Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010702.1

Orthogroup ID

OG0004586

Physical Location & Seq

Genomic Coordinates Reverse (-)

20690 .. 22932

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010702.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atgatccctgtggagtgccatgggaaggagtcaactgtactggtgcaagggaggttatcagccatggggctcataggggaactttccaccggctacattgggcaactcgatgaactaacgtctttggatgtgtcattcaatcctggcatcacaggtcgtatttctccacaaatatcatttctcctgaagttaaataccctcttcagtggtactattccagatccgttgggagatattgaacagctaaccttcttggctctaaattcaaataacttatctggaacaataccttctgctttgggtcaactctccaacctctacttgcttgatctatcagacaatcagctgactggacctctcccaatctcaacctctacttctccaggaggattagacctcttgttaaaggctgaacacttccatttgagcaacaaccagctttcaggttccattccacccgagcttttcagttctgaaatgagactgattcatctgttccttgatggaaataaacttaccggggttattccaatgactttaggacttgttcagacttttgagatggttcggcttaatagaaatactctgaccggaagtgtcccctcaaacctaaacaaccttacaaatgtcaatgaactgaatttggccaacaacaacttgacaggccttttgccagacttgactggaatgaattccctcaattatgtagaccttagtaacaactcatttgacccatcagtagctccactttggttctcaaccttacccacacttactactctggttatggaattcggatcacttcaagggcctgtgccagagaatcttttcagccttccagaattacaggaagtgaaactgaaatacaatacatttaacggtacactgaacatgggtgataacatcagtctacaactggagcttgtggatctccagaacaatcagatttcccatctcactatagaagaagaatacaaggatgcattaatacttaaagggaacccgatatgttccggtagtctatcaaacactacttggtgtcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase_Tyr

Protein Analysis

348

Amino Acids

37.7

Weight (kDa)

4.39

Isoelectric Point (pI)

