bse1I ACTGG 2 cut(s) 49, 471
Bse21I CCTNAGG 1 cut(s) 401
BseBI CCWGG 1 cut(s) 521
BseDI CCNNGG 1 cut(s) 750
BseGI GGATG 7 cut(s) 232, 238, 271, 286, 379, 411, 712
BseMII CTCAG 3 cut(s) 167, 317, 558
BseNI ACTGG 2 cut(s) 49, 471
BseRI GAGGAG 1 cut(s) 767
BseSI GKGCMC 1 cut(s) 750
BseXI GCAGC 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 435
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 749
BsmAI GTCTC 3 cut(s) 424, 721, 749
BsmBI CGTCTC 1 cut(s) 424
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 721, 749
BsoBI CYCGRG 1 cut(s) 749
Bsp119I TTCGAA 2 cut(s) 29, 634
Bsp1286I GDGCHC 1 cut(s) 750
Bsp143I GATC 5 cut(s) 214, 246, 535, 645, 667
BspACI CCGC 1 cut(s) 493
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 166, 318, 559
BspFNI CGCG 1 cut(s) 435
BspHI TCATGA 1 cut(s) 691
BspLI GGNNCC 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 621
BspMI ACCTGC 2 cut(s) 115, 464
BspPI GGATC 1 cut(s) 241
BspT104I TTCGAA 2 cut(s) 29, 634
BspT107I GGYRCC 1 cut(s) 100
BspTNI GGTCTC 2 cut(s) 721, 749
BsrI ACTGG 2 cut(s) 49, 471
BssECI CCNNGG 1 cut(s) 750
BssMI GATC 5 cut(s) 214, 246, 535, 645, 667
Bst2UI CCWGG 1 cut(s) 521
Bst6I CTCTTC 1 cut(s) 116
BstBI TTCGAA 2 cut(s) 29, 634
BstDEI CTNAG 6 cut(s) 153, 162, 254, 326, 401, 567
BstF5I GGATG 7 cut(s) 232, 238, 271, 286, 379, 411, 712
BstFNI CGCG 1 cut(s) 435
BstHHI GCGC 2 cut(s) 24, 437
BstKTI GATC 5 cut(s) 217, 249, 538, 648, 670
BstMAI GTCTC 3 cut(s) 424, 721, 749
BstMBI GATC 5 cut(s) 214, 246, 535, 645, 667
BstNI CCWGG 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 519
BstSFI CTRYAG 1 cut(s) 617
BstSLI GKGCMC 1 cut(s) 750
BstUI CGCG 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 47
BstX2I RGATCY 2 cut(s) 246, 645
BstYI RGATCY 2 cut(s) 246, 645
Bsu36I CCTNAGG 1 cut(s) 401
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 7 cut(s) 232, 238, 271, 286, 379, 411, 712
BtsI GCAGTG 1 cut(s) 614
BtsIMutI CAGTG 3 cut(s) 315, 353, 614
BveI ACCTGC 2 cut(s) 115, 464
CaiI CAGNNNCTG 1 cut(s) 355
CciI TCATGA 1 cut(s) 691
CfoI GCGC 2 cut(s) 24, 437
Cfr13I GGNCC 1 cut(s) 337
CseI GACGC 1 cut(s) 441
Csp6I GTAC 3 cut(s) 159, 284, 453
CspCI CAANNNNNGTGG 1 cut(s) 748
CviAII CATG 4 cut(s) 116, 368, 692, 774
CviQI GTAC 3 cut(s) 159, 284, 453
DdeI CTNAG 6 cut(s) 153, 162, 254, 326, 401, 567
DpnI GATC 5 cut(s) 216, 248, 537, 647, 669
DpnII GATC 5 cut(s) 214, 246, 535, 645, 667
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco31I GGTCTC 2 cut(s) 721, 749
Eco32I GATATC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 337
Eco57I CTGAAG 4 cut(s) 195, 510, 560, 756
Eco81I CCTNAGG 1 cut(s) 401
Eco88I CYCGRG 1 cut(s) 749
EcoRII CCWGG 1 cut(s) 519
EcoRV GATATC 1 cut(s) 94
Esp3I CGTCTC 1 cut(s) 424
FaeI CATG 4 cut(s) 119, 371, 695, 777
FaiI YATR 8 cut(s) 90, 117, 369, 396, 462, 512, 693, 775
FatI CATG 4 cut(s) 115, 367, 691, 773
Fnu4HI GCNGC 2 cut(s) 60, 493
FokI GGATG 7 cut(s) 239, 245, 278, 293, 386, 418, 719
Fsp4HI GCNGC 2 cut(s) 60, 493
GlaI GCGC 2 cut(s) 23, 436