28.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49750
fragaria_vesca	FvH4_6g08970 FvH4_6g09001
prunus_persica	Prupe.6G301700_v2.0.a1
rosa_laevigata	RLG00000025099
rosa_multiflora	Rmu_co8402051.1_g000001 Rmu_sc0002435.1_g000001 Rmu_sc0010702.1_g000004 Rmu_sc0022643.1_g000002 Rmu_sc0035588.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241190 Rroxscaffold_6G00420360 Rroxscaffold_6G00420370
rosa_rugosa	Rorug03G0034500 Rorug03G0034500 Rorug03G0034600 Rorug03G0034700 Rorug03G0034800
rosa_samantha	Rh2AG320500 Rh3AG092500 Rh3AG092600 Rh3BG095700 Rh3CG096500 Rh3CG096700 Rh3DG096200 Rh3DG096300 Rh4AG031900
rosa_wichuraiana	Rw3G007950 Rw3G007960 Rw6G021920 Rw7G026850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	708, 910
AclWI	GGATC	3 cut(s)	215, 805, 936
AcoI	YGGCCR	1 cut(s)	645
AcsI	RAATTY	4 cut(s)	262, 640, 691, 791
AcuI	CTGAAG	2 cut(s)	187, 206
AfaI	GTAC	3 cut(s)	39, 211, 883
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	4 cut(s)	139, 239, 267, 806
AjnI	CCWGG	2 cut(s)	142, 382
AluBI	AGCT	6 cut(s)	244, 346, 439, 463, 743, 922
AluI	AGCT	6 cut(s)	244, 346, 439, 463, 743, 922
Alw26I	GTCTC	1 cut(s)	475
AlwI	GGATC	3 cut(s)	215, 805, 936
Ama87I	CYCGRG	1 cut(s)	458
AoxI	GGCC	3 cut(s)	645, 664, 809
ApoI	RAATTY	4 cut(s)	262, 640, 691, 791
ArsI	GACNNNNNNTTYG	2 cut(s)	652, 684
AseI	ATTAAT	1 cut(s)	986
Asp700I	GAANNNNTTC	2 cut(s)	691, 827
AspS9I	GGNCC	2 cut(s)	353, 809
AsuC2I	CCSGG	1 cut(s)	520
AsuHPI	GGTGA	1 cut(s)	908
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	353
BalI	TGGCCA	1 cut(s)	647
BanII	GRGCYC	1 cut(s)	72
BccI	CCATC	4 cut(s)	497, 556, 742, 960
BciT130I	CCWGG	2 cut(s)	144, 384
BcnI	CCSGG	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	475
BfmI	CTRYAG	1 cut(s)	960
Bme1390I	CCNGG	3 cut(s)	144, 384, 520
Bme18I	GGWCC	1 cut(s)	353
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	353, 809
BmiI	GGNNCC	2 cut(s)	448, 1001
BmrFI	CCNGG	3 cut(s)	144, 384, 520
BmsI	GCATC	2 cut(s)	156, 970
BpmI	CTGGAG	3 cut(s)	366, 917, 938
BpuMI	CCSGG	1 cut(s)	520
BsaJI	CCNNGG	3 cut(s)	19, 63, 519
BsaWI	WCCGGW	2 cut(s)	590, 1013
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	4 cut(s)	45, 355, 688, 921
BseBI	CCWGG	2 cut(s)	144, 384
BseDI	CCNNGG	3 cut(s)	19, 63, 519
BseGI	GGATG	2 cut(s)	133, 985
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseNI	ACTGG	4 cut(s)	45, 355, 688, 921
BshFI	GGCC	3 cut(s)	647, 666, 811
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	4 cut(s)	90, 519, 591, 1014
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	475
BsmFI	GGGAC	1 cut(s)	584
BsnI	GGCC	3 cut(s)	647, 666, 811
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	5 cut(s)	3, 220, 328, 797, 928
Bsp19I	CCATGG	2 cut(s)	19, 63
BspANI	GGCC	3 cut(s)	647, 666, 811
BspLI	GGNNCC	2 cut(s)	448, 1001
BspPI	GGATC	3 cut(s)	215, 805, 936
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	4 cut(s)	45, 355, 688, 921
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	19, 63, 519
BssMI	GATC	5 cut(s)	3, 220, 328, 797, 928
BssT1I	CCWWGG	2 cut(s)	19, 63
Bst2UI	CCWGG	2 cut(s)	144, 384
Bst4CI	ACNGT	2 cut(s)	37, 881
Bst6I	CTCTTC	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	713
BstDSI	CCRYGG	2 cut(s)	19, 63
BstF5I	GGATG	2 cut(s)	133, 985
BstKTI	GATC	5 cut(s)	6, 223, 331, 800, 931
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	5 cut(s)	3, 220, 328, 797, 928
BstNI	CCWGG	2 cut(s)	144, 384
BstSCI	CCNGG	3 cut(s)	142, 382, 518
BstSFI	CTRYAG	1 cut(s)	960
BstX2I	RGATCY	2 cut(s)	220, 928
BstYI	RGATCY	2 cut(s)	220, 928
BsuRI	GGCC	3 cut(s)	647, 666, 811
BtgI	CCRYGG	2 cut(s)	19, 63
BtsCI	GGATG	2 cut(s)	133, 985
BtsIMutI	CAGTG	2 cut(s)	211, 884
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	353, 809
Csp6I	GTAC	3 cut(s)	38, 210, 882
CviAII	CATG	3 cut(s)	20, 64, 892
CviQI	GTAC	3 cut(s)	38, 210, 882
DdeI	CTNAG	1 cut(s)	713
DpnI	GATC	5 cut(s)	5, 222, 330, 799, 930
DpnII	GATC	5 cut(s)	3, 220, 328, 797, 928
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	2 cut(s)	19, 63
Eco147I	AGGCCT	1 cut(s)	666