GluI GCNGC 2 cut(s) 60, 493
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 441
HhaI GCGC 2 cut(s) 24, 437
Hin1II CATG 4 cut(s) 119, 371, 695, 777
Hin6I GCGC 2 cut(s) 22, 435
HinP1I GCGC 2 cut(s) 22, 435
HinfI GANTC 2 cut(s) 180, 487
HphI GGTGA 2 cut(s) 136, 304
Hpy166II GTNNAC 2 cut(s) 423, 517
Hpy188I TCNGA 4 cut(s) 175, 341, 486, 540
Hpy188III TCNNGA 5 cut(s) 220, 566, 643, 649, 692
Hpy8I GTNNAC 2 cut(s) 423, 517
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 7 cut(s) 25, 49, 73, 170, 217, 271, 535
HpyCH4IV ACGT 1 cut(s) 599
HpyCH4V TGCA 3 cut(s) 271, 553, 619
HpyF3I CTNAG 6 cut(s) 153, 162, 254, 326, 401, 567
HpySE526I ACGT 1 cut(s) 599
Hsp92II CATG 4 cut(s) 119, 371, 695, 777
HspAI GCGC 2 cut(s) 22, 435
Kzo9I GATC 5 cut(s) 214, 246, 535, 645, 667
LmnI GCTCC 2 cut(s) 661, 770
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 2 cut(s) 223, 615
MaeII ACGT 1 cut(s) 599
MaeIII GTNAC 1 cut(s) 142
MalI GATC 5 cut(s) 216, 248, 537, 647, 669
MboI GATC 5 cut(s) 214, 246, 535, 645, 667
MboII GAAGA 7 cut(s) 49, 52, 61, 64, 88, 103, 749
MflI RGATCY 2 cut(s) 246, 645
MhlI GDGCHC 1 cut(s) 750
MluCI AATT 6 cut(s) 477, 507, 557, 662, 720, 741
MlyI GAGTC 1 cut(s) 174
MmeI TCCRAC 1 cut(s) 748
MroXI GAANNNNTTC 1 cut(s) 626
MslI CAYNNNNRTG 1 cut(s) 372
MspA1I CMGCKG 2 cut(s) 62, 734
MspR9I CCNGG 1 cut(s) 521
MvaI CCWGG 1 cut(s) 521
MvnI CGCG 1 cut(s) 435
NdeII GATC 5 cut(s) 214, 246, 535, 645, 667
NlaIII CATG 4 cut(s) 119, 371, 695, 777
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 142
NspV TTCGAA 2 cut(s) 29, 634
PagI TCATGA 1 cut(s) 691
PdmI GAANNNNTTC 1 cut(s) 626
PfeI GAWTC 1 cut(s) 487
PkrI GCNGC 2 cut(s) 61, 494
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 519
PspGI CCWGG 1 cut(s) 519
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 337
PsrI GAACNNNNNNTAC 2 cut(s) 142, 174
PstI CTGCAG 1 cut(s) 621
PstNI CAGNNNCTG 1 cut(s) 355
PsuI RGATCY 2 cut(s) 246, 645
PvuII CAGCTG 2 cut(s) 62, 734
RsaI GTAC 3 cut(s) 160, 285, 454
RsaNI GTAC 3 cut(s) 159, 284, 453
RseI CAYNNNNRTG 1 cut(s) 372
SatI GCNGC 2 cut(s) 60, 493
Sau3AI GATC 5 cut(s) 214, 246, 535, 645, 667
Sau96I GGNCC 1 cut(s) 337
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 521
SduI GDGCHC 1 cut(s) 750
SfaNI GCATC 2 cut(s) 223, 615
SfcI CTRYAG 1 cut(s) 617
SfuI TTCGAA 2 cut(s) 29, 634
SinI GGWCC 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 372
Sse9I AATT 6 cut(s) 477, 507, 557, 662, 720, 741
SsiI CCGC 1 cut(s) 493
StyD4I CCNGG 1 cut(s) 519
TaiI ACGT 1 cut(s) 602
TaqI TCGA 3 cut(s) 29, 198, 634
TasI AATT 6 cut(s) 477, 507, 557, 662, 720, 741
TatI WGTACW 1 cut(s) 283
TauI GCSGC 1 cut(s) 495
TfiI GAWTC 1 cut(s) 487
TscAI CASTG 3 cut(s) 322, 360, 621
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 3 cut(s) 550, 619, 680
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 3 cut(s) 322, 360, 621
VpaK11BI GGWCC 1 cut(s) 337
XapI RAATTY 3 cut(s) 477, 557, 662
XmnI GAANNNNTTC 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.