Eco24I	GRGCYC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	353
Eco57I	CTGAAG	2 cut(s)	187, 206
Eco88I	CYCGRG	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	809
EcoRI	GAATTC	2 cut(s)	691, 791
EcoRII	CCWGG	2 cut(s)	142, 382
EcoT14I	CCWWGG	2 cut(s)	19, 63
EcoT22I	ATGCAT	1 cut(s)	985
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	2 cut(s)	19, 63
FaeI	CATG	3 cut(s)	23, 67, 895
FaiI	YATR	8 cut(s)	21, 65, 74, 705, 788, 893, 962, 1009
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	3 cut(s)	19, 63, 891
FblI	GTMKAC	2 cut(s)	708, 910
FokI	GGATG	2 cut(s)	140, 992
FriOI	GRGCYC	1 cut(s)	72
GsuI	CTGGAG	3 cut(s)	366, 917, 938
HaeIII	GGCC	3 cut(s)	647, 666, 811
HapII	CCGG	4 cut(s)	90, 519, 591, 1014
Hin1II	CATG	3 cut(s)	23, 67, 895
HincII	GTYRAC	2 cut(s)	33, 305
HindII	GTYRAC	2 cut(s)	33, 305
HinfI	GANTC	3 cut(s)	29, 487, 823
HpaII	CCGG	4 cut(s)	90, 519, 591, 1014
HphI	GGTGA	1 cut(s)	908
Hpy166II	GTNNAC	5 cut(s)	33, 305, 709, 884, 911
Hpy188I	TCNGA	6 cut(s)	337, 475, 552, 588, 797, 945
Hpy188III	TCNNGA	5 cut(s)	184, 218, 279, 839, 934
Hpy8I	GTNNAC	5 cut(s)	33, 305, 709, 884, 911
HpyAV	CCTTC	4 cut(s)	19, 259, 300, 845
HpyCH4III	ACNGT	2 cut(s)	37, 881
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	2 cut(s)	46, 983
HpyF3I	CTNAG	1 cut(s)	713
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	3 cut(s)	23, 67, 895
Kzo9I	GATC	5 cut(s)	3, 220, 328, 797, 928
LmnI	GCTCC	2 cut(s)	748, 919
LweI	GCATC	2 cut(s)	156, 970
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	716
MalI	GATC	5 cut(s)	5, 222, 330, 799, 930
MboI	GATC	5 cut(s)	3, 220, 328, 797, 928
MboII	GAAGA	3 cut(s)	193, 977, 980
MflI	RGATCY	2 cut(s)	220, 928
MhlI	GDGCHC	1 cut(s)	72
MlsI	TGGCCA	1 cut(s)	647
MluCI	AATT	6 cut(s)	262, 640, 691, 700, 791, 842
MluNI	TGGCCA	1 cut(s)	647
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	9 cut(s)	45, 209, 326, 366, 380, 382, 407, 613, 707
Mox20I	TGGCCA	1 cut(s)	647
Mph1103I	ATGCAT	1 cut(s)	985
MroXI	GAANNNNTTC	2 cut(s)	691, 827
MscI	TGGCCA	1 cut(s)	647
MseI	TTAA	6 cut(s)	191, 404, 573, 876, 986, 993
Msp20I	TGGCCA	1 cut(s)	647
MspA1I	CMGCKG	1 cut(s)	346
MspI	CCGG	4 cut(s)	90, 519, 591, 1014
MspR9I	CCNGG	3 cut(s)	144, 384, 520
MvaI	CCWGG	2 cut(s)	144, 384
NciI	CCSGG	1 cut(s)	520
NcoI	CCATGG	2 cut(s)	19, 63
NdeII	GATC	5 cut(s)	3, 220, 328, 797, 928
NlaIII	CATG	3 cut(s)	23, 67, 895
NlaIV	GGNNCC	2 cut(s)	448, 1001
NsiI	ATGCAT	1 cut(s)	985
PceI	AGGCCT	1 cut(s)	666
PdmI	GAANNNNTTC	2 cut(s)	691, 827
PfeI	GAWTC	2 cut(s)	487, 823
PfoI	TCCNGGA	1 cut(s)	382
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PshBI	ATTAAT	1 cut(s)	986
Psp6I	CCWGG	2 cut(s)	142, 382
PspGI	CCWGG	2 cut(s)	142, 382
PspN4I	GGNNCC	2 cut(s)	448, 1001
PspPI	GGNCC	2 cut(s)	353, 809
PsuI	RGATCY	2 cut(s)	220, 928
PvuII	CAGCTG	1 cut(s)	346
RsaI	GTAC	3 cut(s)	39, 211, 883
RsaNI	GTAC	3 cut(s)	38, 210, 882
SaqAI	TTAA	6 cut(s)	191, 404, 573, 876, 986, 993
Sau3AI	GATC	5 cut(s)	3, 220, 328, 797, 928
Sau96I	GGNCC	2 cut(s)	353, 809
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	3 cut(s)	144, 384, 520
SduI	GDGCHC	1 cut(s)	72
SfaNI	GCATC	2 cut(s)	156, 970
SfcI	CTRYAG	1 cut(s)	960
SinI	GGWCC	1 cut(s)	353
Sse9I	AATT	6 cut(s)	262, 640, 691, 700, 791, 842
SseBI	AGGCCT	1 cut(s)	666
StuI	AGGCCT	1 cut(s)	666
StyD4I	CCNGG	3 cut(s)	142, 382, 518
StyI	CCWWGG	2 cut(s)	19, 63
TaaI	ACNGT	2 cut(s)	37, 881
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	1 cut(s)	108
TasI	AATT	6 cut(s)	262, 640, 691, 700, 791, 842
TatI	WGTACW	1 cut(s)	37
TfiI	GAWTC	2 cut(s)	487, 823
Tru1I	TTAA	6 cut(s)	191, 404, 573, 876, 986, 993
Tru9I	TTAA	6 cut(s)	191, 404, 573, 876, 986, 993
TscAI	CASTG	2 cut(s)	211, 891
TspDTI	ATGAA	4 cut(s)	126, 479, 648, 704
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	2 cut(s)	211, 891
VpaK11BI	GGWCC	1 cut(s)	353
VspI	ATTAAT	1 cut(s)	986
XapI	RAATTY	4 cut(s)	262, 640, 691, 791
XmiI	GTMKAC	2 cut(s)	708, 910
XmnI	GAANNNNTTC	2 cut(s)	691, 827
Zsp2I	ATGCAT	1 cut(s)	985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.